RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (125 letters) >d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Length = 317 Score = 94.8 bits (235), Expect = 2e-21 Identities = 50/96 (52%), Positives = 69/96 (71%), Gaps = 1/96 (1%) Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 +RDE++HLNFGID+IN IK ENP +WT E QQ+ ++ A LEI YA + +P+G +GL Sbjct: 223 LRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGL 282 Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 96 A Y+Q IA+RR +IGL+P++ T+NPFPWM Sbjct: 283 RASMFIDYVQHIADRRLERIGLKPIYH-TKNPFPWM 317 >d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Length = 339 Score = 81.4 bits (200), Expect = 2e-17 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 5/103 (4%) Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG 56 RDE+LHL ++N ++ E +Q+ + +A E +A G Sbjct: 235 ARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDG 294 Query: 57 -FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 98 +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 295 SMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINT 337 >d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Length = 334 Score = 76.7 bits (188), Expect = 5e-16 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 8/96 (8%) Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 RDE LH +F + +K + ++ ++ EA +E Y + +P +G+ Sbjct: 245 CRDEGLHTDFACLLFAHLKNKPDPAIVEK-------IVTEAVEIEQRYFLDALPVALLGM 297 Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 96 NA QY++F+A+R G + +K ENPF +M Sbjct: 298 NADLMNQYVEFVADRLLVAFGNKKYYK-VENPFDFM 332 >d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 Score = 67.1 bits (163), Expect = 4e-13 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 8/93 (8%) Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 RDE LH +F + + + R ++ A +E + E +P +G+ Sbjct: 197 SRDEGLHCDFACLMFKHLVHKPAEQRV-------REIITNAVRIEQEFLTEALPVKLIGM 249 Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 93 N +QY++F+A+R ++G +F+ ENPF Sbjct: 250 NCTLMKQYIEFVADRLMLELGFNKIFR-VENPF 281 >d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 284 Score = 60.5 bits (146), Expect = 4e-11 Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 +RDES+H + Q + +E++ + ++++ EI Y + +G Sbjct: 186 IRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDD--LGW 243 Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PW 95 ++++++ AN+ + +G E LF E P Sbjct: 244 TE-DVKRFLRYNANKALNNLGYEGLFPTDETKVSPA 278 >d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Length = 285 Score = 60.6 bits (146), Expect = 4e-11 Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 22 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 81 HL TK + ++ EA +E Y ++P G++ S Y++F+A+ G Sbjct: 221 FAHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFG 280 Query: 82 LEPLF 86 E + Sbjct: 281 NEKYY 285 >d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Length = 283 Score = 57.1 bits (137), Expect = 4e-10 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 8/102 (7%) Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 +RDE++H + + + +E + + +L E EI Y + Sbjct: 184 IRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALYAET---G 240 Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP--FPWMS 97 + ++ + AN+ +G E LF NP +S Sbjct: 241 WVNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 282 >g1pya.1 d.155.1.1 (A:,B:) Histidine decarboxylase {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 310 Score = 25.2 bits (55), Expect = 1.8 Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%) Query: 46 IAYAHETMPKGFVGLNAPSCEQY 68 I +A+ M G +G NA + Y Sbjct: 241 IGFAYTMMEPGQIG-NAITVAPY 262 >d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]} Length = 222 Score = 24.0 bits (52), Expect = 3.8 Identities = 6/11 (54%), Positives = 9/11 (81%) Query: 1 MRDESLHLNFG 11 ++DE HLN+G Sbjct: 135 VKDEYTHLNYG 145 >d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]} Length = 166 Score = 23.6 bits (51), Expect = 5.3 Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%) Query: 84 PLFKYTENPFPWMSEVIDLKKEK 106 P E+ PW S V D+K+E Sbjct: 6 PKLDQLESG-PWPSFVSDIKQEA 27 >d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]} Length = 166 Score = 22.8 bits (49), Expect = 9.9 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%) Query: 84 PLFKYTENPFPWMSEVIDLKKEK 106 PL E PW S V ++KK Sbjct: 4 PLLDELEKG-PWPSFVKEIKKTA 25 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.135 0.421 Gapped Lambda K H 0.267 0.0610 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 472,180 Number of extensions: 19434 Number of successful extensions: 47 Number of sequences better than 10.0: 1 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 16 Length of query: 125 Length of database: 2,407,596 Length adjustment: 75 Effective length of query: 50 Effective length of database: 1,377,846 Effective search space: 68892300 Effective search space used: 68892300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (22.5 bits)