RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780135|ref|YP_003064548.1| hypothetical protein
CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62]
         (408 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 71/150 (47%)

Query: 5   KNF--------LLGV---LRLKKCTRGV-----------------FLVITAILLSSFVAI 36
           KN         L G+   LR  K   G+                 FL + +   S  +  
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP 434

Query: 37  VDVVVDQVTVMQKTALLQEVL--DHVIYRTSPKNL----YDLREAGRDNFIRHQIEKALN 90
                        + L+ + L  ++V +  + K++    YD                   
Sbjct: 435 A------------SDLINKDLVKNNVSF--NAKDIQIPVYD------------------- 461

Query: 91  TYNSRDLSNIGSIESIVKDAV--ILTKNVN 118
           T++  DL  +    SI +  V  I+   V 
Sbjct: 462 TFDGSDLRVLS--GSISERIVDCIIRLPVK 489



 Score = 39.9 bits (93), Expect = 0.001
 Identities = 75/435 (17%), Positives = 121/435 (27%), Gaps = 212/435 (48%)

Query: 8   LLGVLRL-------K--KCTRGVFL------------VITAILLS------SFVAIVDVV 40
           L+GV++L       K    T G               ++TA+ ++      SF   V   
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV--- 296

Query: 41  VDQVTVMQKTALLQEVL------DHVIY-RTS--PKNLYDLREAG----------RDNFI 81
                   + A+   VL       +  Y  TS  P  L D  E             +   
Sbjct: 297 --------RKAI--TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN-LT 345

Query: 82  RHQIEKALNTYNSRDL---SNIGSIESIVKDAVILTKNVNSLPLQFTVD-IALSTTVQLR 137
           + Q++  +N  NS  L     +          + L   VN       V     S    L 
Sbjct: 346 QEQVQDYVNKTNSH-LPAGKQV---------EISL---VNG-AKNLVVSGPPQS----LY 387

Query: 138 G--SLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLASRGKVADSQVHRPKY 195
           G    L+      G +D SR              +PF               S+  R   
Sbjct: 388 GLNLTLRKAKAPSG-LDQSR--------------IPF---------------SE--RK-- 413

Query: 196 LEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFENFQYHQDNNMLIFYS 255
           L++S+              FL  +       +P+H  S               + LI   
Sbjct: 414 LKFSN-------------RFLP-V------ASPFH--S---------HLLVPASDLI--- 439

Query: 256 HRDFYR--ITWD----HFPYSFIKNVFDMTSNQFGDGQVLTN--------------TNHC 295
           ++D  +  ++++      P      V+D T     DG  L                    
Sbjct: 440 NKDLVKNNVSFNAKDIQIP------VYD-TF----DGSDLRVLSGSISERIVDCIIRLPV 488

Query: 296 -------FPHGASHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITI 348
                  F   A+H   +L F  G     S +G  T              ++ G G   I
Sbjct: 489 KWETTTQFK--ATH---ILDFGPG---GASGLGVLT------------HRNKDGTGVRVI 528

Query: 349 F--SVGFSPDQDTRY 361
              ++  +PD D  +
Sbjct: 529 VAGTLDINPDDDYGF 543



 Score = 30.3 bits (68), Expect = 0.75
 Identities = 67/460 (14%), Positives = 134/460 (29%), Gaps = 159/460 (34%)

Query: 7   FLLGVL-RLKKCTRGVFLVITAILL----SSFVAIVDV--VVDQVTVMQKTALLQEVLDH 59
           FL  V   ++    G F  +  + L    + ++   D+  +  ++     T L++     
Sbjct: 64  FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT--KE 121

Query: 60  VIYRTSPKNLYDLREAGRDNFIRHQIEKAL----NTYNSRDLSNI----GSIESIVKDAV 111
           +I     KN    R   +      +   AL       N++ L  I    G+ +   ++  
Sbjct: 122 LI-----KNYITARIMAKRP-FDKKSNSALFRAVGEGNAQ-LVAIFGGQGNTDDYFEELR 174

Query: 112 ILTKNVNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMP 171
            L +  + L         +   ++     L    +          +K ++ Q  GL I+ 
Sbjct: 175 DLYQTYHVL---------VGDLIKFSAETLSELIR-----TTLDAEK-VFTQ--GLNILE 217

Query: 172 FAWDGYWLASRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIP----------- 220
                 WL +      +    P         + YL         LS IP           
Sbjct: 218 ------WLENP----SN---TPD--------KDYL---------LS-IPISCPLIGVIQL 246

Query: 221 --YKNFC----MAPYHYKSIFYWAFENFQYH-QDNNMLI---FYSHRDFYRITWDHFPYS 270
             Y          P   +S    A      H Q    L+     +  D    +W+ F  S
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGA----TGHSQG---LVTAVAIAETD----SWESFFVS 295

Query: 271 FIKNVFDMTSNQFGDGQVL----TNTNHCFPHGASHSKYMLMFAIGNQ-------LSRSS 319
             K +            VL          +P+ +     +L  ++ N        LS S+
Sbjct: 296 VRKAI-----------TVLFFIGVRCYEAYPNTSLPPS-ILEDSLENNEGVPSPMLSISN 343

Query: 320 VGKETIDRILQDCYYMHKH-HRTGRGAITIFSVGFSPDQDTRYTLRQCASDPSKYYEINS 378
           + +E +   +      + H     +  I++ +                +  P   Y +N 
Sbjct: 344 LTQEQVQDYVNKT---NSHLPAGKQVEISLVN---GAKNLV------VSGPPQSLYGLNL 391

Query: 379 -----------DENVMPIAKSLARN-VITNWFSQF-TITV 405
                      D++ +P ++   R    +N   +F  +  
Sbjct: 392 TLRKAKAPSGLDQSRIPFSE---RKLKFSN---RFLPVAS 425


>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding,
           structural genomics, protein structure initiative, PSI;
           1.75A {Escherichia coli O157}
          Length = 376

 Score = 33.9 bits (76), Expect = 0.060
 Identities = 22/211 (10%), Positives = 44/211 (20%), Gaps = 3/211 (1%)

Query: 160 MYKQNIGLMIMPFAWDGYWLASRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQI 219
              +N+  ++          A      D  +  P  ++ S Y    +            +
Sbjct: 115 FLAENVPGIMQEKYSGIRNKAFNLVSGDYDILDPIKVKASDYGAPTIRTRYFFIGVKKSL 174

Query: 220 PYKNFCMAPYHYKSIFYWAFENFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMT 279
                               +      D     + S  + +R         F + ++   
Sbjct: 175 KLDISDEVFMPKMIDPVTVKDALYGLPDIIDANWQSDSESWRTIKKDRKGGFYEKLWGQI 234

Query: 280 SNQFGDGQ---VLTNTNHCFPHGASHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMH 336
               GD +    L N       G  HSK +           +     +            
Sbjct: 235 PRNVGDTESIAKLKNNIISGCTGTLHSKIVQERYASLSFGETDKISRSTRLDPNGFCPTL 294

Query: 337 KHHRTGRGAITIFSVGFSPDQDTRYTLRQCA 367
           +                 P      T R+ A
Sbjct: 295 RAGTARDKGSFQAVRPIHPYHPRVITPREAA 325


>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
           {Homo sapiens} SCOP: c.62.1.1
          Length = 198

 Score = 30.2 bits (67), Expect = 0.99
 Identities = 20/166 (12%), Positives = 45/166 (27%), Gaps = 19/166 (11%)

Query: 240 ENFQYHQDNNMLIFYSHRDFYRITWDHFPYSF-----IKNVFDMTSNQFGDGQVLTNTNH 294
             FQ       L+ +S++     T++ F  S      + +V  +    +    +    + 
Sbjct: 39  SQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHR 98

Query: 295 CFPHGASHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFS 354
            F       +      I     +          ++                I  +++G  
Sbjct: 99  LFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAG---------IIRYAIGVG 149

Query: 355 PDQDTRY---TLRQCASDPS--KYYEINSDENVMPIAKSLARNVIT 395
                R     L   AS PS    +++   + +  I   L   +  
Sbjct: 150 LAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA 195


>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
           1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
           1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
           1u0o_C
          Length = 202

 Score = 29.1 bits (64), Expect = 1.8
 Identities = 14/187 (7%), Positives = 43/187 (22%), Gaps = 32/187 (17%)

Query: 209 NTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFENFQYHQDNNMLIFYSHRDFYRITWDHFP 268
             +++       +    +  YH  S  Y   ++ +   +   +         ++      
Sbjct: 39  VDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEV 98

Query: 269 YSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGASHSKYMLMFAIGNQLSRSSVGKETIDRI 328
             +                             +    +L+ A                R 
Sbjct: 99  LKYTLFQI----------------FSKIDRPEASRIALLLMASQ----EPQRMSRNFVRY 138

Query: 329 LQDCYYMHKHHRTGRGAITIFSVGFSPDQDTRYTLRQCASDPS--KYYEINSDENVMPIA 386
           +Q               + +  VG  P  + +  +R         K + ++S + +    
Sbjct: 139 VQGLKKKK---------VIVIPVGIGPHANLK-QIRLIEKQAPENKAFVLSSVDELEQQR 188

Query: 387 KSLARNV 393
             +   +
Sbjct: 189 DEIVSYL 195


>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
           protein, structural protein; 2.70A {Staphylococcus
           epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
          Length = 729

 Score = 28.9 bits (64), Expect = 2.4
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 191 HRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFENFQYHQD--- 247
            RP++++      +Y N    + +FL +    N        ++      EN   + D   
Sbjct: 124 QRPQFVDLDRVRVEYFNAKENINSFLRKQSACNIIFRTAIVRAHHIRFNENLNTYVDWSF 183

Query: 248 NNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQ 282
               + Y ++ F RI   +FP+ F   V+D     
Sbjct: 184 VLEYMKYVNK-FVRI--FNFPFYFRGEVYDPFETL 215


>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
           adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
           musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
          Length = 880

 Score = 27.8 bits (61), Expect = 4.3
 Identities = 17/164 (10%), Positives = 47/164 (28%), Gaps = 7/164 (4%)

Query: 247 DNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGASHSKYM 306
                            + +       N   +T+ +  D ++            +    +
Sbjct: 406 GTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSV 465

Query: 307 LMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDT----RYT 362
            +      ++ +          +     +       RG   I  V   PD+       Y 
Sbjct: 466 PLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYF 525

Query: 363 LRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVV 406
           +    +DP+++  +N D  ++    +L R       + +T+ ++
Sbjct: 526 I---GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIML 566


>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix,
           homodimer, transcription regulator; 3.60A {Pseudomonas
           aeruginosa}
          Length = 227

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 17/181 (9%), Positives = 40/181 (22%), Gaps = 11/181 (6%)

Query: 176 GYWLASRGKVADS--QVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKS 233
           G ++  +G+ A +   +       Y    +       +     +      F   P +  +
Sbjct: 40  GAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVAT 99

Query: 234 IFYWAFENFQYHQDNNMLIFYSHRDFYRITWDHFPY----SFIKNVFDMTSNQFGDGQVL 289
                        +   L          +             I  +  ++        V 
Sbjct: 100 AQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATHRVVR 159

Query: 290 TNTNHCFPHGASHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHH--RTGRGAIT 347
                       + +  +  A        S+  ET  RI+     +            I+
Sbjct: 160 YLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHR---LGDEGIIHLDGREIS 216

Query: 348 I 348
           I
Sbjct: 217 I 217


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.324    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,491,328
Number of extensions: 159318
Number of successful extensions: 536
Number of sequences better than 10.0: 1
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 25
Length of query: 408
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 313
Effective length of database: 3,390,050
Effective search space: 1061085650
Effective search space used: 1061085650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.5 bits)