HHsearch alignment for GI: 254780137 and conserved domain: cd00762
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=0 Score=509.59 Aligned_cols=222 Identities=32% Similarity=0.476 Sum_probs=200.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCC--------CCCEEEEECCCEEECCCCCCCC
Q ss_conf 72189999999999999709882241178742542567899999981988--------5758999559603078733266
Q gi|254780137|r 178 QHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVR--------RENIWVYDLEGLVYEGREKKFD 249 (779)
Q Consensus 178 ~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~--------~~~i~~~D~~Gli~~~r~~~~~ 249 (779)
T Consensus 1 IqGTaaV~LAgli~Alk~~gk~l~d~riv~~GAGsAg~gia~~l~~~~~~~Gl~~~ea~~~i~lvD~~GLl~~~r~~-~~ 79 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKE-TC 79 (254)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEECCCCCEECCCCC-CC
T ss_conf 94889999999999999839987785899988329999999999998643265324332107885377732579754-58
Q ss_pred HHHHHHHHCC----CCCCHHHHCC--CCCEEEECCC-CCCCCHHHHHHCC---CCCEEEEECCCCC--CCCHHHHH-HHC
Q ss_conf 7889774508----8988888605--8837862578-8778988997218---9977999178720--09988998-518
Q gi|254780137|r 250 KWKSVYAQKS----GPKPLSETMN--NADVFLGLSV-AGALDPAILKFMA---EKPLIMVLANPNP--EAMPDEIK-KVR 316 (779)
Q Consensus 250 ~~~~~~a~~~----~~~~l~ea~~--~adv~iG~S~-~g~~t~e~v~~M~---~~PiIfaLsNP~p--Ei~p~~a~-~~~ 316 (779)
T Consensus 80 ~~~~~~~~~~~~~~~~~~L~e~v~~~kptvLIG~S~~~g~Fteevv~~Ma~~~~~PIIFaLSNPt~~aE~~peda~~~t~ 159 (254)
T cd00762 80 PNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATE 159 (254)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCC
T ss_conf 88899998647677679999999863998899958998988999999776338898899778999867799999997518
Q ss_pred CCEEECCCCCCCCC----------CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
Q ss_conf 98798058878877----------43503455665456751373002678999999999987203313667741387676
Q gi|254780137|r 317 PDAMICTGRSDFSN----------QVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESP 386 (779)
Q Consensus 317 g~aivatGrs~~pn----------Q~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~ 386 (779)
T Consensus 160 G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglG~l~~~a~~itd~M~~aAA~aLA~~v~~~~------------- 226 (254)
T cd00762 160 GRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEES------------- 226 (254)
T ss_pred CCEEEEECCCCCCEEECCEEEEECCCCEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHH-------------
T ss_conf 9789997897788158884885056413788503546688708767999999999999985288411-------------
Q ss_pred CCCCCCCCCCCCCHH-HHHHHHHHHHHHH
Q ss_conf 667522366654677-8679888899987
Q gi|254780137|r 387 VFGPNYLIPSPFDPN-LISYIAPAVAKAA 414 (779)
Q Consensus 387 ~~g~~yiiP~~fd~r-~~~~va~AVa~aA 414 (779)
T Consensus 227 -l~~~~l~P~~~~ir~vs~~VA~aVa~~A 254 (254)
T cd00762 227 -LKPGRLYPPLFDIQEVSLNIAVAVAKYA 254 (254)
T ss_pred -CCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf -7888563998636463799999999509