HHsearch alignment for GI: 254780137 and conserved domain: TIGR03270
>TIGR03270 methan_mark_4 putative methanogen marker protein 4. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely linked to it. Some members have been suggested to be a methyltransferase, based on the proximity of its gene to genes of the multi-subunit complex, N5-methyl-tetrahydromethanopterin--coenzyme M methyltransferase. That context is not conserved, however. The family shows similarity to various phosphate acyltranferases.
Probab=99.97 E-value=1.3e-31 Score=237.15 Aligned_cols=186 Identities=16% Similarity=0.135 Sum_probs=156.5
Q ss_pred HHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 98657210010044677740467777763068766850121001355-77734999747368898988999999999999
Q gi|254780137|r 558 ALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSMCI-VRDNFLFFTDTHVSAEPSAMEIADSTILASQA 636 (779)
Q Consensus 558 MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~il~-~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ 636 (779)
T Consensus 13 ~l~~g~~d~~vRGsl~as~---~l~~Lk~~~g~---~~r~---slL~~~~g~~f~lapvgIde~~~~~~K~~Ii~~a~~~ 83 (202)
T TIGR03270 13 DLVNGRLDAAVRGSLSSSN---TIRELKKALGK---IYRA---SILETADGRIFLLAPVGIDEGWTISDKVKIIELASEF 83 (202)
T ss_pred HHHCCCCCEEEEECCCHHH---HHHHHHHHCCC---EEEE---EEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9866865668850442888---99999973273---5743---5332478978996465225786889999999999999
Q ss_pred HHHCCCCCCEEEEEECCCCC-CCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCC--CCCCCCCCCEEE
Q ss_conf 99818997299997025578-889778999999999987379959986730465329898963089--987777777788
Q gi|254780137|r 637 ICSLGMRPKVSVLFHSNSGS-HCIKSSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVP--NTSSSQDAQLLV 713 (779)
Q Consensus 637 ar~lGiePkVAlLS~SnfGs-~~~~s~~kvr~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p--~S~laG~ANVLI 713 (779)
T Consensus 84 ~r~lGiePKVAvLS~grl~d~gr~~~Id--------------~si~d~e~~~~~~~~~~~a~h~gIliE~av~~~adiii 149 (202)
T TIGR03270 84 LRRLGREPKVAVLSGGRLGDVGRSPEVD--------------RSIADGELIARLLKDGMEIEHYGILIEEALKDGSNVII 149 (202)
T ss_pred HHHCCCCCCEEEEECCCHHCCCCCCCCC--------------CHHHHHHHHHHHHCCCCHHEECCEEEEHHHCCCCCEEE
T ss_conf 9980999855988644021057675422--------------15875899998630550002432531054458789898
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 18912888999999986598687144314589879878763898899999999
Q gi|254780137|r 714 FPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREIIDMVALV 766 (779)
Q Consensus 714 fPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dIvn~aAlA 766 (779)
T Consensus 150 aPDg~sGNllfr~l~~l~~~~~~Ga~vlg~~~~~VdTSRa~s~e~y~~al~lA 202 (202)
T TIGR03270 150 APDGISGNLIFRSLALVGGGRSYGAPVLNDEGVFVDTSRSQTAEGYYNALKLA 202 (202)
T ss_pred ECCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCCCHHHHHHHHHCC
T ss_conf 15721202999999997487656730126876179767676557887777529