HHsearch alignment for GI: 254780137 and conserved domain: PRK00141
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=94.59 E-value=0.28 Score=27.84 Aligned_cols=85 Identities=15% Similarity=0.215 Sum_probs=50.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCC
Q ss_conf 17874254256789999998198857589995596030787332667889774508898888860588378625788778
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAGAL 283 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~g~~ 283 (779)
T Consensus 19 kvlV~GlG~SG~s~a~~L~~~G~---~v~~~D~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~~~ 89 (476)
T PRK00141 19 RVLVAGAGVSGLGIAKMLSELGC---DVVVADDNET---QR---HMLIEVVDVADISTAQASDALDSYSIVVTSPGWRPD 89 (476)
T ss_pred CEEEEEECHHHHHHHHHHHHCCC---EEEEEECCCC---HH---HHHHHHCCCCEECCCCHHHHHCCCCEEEECCCCCCC
T ss_conf 88999227889999999997899---7999989987---03---578874798565155306564689999989978997
Q ss_pred CHHHHHHCCCC-CEE
Q ss_conf 98899721899-779
Q gi|254780137|r 284 DPAILKFMAEK-PLI 297 (779)
Q Consensus 284 t~e~v~~M~~~-PiI 297 (779)
T Consensus 90 ~p~l~~a~~~gi~vi 104 (476)
T PRK00141 90 SPLLVDAQSAGLEVI 104 (476)
T ss_pred CHHHHHHHHCCCCEE
T ss_conf 999999998799577