BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (125 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 268 bits (684), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 125/125 (100%), Positives = 125/125 (100%) Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL Sbjct: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA Sbjct: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 Query: 121 ELKWD 125 ELKWD Sbjct: 348 ELKWD 352 >gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 268 bits (684), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 125/125 (100%), Positives = 125/125 (100%) Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL Sbjct: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA Sbjct: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 Query: 121 ELKWD 125 ELKWD Sbjct: 348 ELKWD 352 >gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 125 Score = 265 bits (677), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 125/125 (100%), Positives = 125/125 (100%) Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL Sbjct: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA Sbjct: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120 Query: 121 ELKWD 125 ELKWD Sbjct: 121 ELKWD 125 >gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 125 Score = 265 bits (677), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 125/125 (100%), Positives = 125/125 (100%) Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL Sbjct: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA Sbjct: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120 Query: 121 ELKWD 125 ELKWD Sbjct: 121 ELKWD 125 >537021.9.peg.75_1 Length = 136 Score = 263 bits (672), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 124/125 (99%), Positives = 124/125 (99%) Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL Sbjct: 12 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 71 Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA Sbjct: 72 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 131 Query: 121 ELKWD 125 LKWD Sbjct: 132 GLKWD 136 >537021.9.peg.612_1 Length = 53 Score = 32.7 bits (73), Expect = 0.002, Method: Compositional matrix adjust. Identities = 14/17 (82%), Positives = 15/17 (88%) Query: 100 IDLKKEKNFFETRVTEY 116 +DLKKE NFFETR TEY Sbjct: 37 MDLKKENNFFETRTTEY 53 >gi|254781122|ref|YP_003065535.1| putative thiamine pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62] Length = 222 Score = 23.5 bits (49), Expect = 1.4, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Query: 11 GIDVINQIKIENPHLWTKEFQQKSRTMLHE 40 GI +Q+K+ P LW +F RT+L + Sbjct: 41 GICHASQLKVV-PELWIGDFDSVDRTLLQQ 69 >gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter asiaticus str. psy62] Length = 762 Score = 23.1 bits (48), Expect = 1.8, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 20/39 (51%) Query: 55 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 93 +G + A + E+Y++ I N H + L +T+N F Sbjct: 518 EGIAQVYAATDEKYIKTIPNEDSHSLVLNSTSLFTQNRF 556 >gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 1162 Score = 22.7 bits (47), Expect = 2.5, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Query: 78 HQIGLEPLFKYTEN---PFPWMSEVIDLKKEKNFFETRVTE 115 HQ+GL P+FK + F + + E NF V+E Sbjct: 572 HQMGLHPVFKCVDTCAGEFSSPTSYMYSTYETNFINKPVSE 612 >gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 957 Score = 22.3 bits (46), Expect = 3.3, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 10/55 (18%) Query: 39 HEATLLEIAYAH----------ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 83 H+ L E++ AH + KG +GL + + + + +++ C IG+E Sbjct: 126 HQKDLSELSPAHYGFVKADYDRKICMKGVLGLESATIPEIVDVLSHLYCSNIGVE 180 >gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 21.9 bits (45), Expect = 3.3, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 15/32 (46%) Query: 63 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 94 PS E + R HQI LEP T+ +P Sbjct: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307 >gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 21.2 bits (43), Expect = 6.6, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 58 VGLNAPSCEQYMQFIANRR 76 + L+ PSC Q +FI ++ Sbjct: 23 IRLSGPSCFQVCEFICKKK 41 >gi|254781167|ref|YP_003065580.1| tRNA-dihydrouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] Length = 322 Score = 20.8 bits (42), Expect = 8.2, Method: Compositional matrix adjust. Identities = 8/18 (44%), Positives = 12/18 (66%) Query: 9 NFGIDVINQIKIENPHLW 26 N D++ +IK ENP L+ Sbjct: 173 NLDYDIVYEIKKENPDLF 190 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.135 0.421 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,549 Number of Sequences: 1233 Number of extensions: 3010 Number of successful extensions: 15 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 14 length of query: 125 length of database: 328,796 effective HSP length: 64 effective length of query: 61 effective length of database: 249,884 effective search space: 15242924 effective search space used: 15242924 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 33 (17.3 bits)