HHsearch alignment for GI: 254780138 and conserved domain: TIGR00056
>TIGR00056 TIGR00056 conserved hypothetical protein; InterPro: IPR003453 This domain has no known function nor do any of the proteins that possess it. The aligned region is approximately 150 amino acids long..
Probab=100.00 E-value=0 Score=532.18 Aligned_cols=264 Identities=35% Similarity=0.540 Sum_probs=244.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999859999999999999999999999999997402678----872899999999983776999999999999999999
Q gi|254780138|r 110 LHYHIGKKIVKFINDSCSQAHILGLVISNTGEFCASSYKF----KGFLLSLIRQMYYVGVSGVPVVILISFVTGAVIAQQ 185 (373)
Q Consensus 110 ~~~~iG~~~~~~~~~~~~~~~f~G~~~~~~~~~~~~~~~~----r~~~~~~~~q~~~~G~~alpiv~l~~~~~G~v~a~q 185 (373)
T Consensus 6 ~~~~L~k~~~~~~ntfl~Af~l~g~~~F~~~~g~~~~r~~kyikqf~~~~~~~ql~~vG~~s~~i~l~t~~~iG~v~alQ 85 (275)
T TIGR00056 6 LIAKLGKEIIETGNTFLRAFLLTGLMLFQLLKGKPNIRKHKYIKQFPLSALLKQLNTVGVESLPIILVTSLFIGMVIALQ 85 (275)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 26533336789999999999999999999973787765413000121018999998888999999999999999999999
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99987542756689999999999998999999999996457899999999875001344442786899999999999999
Q gi|254780138|r 186 GAFQLSQFGAEIFSIDLMSILQLREIGVLLTAVMIAGRSGSAIVAEIGSMKINEEIDAIRTMGLDFVRILISPRIWALII 265 (373)
Q Consensus 186 ~~~~l~~fGa~~~v~~~~~~~~~RElgPlltaii~agR~gsa~aAeiG~M~v~eeidAL~~~Gi~p~~~Lv~PRv~A~~i 265 (373)
T Consensus 86 ~a~~l~~fgA~~~~g~~vals~~RELgPvltal~~AGRvgSa~TA~IG~MriTEqlDAL~~m~~~P~~~LV~PR~lA~~i 165 (275)
T TIGR00056 86 GALQLIAFGAETSIGGLVALSLLRELGPVLTALVVAGRVGSAFTAEIGLMRITEQLDALEMMAVNPVEFLVLPRVLACVI 165 (275)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999971742589999999998889999999999998788988875134566687788862458266577889999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 9999999999999999999999861139899999999861699--99999999999999999998317704559865899
Q gi|254780138|r 266 SLPLLTILANFSAIIGASIVIWKYYDIPFAVFFSRFHSTATLA--NIFTGLIKAPFMACAIGIVAMKEGFAVGVHSNSLG 343 (373)
Q Consensus 266 ~~p~L~~~~~~~~i~gg~~~~~~~~~i~~~~f~~~~~~~~~~~--d~~~~~~K~~~fg~~i~~i~c~~Gl~~~~~a~~VG 343 (373)
T Consensus 166 ~~PlLt~L~~~~gi~GG~~~~~~~~gi~~~~f~~~~~~~v~~w~~D~~~G~~Ka~fFGv~Ia~igc~~Gf~t~g~~~g~G 245 (275)
T TIGR00056 166 MLPLLTVLSLVAGILGGAFIASSLLGIGSESFWSKMQNAVEKWNYDIFAGLVKAVFFGVAIAIIGCYYGFTTKGGTEGVG 245 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 88899999999998614987887751440467887622211104421441135789999999999732654458866313
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999999999999999985089
Q gi|254780138|r 344 KKVTTCVVQSISIVIIIDSLFAIFYFAIGI 373 (373)
Q Consensus 344 ~att~aVV~si~~ii~~d~~~~~~~~~~gi 373 (373)
T Consensus 246 ~~TT~sVVts~l~I~~lDf~ls~i~f~LG~ 275 (275)
T TIGR00056 246 RSTTRSVVTSLLAILILDFVLSAIMFQLGI 275 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 789999999999999999999999985079