HHsearch alignment for GI: 254780137 and conserved domain: COG3288

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion].
Probab=93.41  E-value=0.084  Score=31.46  Aligned_cols=148  Identities=16%  Similarity=0.228  Sum_probs=81.1

Q ss_pred             CHHHHHHHHHHHHHHH----------HCCCHHHCEEEEECCCHHHHHHHHHHHHCCC----------CCCCEEEEECCCE
Q ss_conf             1899999999999997----------0988224117874254256789999998198----------8575899955960
Q gi|254780137|r  180 GTAVTVTAATLNGMKL----------VGKKFSDIKIVTLGAGAAALACLNLLVTMGV----------RRENIWVYDLEGL  239 (779)
Q Consensus       180 GTa~v~lA~llnAl~~----------~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~----------~~~~i~~~D~~Gl  239 (779)
T Consensus       132 ~aNaigy~aVi~Aa~a~~rffpm~~TAagtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~  211 (356)
T COG3288         132 QANAIGYIAVIGAALAYGRFFPMQITAAGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFL  211 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCCCC
T ss_conf             54355689999999874212531100024256304333358899999999986546387613311677653452255545


Q ss_pred             EECC---CCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECC------CCCCCCHHHHHHCCCCCEEEEECCCCC---CC
Q ss_conf             3078---73326678897745088988888605883786257------887789889972189977999178720---09
Q gi|254780137|r  240 VYEG---REKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLS------VAGALDPAILKFMAEKPLIMVLANPNP---EA  307 (779)
Q Consensus       240 i~~~---r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S------~~g~~t~e~v~~M~~~PiIfaLsNP~p---Ei  307 (779)
T Consensus       212 ~~~~ee~~gGYAk~ms~~~~~-~q~~~~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~  290 (356)
T COG3288         212 AVEDEESAGGYAKEMSEEFIA-KQAELVAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCEL  290 (356)
T ss_pred             CCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHCCCCCCC
T ss_conf             655112578755438999999-9999999884478889981445899874352799997448996899813222898655


Q ss_pred             -CHHHHHHHCCCEEECCCCCCCCC
Q ss_conf             -98899851898798058878877
Q gi|254780137|r  308 -MPDEIKKVRPDAMICTGRSDFSN  330 (779)
Q Consensus       308 -~p~~a~~~~g~aivatGrs~~pn  330 (779)
T Consensus       291 t~pg~~v~~~gV~ii--g~~nlp~  312 (356)
T COG3288         291 TEPGKVVTKNGVKII--GYTNLPG  312 (356)
T ss_pred             CCCCCEEEECCEEEE--EECCCCH
T ss_conf             669807874786999--6457611