HHsearch alignment for GI: 254780137 and conserved domain: pfam01488
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=97.67 E-value=0.00012 Score=51.08 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=72.6
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHH----CCCCCCHHHHCCCCCEE
Q ss_conf 82241178742542567899999981988575899955960307873326678897745----08898888860588378
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQ----KSGPKPLSETMNNADVF 274 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~----~~~~~~l~ea~~~adv~ 274 (779)
T Consensus 9 ~l~~~~vlVIGaG~~~~~~~~~L~~~g~~--~i~v~nR----t~~ka---~~la~~~~~~~~~~~~~~~l~~~l~~~Div 79 (134)
T pfam01488 9 DLKGKKVLLIGAGEMARLAAKHLLSKGAK--KITIANR----TLEKA---KELAEEFGGEEVEALPLDELEELLAEADIV 79 (134)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCC--EEEEECC----CHHHH---HHHHHHCCCCCEEEEECHHHHHHHHHCCEE
T ss_conf 81489899999609999999999975998--8999547----57899---999998499725898513544136319999
Q ss_pred EECCC-C-CCCCHHHHHHCCCCCEEEEECCCC
Q ss_conf 62578-8-778988997218997799917872
Q gi|254780137|r 275 LGLSV-A-GALDPAILKFMAEKPLIMVLANPN 304 (779)
Q Consensus 275 iG~S~-~-g~~t~e~v~~M~~~PiIfaLsNP~ 304 (779)
T Consensus 80 I~aT~s~~~ii~~~~~~~~~~~~~iiDLavPr 111 (134)
T pfam01488 80 ISATSAPTPIITKEMVEEALKGLLFVDIAVPR 111 (134)
T ss_pred EEECCCCCCEECHHHHHHCCCCEEEEEECCCC
T ss_conf 99259997364899997443985999834788