HHsearch alignment for GI: 254780137 and conserved domain: COG3288
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion].
Probab=93.41 E-value=0.084 Score=31.46 Aligned_cols=148 Identities=16% Similarity=0.228 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHHH----------HCCCHHHCEEEEECCCHHHHHHHHHHHHCCC----------CCCCEEEEECCCE
Q ss_conf 1899999999999997----------0988224117874254256789999998198----------8575899955960
Q gi|254780137|r 180 GTAVTVTAATLNGMKL----------VGKKFSDIKIVTLGAGAAALACLNLLVTMGV----------RRENIWVYDLEGL 239 (779)
Q Consensus 180 GTa~v~lA~llnAl~~----------~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~----------~~~~i~~~D~~Gl 239 (779)
T Consensus 132 ~aNaigy~aVi~Aa~a~~rffpm~~TAagtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~ 211 (356)
T COG3288 132 QANAIGYIAVIGAALAYGRFFPMQITAAGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFL 211 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCCCC
T ss_conf 54355689999999874212531100024256304333358899999999986546387613311677653452255545
Q ss_pred EECC---CCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECC------CCCCCCHHHHHHCCCCCEEEEECCCCC---CC
Q ss_conf 3078---73326678897745088988888605883786257------887789889972189977999178720---09
Q gi|254780137|r 240 VYEG---REKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLS------VAGALDPAILKFMAEKPLIMVLANPNP---EA 307 (779)
Q Consensus 240 i~~~---r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S------~~g~~t~e~v~~M~~~PiIfaLsNP~p---Ei 307 (779)
T Consensus 212 ~~~~ee~~gGYAk~ms~~~~~-~q~~~~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~ 290 (356)
T COG3288 212 AVEDEESAGGYAKEMSEEFIA-KQAELVAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCEL 290 (356)
T ss_pred CCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHCCCCCCC
T ss_conf 655112578755438999999-9999999884478889981445899874352799997448996899813222898655
Q ss_pred -CHHHHHHHCCCEEECCCCCCCCC
Q ss_conf -98899851898798058878877
Q gi|254780137|r 308 -MPDEIKKVRPDAMICTGRSDFSN 330 (779)
Q Consensus 308 -~p~~a~~~~g~aivatGrs~~pn 330 (779)
T Consensus 291 t~pg~~v~~~gV~ii--g~~nlp~ 312 (356)
T COG3288 291 TEPGKVVTKNGVKII--GYTNLPG 312 (356)
T ss_pred CCCCCEEEECCEEEE--EECCCCH
T ss_conf 669807874786999--6457611