RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate
reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)



>gnl|CDD|180886 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit
           beta; Validated.
          Length = 369

 Score =  244 bits (626), Expect = 3e-66
 Identities = 84/125 (67%), Positives = 100/125 (80%)

Query: 1   MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
           +RDES+HLNFGID+INQIK+ENPHLWT EFQ + R ++ EA  LE  YA +TMP+G +GL
Sbjct: 245 LRDESMHLNFGIDLINQIKLENPHLWTAEFQAEIRELIKEAVELEYRYARDTMPRGVLGL 304

Query: 61  NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
           NA   + Y++FIANRR  QIGL+P +  TENPFPWMSE+IDLKKEKNFFETRV EYQ G 
Sbjct: 305 NASMFKDYLRFIANRRLQQIGLKPQYPGTENPFPWMSEMIDLKKEKNFFETRVIEYQTGG 364

Query: 121 ELKWD 125
            L WD
Sbjct: 365 ALSWD 369


>gnl|CDD|181991 PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta;
           Reviewed.
          Length = 324

 Score = 89.9 bits (224), Expect = 2e-19
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 6/127 (4%)

Query: 2   RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 61
           RDESLH  +   +  +   E P L  +E + +   +L+E    E AY         VGL 
Sbjct: 196 RDESLHGYYIGYLFQEGLEELPELEQEELKDEIYDLLYELYENEEAYTELLYDI--VGL- 252

Query: 62  APSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQG 119
           A   ++Y+++ AN+R   +GLEPLF +  E    W++ + +   E  +FFE + T Y +G
Sbjct: 253 AEDVKKYIRYNANKRLMNLGLEPLFPEEEEVNPIWLNGLSNNADENHDFFEGKGTSYVKG 312

Query: 120 A-ELKWD 125
           A E   D
Sbjct: 313 ATEATED 319


>gnl|CDD|178110 PLN02492, PLN02492, ribonucleoside-diphosphate reductase.
          Length = 324

 Score = 74.7 bits (184), Expect = 6e-15
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 9/117 (7%)

Query: 2   RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 61
           RDE LH +F   + +        L  K  +++ + ++ EA  +E  +  + +P   VG+N
Sbjct: 194 RDEGLHCDFACLLYS-------LLKNKLSEERVKEIVCEAVEIEKEFVCDALPCALVGMN 246

Query: 62  APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 118
           A    QY++F+A+R    +G E ++    NPF WM E+I L+ + NFFE RV EYQ+
Sbjct: 247 ADLMSQYIEFVADRLLVALGYEKVYN-VVNPFDWM-ELISLQGKTNFFEKRVGEYQK 301


>gnl|CDD|173476 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small
           subunit; Provisional.
          Length = 330

 Score = 74.4 bits (183), Expect = 8e-15
 Identities = 36/117 (30%), Positives = 69/117 (58%), Gaps = 9/117 (7%)

Query: 2   RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 61
           RDE LH +F   + + +K + P       +++ + ++ EA  +E  +  + +P   +G+N
Sbjct: 205 RDEGLHTDFACLLYSHLKNKLP-------RERVQEIIKEAVEIEREFICDALPVDLIGMN 257

Query: 62  APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 118
           +    QY++F+A+R    +G+  ++  ++NPF WM ++I L+ + NFFE RV EYQ+
Sbjct: 258 SRLMAQYIEFVADRLLVALGVPKIYN-SKNPFDWM-DMISLQGKTNFFEKRVGEYQK 312


>gnl|CDD|139206 PRK12759, PRK12759, bifunctional
           gluaredoxin/ribonucleoside-diphosphate reductase subunit
           beta; Provisional.
          Length = 410

 Score = 71.6 bits (175), Expect = 5e-14
 Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 2/127 (1%)

Query: 1   MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV-G 59
           +RDES+H+     +      ENP++   EF+++   M  +A  LE  +       G + G
Sbjct: 279 IRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDRFIELAYELGTIEG 338

Query: 60  LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ-Q 118
           L A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++     NFFE RVTEY+  
Sbjct: 339 LKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTNFFENRVTEYEVA 398

Query: 119 GAELKWD 125
           G    WD
Sbjct: 399 GLTGSWD 405


>gnl|CDD|181647 PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta;
           Reviewed.
          Length = 376

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 2   RDESLHLNFGIDVIN--QIKIENPHLW--TKEFQQKSRTMLHEATLLEIAYAHETMPKG- 56
           RDE+LHL     ++N  +   ++P +    +E +Q+   +  +A   E  +A      G 
Sbjct: 237 RDEALHLTGTQHMLNLMRSGKDDPEMAEIAEECKQECYDLFVQAAEQEKEWADYLFKDGS 296

Query: 57  FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 96
            +GLN     QY+++I N R   +GL+  F+   NP PW+
Sbjct: 297 MIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWI 336


>gnl|CDD|179678 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.
          Length = 450

 Score = 28.9 bits (66), Expect = 0.34
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 65  CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS--EVID-LKKEKNFFE 110
           C   ++F+ NRR  +  +E L  + E+PFP ++  E I+ L+K    FE
Sbjct: 265 CPDDLEFL-NRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFE 312


>gnl|CDD|177822 PLN02164, PLN02164, sulfotransferase.
          Length = 346

 Score = 28.0 bits (62), Expect = 0.68
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 9/51 (17%)

Query: 72  IANRRCHQIGLEPLFK--------YTENPFPWMSEVIDLKKEKN-FFETRV 113
           IANR        PL K        Y E  FP+   V  LK + N  F T +
Sbjct: 102 IANRSRFDDSSNPLLKRNPHEFVPYIEIDFPFFPSVDVLKDKGNTLFSTHI 152


>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
          Length = 468

 Score = 26.1 bits (58), Expect = 2.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)

Query: 39  HEATLLEIAYAHE 51
            EATLLE+AY  E
Sbjct: 447 DEATLLELAYELE 459


>gnl|CDD|150590 pfam09935, DUF2167, Protein of unknown function (DUF2167).  This
          domain, found in various hypothetical membrane-anchored
          prokaryotic proteins, has no known function.
          Length = 275

 Score = 25.0 bits (55), Expect = 4.9
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 49 AHETMPKGFVGLNAPSCEQYMQFIANR 75
          A   +P GF  LN    E+ ++   N 
Sbjct: 50 ATLNLPDGFYFLNPADAEKLLELWGNP 76


>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
            
          Length = 1394

 Score = 24.3 bits (53), Expect = 7.9
 Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 7/42 (16%)

Query: 90   ENPFPWMSEVIDL----KKEKNFFETRVT--EYQQ-GAELKW 124
             NP  WM EVI         +++ E      EYQ    EL  
Sbjct: 1011 ANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDR 1052


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,026,103
Number of extensions: 112166
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 22
Length of query: 125
Length of database: 5,994,473
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,222,617
Effective search space: 181572531
Effective search space used: 181572531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)