Query gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Match_columns 125 No_of_seqs 106 out of 1338 Neff 7.1 Searched_HMMs 33803 Date Sun May 22 09:04:39 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780136.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2rcc_A Ribonucleoside-diphosp 100.0 2.7E-35 7.9E-40 235.0 11.0 125 1-125 68-195 (197) 2 >1syy_A Ribonucleoside-diphosp 100.0 1.9E-33 5.6E-38 223.8 11.0 123 1-124 224-346 (346) 3 >1r2f_A Protein (ribonucleotid 100.0 1.2E-31 3.7E-36 212.7 11.0 122 1-125 61-186 (191) 4 >3dhz_A Ribonucleotide reducta 100.0 1E-31 3E-36 213.3 10.4 122 1-125 61-186 (191) 5 >1jk0_A RNR Y2, ribonucleoside 100.0 2.1E-31 6.2E-36 211.3 7.1 114 1-123 166-279 (295) 6 >2p1i_A Ribonucleotide reducta 100.0 1.9E-31 5.7E-36 211.6 6.8 114 1-123 62-175 (188) 7 >1h0o_A Ribonucleoside-diphosp 100.0 3.9E-31 1.2E-35 209.7 7.5 114 1-123 46-159 (172) 8 >1jk0_B RNR Y4, ribonucleoside 100.0 1.4E-31 4.2E-36 212.4 5.2 114 1-123 71-184 (199) 9 >1mxr_A Ribonucleotide reducta 100.0 1.6E-30 4.8E-35 206.0 9.9 125 1-125 235-366 (375) 10 >3ee4_A Probable ribonucleosid 99.9 2.1E-25 6.3E-30 174.9 9.1 116 1-121 208-323 (323) 11 >2o1z_A Ribonucleotide reducta 99.9 3E-24 8.8E-29 167.9 5.6 89 1-97 62-150 (151) 12 >3chh_A P-aminobenzoate N-oxyg 98.8 2.6E-09 7.7E-14 77.0 2.3 102 1-111 224-327 (336) 13 >2oc5_A Hypothetical protein; 93.0 0.71 2.1E-05 25.8 7.9 75 1-83 155-230 (244) 14 >1za0_A Possible acyl-[acyl-ca 58.3 14 0.00042 17.9 4.6 78 2-86 187-267 (275) 15 >2uw1_A Desaturase, plastid de 50.8 19 0.00055 17.1 4.4 23 2-24 47-69 (166) 16 >3ge3_A Toluene-4-monooxygenas 38.5 29 0.00086 16.0 7.0 81 2-85 229-314 (374) 17 >1otk_A Protein PAAC, phenylac 28.5 43 0.0013 15.0 6.4 76 1-85 47-131 (138) 18 >3b81_A Transcriptional regula 25.7 48 0.0014 14.7 5.1 47 39-85 71-117 (123) 19 >1b0n_B Protein (SINI protein) 24.5 17 0.00051 17.4 -0.1 29 43-71 10-38 (57) No 1 >>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} (A:150-346) Probab=100.00 E-value=2.7e-35 Score=235.04 Aligned_cols=125 Identities=29% Similarity=0.491 Sum_probs=117.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) .|||++|+.+++.+|+++++|+|+.++++++++|++|+++||++|++|++++++.+++|++++.+++||+|+||+||++| T Consensus 68 ~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~eave~E~~~~~~~~~~~~~g~~~~~~~~yiky~an~~L~~l 147 (197) T 2rcc_A 68 NRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLXKAADLEKDWFRYIIGDKIPGINPEDXETYISFIANKRAVQL 147 (197) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSTTCCHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 74488999889999998754066321001489999999999999999999970676579889999999999999999977 Q ss_pred CCCCCCCC-CCCCHHHHHHHHCCC-CCCCCCCCCHHHHHHHCCC-CCC Q ss_conf 97878898-788868999983466-5732131003333430657-789 Q gi|254780136|r 81 GLEPLFKY-TENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAEL-KWD 125 (125) Q Consensus 81 Gl~~~f~~-~~nPl~W~~~~~~~~-~~~nFFE~r~t~Y~k~~~~-~~D 125 (125) |++|+|++ .+||+|||..+++.. +++||||+|+|+|++|+.. +|| T Consensus 148 G~~~~f~~~~~np~~w~~~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~d 195 (197) T 2rcc_A 148 GXEKPYPEIKHNPXKWIRAYEDVNSGKSDFFEQKSRQYAKVSADNGFD 195 (197) T ss_dssp TCCCSCTTCCSCSCTTC------------------------------- T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCC T ss_conf 999899987799588999865347653588888768751066778866 No 2 >>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} (A:) Probab=100.00 E-value=1.9e-33 Score=223.79 Aligned_cols=123 Identities=57% Similarity=1.023 Sum_probs=120.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) +|||++|+.||+.+++.++.|.|+.+++++++.+++++.+||++|.+|++++++.+++|++++.+++|++|+||+||.+| T Consensus 224 ~RDE~~H~~f~~~l~~~~~~e~~~~~~~~~~~~v~~l~~eav~~E~~~~~~~~~~~~~g~~~~~~~~yv~~~an~~L~~l 303 (346) T 1syy_A 224 LRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERI 303 (346) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 52156788899999999865009875213899999999999999999999966788789899999999999999999977 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC Q ss_conf 97878898788868999983466573213100333343065778 Q gi|254780136|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 124 (125) Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~~ 124 (125) |++|+|++ +||+||+...+++.+++||||+|+|+|+||++++| T Consensus 304 G~~~~~~~-~np~~w~~~~~~~~~~~nfFe~~~~~Y~~~~~~~w 346 (346) T 1syy_A 304 GLKPIYHT-KNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346 (346) T ss_dssp TCCCSSCC-CCSCTTC---------------------------- T ss_pred CCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCC T ss_conf 99998999-99647799873867775778897331365576889 No 3 >>1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism, oxidoreductase; 2.10A {Salmonella typhimurium} (A:129-319) Probab=99.97 E-value=1.2e-31 Score=212.74 Aligned_cols=122 Identities=18% Similarity=0.191 Sum_probs=110.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) +|||++|+.+++.++++++.|+|+++++++.++|++|+++||++|.+|++++++ .|++++++++||+|+||+||.+| T Consensus 61 ~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~---~g~~~e~~~~yi~y~an~rl~~l 137 (191) T 1r2f_A 61 IRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALYA---ETGWVNDVKAFLCYNANKALMNL 137 (191) T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TTSCHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHC T ss_conf 988989999999999999985448888789999999999999999999998743---35769999999999999999977 Q ss_pred CCCCCCCCC-CC--CHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC-CCC Q ss_conf 978788987-88--8689999834665732131003333430657-789 Q gi|254780136|r 81 GLEPLFKYT-EN--PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 125 (125) Q Consensus 81 Gl~~~f~~~-~n--Pl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~-~~D 125 (125) |++|+|++. +| |++|+...+++.+++||||+|+|+|+||+.. +|| T Consensus 138 G~~~~f~~~~~~~~p~~~~~~~~~~~~~~nFFe~r~t~Y~k~~~~~~~d 186 (191) T 1r2f_A 138 GYEALFPPEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVETED 186 (191) T ss_dssp TCCCCSCTTTSCCCHHHHHHHCC-------------------------- T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCC T ss_conf 9998889766888965899865145745888778755412057788832 No 4 >>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} (A:139-329) Probab=99.97 E-value=1e-31 Score=213.31 Aligned_cols=122 Identities=19% Similarity=0.198 Sum_probs=112.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) +|||++|+.+++.|+++++.|+|+.+++++.++|++++++||++|.+|++++++ .|++++++++||+|+||+||++| T Consensus 61 ~rDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~~~~~ave~E~~~~~~~~~---~g~~~~~~~~yi~y~an~~L~~l 137 (191) T 3dhz_A 61 IRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYD---DLGWTEDVKRFLRYNANKALNNL 137 (191) T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTTCHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHC T ss_conf 620588999999999999763889889988999999999999999999998864---56549999999999999999977 Q ss_pred CCCCCCCCC---CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC-CCC Q ss_conf 978788987---888689999834665732131003333430657-789 Q gi|254780136|r 81 GLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 125 (125) Q Consensus 81 Gl~~~f~~~---~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~-~~D 125 (125) |++|+|++. .||++|+...+++.+++||||+|||+|+||+.. +|| T Consensus 138 Gl~~~y~~~~~~~~p~~~~~~~~~~~~~~nFFe~r~t~Y~k~~~~~~~d 186 (191) T 3dhz_A 138 GYEGLFPTDETKVSPAILSSLSPNADENHDFFSGSGSSYVIGKAEDTTD 186 (191) T ss_dssp TCCCSSCGGGCCCCHHHHHHHC--------------------------- T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 9999899877889837898753024656787747744340022577754 No 5 >>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (A:1-103,A:228-419) Probab=99.97 E-value=2.1e-31 Score=211.34 Aligned_cols=114 Identities=32% Similarity=0.563 Sum_probs=104.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) .|||++|+.|++.||+.++.+. .++.+.+++++||++|.+|++++++.+++|++++++++||+|+||+||.+| T Consensus 166 ~RDE~lH~~f~~~L~~~l~~e~-------~~e~v~el~~eAvelE~ef~~~~l~~~~lGi~~e~i~qYIkY~AN~~L~~L 238 (295) T 1jk0_A 166 CRDEGLHTDFACLLFAHLKNKP-------DPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAF 238 (295) T ss_dssp HHHHHHHHHHHHHHHHTCSSCC-------CHHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 9899999999999999864032-------188999999999999999999853788579999999999999999999976 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 9787889878886899998346657321310033334306577 Q gi|254780136|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125) Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125) |++++|++ +||+|||+..+ ..+++||||+||++|+||+..+ T Consensus 239 G~e~~F~~-~NP~~wme~~~-d~~ktNFFE~rvs~YqK~~~~~ 279 (295) T 1jk0_A 239 GNKKYYKV-ENPFDFMENIS-LAGKTNFFEKRVSDYQKAGVMS 279 (295) T ss_dssp TCCCSSCC-CCCCGGGGC------------------------- T ss_pred CCCCCCCC-CCCCHHHHHHC-CCCCCCCCCCCHHHHHHCCCCC T ss_conf 99987999-99825888724-5788787678788787624776 No 6 >>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str} (A:162-349) Probab=99.97 E-value=1.9e-31 Score=211.56 Aligned_cols=114 Identities=31% Similarity=0.617 Sum_probs=104.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) +|||++|+.+++.+++.++.+.| ++.+++|+++||++|++|++++++.+++|+|++++++||+|+||+||++| T Consensus 62 ~rDE~~H~~~~~~l~~~l~~e~~-------~~~~~~l~~eav~~E~~~~~~~~~~~~~gi~~~~~~~yi~y~an~~L~~l 134 (188) T 2p1i_A 62 SRDEGLHTDFNCLIYSLLENKLP-------ENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECL 134 (188) T ss_dssp HHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHTTTSCSTTTTCCHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 66677768899899999982498-------99999899999999999999970435212006779999999999999977 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 9787889878886899998346657321310033334306577 Q gi|254780136|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125) Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125) |++|+|+. +||+|||+.+. ..+++||||+|+|+|+||+..+ T Consensus 135 G~~~~f~~-~nP~~w~~~~~-~~~~~nFFE~~~t~Y~k~~~~~ 175 (188) T 2p1i_A 135 GCSKVFHS-KNPFNWMDLIS-LQGKTNFFEKRVADYQKSGVMA 175 (188) T ss_dssp TCCCSSCC-CCSCCC---------------------------- T ss_pred CCCCCCCC-CCCCCCHHHCC-CCCCCCCCCCCHHHHHCCCCCC T ss_conf 99999999-99965055515-6745578877765630366667 No 7 >>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} (A:219-390) Probab=99.97 E-value=3.9e-31 Score=209.70 Aligned_cols=114 Identities=32% Similarity=0.639 Sum_probs=104.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) +|||++|+.+++.+++.++.|.| +..+++|+++||++|.+|++++++.+++|++++++++||+|+||+||.+| T Consensus 46 ~RDE~~H~~~~~~l~~~l~~e~~-------~~~~~~l~~eav~~E~~~~~~~~~~~~~g~~~~~~~~yi~y~an~~L~~L 118 (172) T 1h0o_A 46 SRDEGLHCDFACLMFKHLVHKPA-------EQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 118 (172) T ss_dssp HHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 98899999999999998750238-------99999999998999999999966897479799999999999999999977 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 9787889878886899998346657321310033334306577 Q gi|254780136|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125) Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125) |++|+|++ +||+||++.+ ..++++||||+|+|+|+||+..+ T Consensus 119 G~~~~y~~-~nP~~~~~~~-~~~~~~nFFe~~~t~Y~k~~~~~ 159 (172) T 1h0o_A 119 GFNKIFRV-ENPFDFMENI-SLEGKTNFFEKRVGEYQRMGVMS 159 (172) T ss_dssp TCCCSSCC-CCSCGGGC-------------------------- T ss_pred CCCCCCCC-CCCHHHHHHC-CCCCCCCCCCCCHHHHHHCCCCC T ss_conf 99998999-9985789861-25677577656578664356678 No 8 >>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (B:147-345) Probab=99.97 E-value=1.4e-31 Score=212.38 Aligned_cols=114 Identities=23% Similarity=0.474 Sum_probs=104.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) .|||++|+.+++.|+++++++.| ++.+++++++||++|.+|++++++.+++|++++++++||+|+||+||++| T Consensus 71 ~RDE~~H~~~~~~l~~~l~~e~~-------~~~i~~l~~eave~E~~~~~~~~~~~~~g~~~~~~~~yi~y~an~~L~~l 143 (199) T 1jk0_B 71 CRDRGAYTDFSCLLFAHLRTKPN-------PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGF 143 (199) T ss_dssp HHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHTTSCC-----------CTHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 74799999999999998612211-------77999999999999999998544545337589999999999999999977 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 9787889878886899998346657321310033334306577 Q gi|254780136|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125) Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125) |++|+|+. +||+|||..+++ .+++||||+|+|+|+||++.+ T Consensus 144 G~~~~f~~-~nP~~~~~~~~~-~~~~nFFe~~~t~Y~k~~~~~ 184 (199) T 1jk0_B 144 GNEKYYNA-VNPFEFMEDVAT-AGKTTFFEKKVSDYQKASDMS 184 (199) T ss_dssp TCCCCC------------------------------------- T ss_pred CCCCCCCC-CCCHHHHHHHHC-CCCCCCCCCCHHHHHCCCCCC T ss_conf 99987899-997579998737-577655677655310244566 No 9 >>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} (A:) Probab=99.97 E-value=1.6e-30 Score=205.96 Aligned_cols=125 Identities=26% Similarity=0.370 Sum_probs=113.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHH Q ss_conf 9403789999999999999677000311----229999999999999999985763087-60188999999999999999 Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANR 75 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~----~~~~~i~~~~~eave~E~~~~~~~~~~-~~~Gl~~~~~~~Yiky~an~ 75 (125) +|||++|+.|++.+++.++.+.|+.+++ ++.+.+++++++||++|.+|++++++. +++|++++.+++||+|+||+ T Consensus 235 ~RDE~~H~~f~~~l~~~l~~e~~~~~~~~~~~e~~~~v~~l~~eav~~E~~~~~~~~~~~~i~g~~~~~~~~yi~y~an~ 314 (375) T 1mxr_A 235 ARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNI 314 (375) T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 85399999999999999984279635889889999999999999999999999998457885898999999999999999 Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHCCC-CCCCCCCCCHHHHHHHCCCC-CC Q ss_conf 9998597878898788868999983466-57321310033334306577-89 Q gi|254780136|r 76 RCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELK-WD 125 (125) Q Consensus 76 rL~~lGl~~~f~~~~nPl~W~~~~~~~~-~~~nFFE~r~t~Y~k~~~~~-~D 125 (125) ||.+||++++|+..+||+||+..+++.. +++||||+|+|+|++|+..+ || T Consensus 315 ~L~~lG~~~~f~~~~~p~~~~~~~~~~~~~~~nFFe~~~t~Y~~~~~~~~~d 366 (375) T 1mxr_A 315 RMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVD 366 (375) T ss_dssp HHHHTTCCCCSCCCCCSCGGGGGTC--------------------------- T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCC T ss_conf 9997799999999999856899987138875487668710012335567677 No 10 >>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} (A:) Probab=99.92 E-value=2.1e-25 Score=174.86 Aligned_cols=116 Identities=15% Similarity=0.069 Sum_probs=108.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) +|||++|+.||+.+++.++.|.|+.+ ++..+.+++++.+||++|.+|+.++++.+++|++++.+.+|++|++|+||..+ T Consensus 208 ~rDE~~H~~f~~~~~~~l~~e~~e~~-~~~~e~~~~~~~~~v~~e~~~~~~~~~~~~~g~~~~~~~~y~~~~~~~~l~~l 286 (323) T 3ee4_A 208 GDDERRHMAWGTFTCRRHVAADDANW-TVFETRMNELIPLALRLIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTI 286 (323) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTTCCSTTCCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 80488999999999999986395030-69999999999999999999988627776679999999999999999987994 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCC Q ss_conf 97878898788868999983466573213100333343065 Q gi|254780136|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 121 (125) Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~ 121 (125) |+++.|+...+|++|+. ..+++||||+|+|+|+|||+ T Consensus 287 g~~~~~~~~~~~~~~~~----~~~~~nFFe~~~~~Y~~~~a 323 (323) T 3ee4_A 287 SNARGRPVAEIDVDYSP----AQLEDTFADEDRRTLAAASA 323 (323) T ss_dssp HTTTTCCGGGTCC---------------------------- T ss_pred CCCCCCCHHHCCCCCCH----HHHHHHHHHHHHHHHHHHCC T ss_conf 22346984433676897----99999988989999876149 No 11 >>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} (A:161-311) Probab=99.90 E-value=3e-24 Score=167.89 Aligned_cols=89 Identities=29% Similarity=0.603 Sum_probs=83.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) +|||++|+.|++.++++++.+.| ++.+.+|+++||++|.+|++++++.+.+|++++++++||+|+||+||.+| T Consensus 62 ~RDE~lH~~~~~~l~~~l~~e~~-------~~~~~~~~~eave~E~~~~~~~~~~~~~g~~~~~i~~yi~y~an~~l~~L 134 (151) T 2o1z_A 62 SRDEGLHTDFNCLIYSLLENKLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECL 134 (151) T ss_dssp HHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHTTBTTTBCCTTTTCCHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 40256668899999999874599-------99999999999999999999966798689999999999999999999977 Q ss_pred CCCCCCCCCCCCHHHHH Q ss_conf 97878898788868999 Q gi|254780136|r 81 GLEPLFKYTENPFPWMS 97 (125) Q Consensus 81 Gl~~~f~~~~nPl~W~~ 97 (125) |++++|++ +||+|||+ T Consensus 135 G~~~~y~~-~nP~~w~e 150 (151) T 2o1z_A 135 GSPKIFHA-KNPFNWMD 150 (151) T ss_dssp TCCCSSCC-CCCCTTTT T ss_pred CCCCCCCC-CCCCCCCC T ss_conf 99998999-99986515 No 12 >>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A (A:) Probab=98.76 E-value=2.6e-09 Score=77.04 Aligned_cols=102 Identities=11% Similarity=0.099 Sum_probs=86.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHHHHHHHH Q ss_conf 94037899999999999996770003112299999999999999999857630876018899-99999999999999998 Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA-PSCEQYMQFIANRRCHQ 79 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~-~~~~~Yiky~an~rL~~ 79 (125) +|||+.|+.|++.+++.+..+.|....+.+.+.+..++..++..|..+..+++ ..+|++. +.+.+|++|.+|+++.. T Consensus 224 ~rDE~~H~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~Gl~~~~~~~~~~~~~~~~~~~~ 301 (336) T 3chh_A 224 LRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFAEQDLSALLLEL--NAAGIRGAEEIVGDLRSTAGGTRLV 301 (336) T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCCTHHHHHHH--HHHTCTTHHHHHHHCC-------CC T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH--HHCCCCHHHHHHHHHHCHHHHHHHH T ss_conf 99999999999999999998699999999999999999999861324779999--8869987999999872958789999 Q ss_pred CCCCCCCCCCCCCHHHHHHH-HCCCCCCCCCCC Q ss_conf 59787889878886899998-346657321310 Q gi|254780136|r 80 IGLEPLFKYTENPFPWMSEV-IDLKKEKNFFET 111 (125) Q Consensus 80 lGl~~~f~~~~nPl~W~~~~-~~~~~~~nFFE~ 111 (125) +|++ ++++|+++. +.+.-...|+++ T Consensus 302 ~~~~-------~~~~~l~~~Gl~~~~~~~~~~~ 327 (336) T 3chh_A 302 RDFS-------GARKMVEQLGLDDAVDFDFPER 327 (336) T ss_dssp CBCH-------HHHHHHHHTTCTTTCCCCCCCC T ss_pred HHHH-------HHHHHHHHCCCCCCCCCCCCCC T ss_conf 9888-------8999999848988999986768 No 13 >>2oc5_A Hypothetical protein; NP_895059.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 1.68A {Prochlorococcus marinus str} (A:) Probab=92.99 E-value=0.71 Score=25.76 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=43.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9403789999999999999677000311229999999999999999985763087-601889999999999999999998 Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQ 79 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~-~~~Gl~~~~~~~Yiky~an~rL~~ 79 (125) |+||.+|+.||..-++.-. +.+++++.+.-++..-+-..-.+.+-.+ .++|+.++.+.+=.--.-...|.. T Consensus 155 VkDEY~HLN~Ge~WLk~~f--------~~~k~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~Y~eAL~~ 226 (244) T 2oc5_A 155 VKDEYTHLNYGEAWLKANL--------ESCREELLEANRENLPLIRRXLDQVAGDAAVLQXDKEDLIEDFLIAYQESLTE 226 (244) T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 6436766015899999999--------99999999988850649999999999889997688999999999999999997 Q ss_pred CCCC Q ss_conf 5978 Q gi|254780136|r 80 IGLE 83 (125) Q Consensus 80 lGl~ 83 (125) ||+. T Consensus 227 IGf~ 230 (244) T 2oc5_A 227 IGFN 230 (244) T ss_dssp HTCC T ss_pred CCCC T ss_conf 5975 No 14 >>1za0_A Possible acyl-[acyl-carrier protein] desaturase DESA2 (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle; 2.00A {Mycobacterium tuberculosis H37RV} (A:) Probab=58.32 E-value=14 Score=17.89 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=42.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 40378999999999999967700031122999999999999999---998576308760188999999999999999999 Q gi|254780136|r 2 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 78 (125) Q Consensus 2 RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E---~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~ 78 (125) +||.-|..|+..+++.+.+.+|.. ....+..++......- ..|.+...-..-.|+.. ..+...+....++ T Consensus 187 ~DE~rH~~f~~~~~~~~l~~~p~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~y~---~~~~~~v~~~~~~ 259 (275) T 1za0_A 187 RDEVRHEEFFANLVTHCLDYTRDE----TIAAIAARAADLDVLGADIEAYRDKLQNVADAGIFG---KPQLRQLISDRIT 259 (275) T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHH----HHHHHHHHHHHCCCTTTTSTTCHHHHHHHHHTTSSS---HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC---HHHHHHHHHHHHH T ss_conf 889999999999999998658087----999999999707998887876789999999968998---8999999999999 Q ss_pred HCCCCCCC Q ss_conf 85978788 Q gi|254780136|r 79 QIGLEPLF 86 (125) Q Consensus 79 ~lGl~~~f 86 (125) .+|+.++= T Consensus 260 ~~~~~~~~ 267 (275) T 1za0_A 260 AWGLAGEP 267 (275) T ss_dssp HTTCTTCG T ss_pred HHCCCCHH T ss_conf 82888713 No 15 >>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier protein desaturase; electron transfer, four-helix bundle, oxidoreductase; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 1afr_A 2j2f_A (A:156-321) Probab=50.76 E-value=19 Score=17.14 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 40378999999999999967700 Q gi|254780136|r 2 RDESLHLNFGIDVINQIKIENPH 24 (125) Q Consensus 2 RDE~lH~~~~~~l~~~l~~e~pe 24 (125) +||..|..|..+++..+..-.|+ T Consensus 47 ~DE~RH~~fY~~~v~~~le~dPd 69 (166) T 2uw1_A 47 SDEKRHATAYTKIVEKLAEIDPD 69 (166) T ss_dssp HHHHHHHHHHHHHHHHHHHHCHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCH T ss_conf 78999999999999999843817 No 16 >>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A (A:1-349,A:476-500) Probab=38.45 E-value=29 Score=15.97 Aligned_cols=81 Identities=17% Similarity=0.072 Sum_probs=47.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHCCCCCCCCC-HHHHHHHHHHHHHHH Q ss_conf 4037899999999999996770003112299999999999999999857----63087601889-999999999999999 Q gi|254780136|r 2 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH----ETMPKGFVGLN-APSCEQYMQFIANRR 76 (125) Q Consensus 2 RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~----~~~~~~~~Gl~-~~~~~~Yiky~an~r 76 (125) +||.-|...+..+++.+..+... +..++.+-..+-.+...=..+.- +..+.+..-.+ .+.+.+-+.-....+ T Consensus 229 ~de~rH~~~g~~ll~~l~~~~nr---~~lQ~ald~w~~ra~~af~~~~~~~~d~~~~~~~~~~~~~e~~~d~~~~~~~~~ 305 (374) T 3ge3_A 229 TDESRHAQQGGPALQLLIENGKR---EEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSFKEFMYEWIIGQFERS 305 (374) T ss_dssp HHHHHHGGGHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSCHHHHHHHHTTTTHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 89999998589999999967766---999999999999889999988888888448663225349999999988999999 Q ss_pred HHHCCCCCC Q ss_conf 998597878 Q gi|254780136|r 77 CHQIGLEPL 85 (125) Q Consensus 77 L~~lGl~~~ 85 (125) |..+||..+ T Consensus 306 L~~lGL~~P 314 (374) T 3ge3_A 306 LIDLGLDKP 314 (374) T ss_dssp HHHTTCCCC T ss_pred HHHHCCCCC T ss_conf 998279986 No 17 >>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli K12} (A:82-219) Probab=28.46 E-value=43 Score=14.96 Aligned_cols=76 Identities=9% Similarity=0.095 Sum_probs=53.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------CCCCHHHHHHHHHH Q ss_conf 940378999999999999967700031122999999999999999998576308760---------18899999999999 Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF---------VGLNAPSCEQYMQF 71 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~---------~Gl~~~~~~~Yiky 71 (125) +++|.-|..++...+..+..-- ++-++.+++|++.=..++..+|+.+. ++.+.+.+++--.- T Consensus 47 ~kEe~yH~~h~~~w~~rL~~gt---------~Es~~rmq~Al~~~wp~~~elF~~~~~~~~l~~~Gi~~~~~~Lr~~w~~ 117 (138) T 1otk_A 47 IKEARYHLRFSRGWLERLGNGT---------DVSGQKMQQAINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEA 117 (138) T ss_dssp HHHHHHHHHHHHHHHHHHHTSC---------HHHHHHHHHHHHHHGGGTGGGGCCCHHHHHHHHTTSSCCGGGGHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCC---------HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 8999999999999999998568---------9999999999999989886644778268999887898987999999999 Q ss_pred HHHHHHHHCCCCCC Q ss_conf 99999998597878 Q gi|254780136|r 72 IANRRCHQIGLEPL 85 (125) Q Consensus 72 ~an~rL~~lGl~~~ 85 (125) .....|..+||+-+ T Consensus 118 ~v~~~l~~agL~~P 131 (138) T 1otk_A 118 EVFAGINEATLNVP 131 (138) T ss_dssp HHHHHHHHTTCCCC T ss_pred HHHHHHHHHCCCCC T ss_conf 99999998089999 No 18 >>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824} (A:81-203) Probab=25.69 E-value=48 Score=14.66 Aligned_cols=47 Identities=4% Similarity=0.021 Sum_probs=36.6 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99999999985763087601889999999999999999998597878 Q gi|254780136|r 39 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 85 (125) Q Consensus 39 ~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~lGl~~~ 85 (125) ++++++=.-.....+..++...+++.+.+.+++.....=+.+|++.. T Consensus 71 ~E~ae~ll~l~n~~ld~~~~~~~~ee~~~ri~~~~~~ler~lG~~~~ 117 (123) T 3b81_A 71 LETAEIILTLSHFYLDEDLFKWKKEDXSLKLTAFKETLIKILDADED 117 (123) T ss_dssp HHHHHHHHHHHHTTTCHHHHTCCGGGHHHHHHHHHHHHHHHHTCCTT T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 99999999999999999987337432999999999999998689966 No 19 >>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} (B:) Probab=24.51 E-value=17 Score=17.36 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=22.0 Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 99999857630876018899999999999 Q gi|254780136|r 43 LLEIAYAHETMPKGFVGLNAPSCEQYMQF 71 (125) Q Consensus 43 e~E~~~~~~~~~~~~~Gl~~~~~~~Yiky 71 (125) ++..+|...+..-.-.||+.+.+..|+.- T Consensus 10 eLD~EWveLi~eA~eagis~eeiR~fL~~ 38 (57) T 1b0n_B 10 ELDQEWVELMVEAKEANISPEEIRKYLLL 38 (57) T ss_dssp CCCHHHHHHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 98899999999999949999999999982 Done!