HHsearch alignment for GI: 254780137 and conserved domain: PRK01438
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=92.82 E-value=0.6 Score=25.57 Aligned_cols=89 Identities=10% Similarity=0.156 Sum_probs=49.0
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC----CC-CCHHHHCCCCCE
Q ss_conf 8224117874254256789999998198857589995596030787332667889774508----89-888886058837
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS----GP-KPLSETMNNADV 273 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~----~~-~~l~ea~~~adv 273 (779)
T Consensus 11 ~~~gk~v~V~GlG~sG~s~a~~L~~~G~---~v~~~D~~-------~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~d~ 80 (481)
T PRK01438 11 DWSGLRVVVAGLGVSGFPAADALHELGA---SVTVVADG-------DDDRSRERAALLEVLGATVRLGDGETTLPEGTEL 80 (481)
T ss_pred HCCCCEEEEEEECHHHHHHHHHHHHCCC---EEEEEECC-------CCCCCHHHHHHHHHCCCEEEECCCHHHHHCCCCE
T ss_conf 7189989999575889999999996799---89999799-------8744868999888549889968875666248999
Q ss_pred EEECCCCCCCCHHHHHHCCCC-CEE
Q ss_conf 862578877898899721899-779
Q gi|254780137|r 274 FLGLSVAGALDPAILKFMAEK-PLI 297 (779)
Q Consensus 274 ~iG~S~~g~~t~e~v~~M~~~-PiI 297 (779)
T Consensus 81 vV~SPGI~~~~p~~~~a~~~gi~i~ 105 (481)
T PRK01438 81 VVTSPGWRPTHPLLAAAAEAGIPVW 105 (481)
T ss_pred EEECCCCCCCCHHHHHHHHCCCCEE
T ss_conf 9989978998999999998699386