HHsearch alignment for GI: 254780138 and conserved domain: TIGR00056

>TIGR00056 TIGR00056 conserved hypothetical protein; InterPro: IPR003453 This domain has no known function nor do any of the proteins that possess it. The aligned region is approximately 150 amino acids long..
Probab=100.00  E-value=0  Score=532.18  Aligned_cols=264  Identities=35%  Similarity=0.540  Sum_probs=244.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999859999999999999999999999999997402678----872899999999983776999999999999999999
Q gi|254780138|r  110 LHYHIGKKIVKFINDSCSQAHILGLVISNTGEFCASSYKF----KGFLLSLIRQMYYVGVSGVPVVILISFVTGAVIAQQ  185 (373)
Q Consensus       110 ~~~~iG~~~~~~~~~~~~~~~f~G~~~~~~~~~~~~~~~~----r~~~~~~~~q~~~~G~~alpiv~l~~~~~G~v~a~q  185 (373)
T Consensus         6 ~~~~L~k~~~~~~ntfl~Af~l~g~~~F~~~~g~~~~r~~kyikqf~~~~~~~ql~~vG~~s~~i~l~t~~~iG~v~alQ   85 (275)
T TIGR00056         6 LIAKLGKEIIETGNTFLRAFLLTGLMLFQLLKGKPNIRKHKYIKQFPLSALLKQLNTVGVESLPIILVTSLFIGMVIALQ   85 (275)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             26533336789999999999999999999973787765413000121018999998888999999999999999999999


Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             99987542756689999999999998999999999996457899999999875001344442786899999999999999
Q gi|254780138|r  186 GAFQLSQFGAEIFSIDLMSILQLREIGVLLTAVMIAGRSGSAIVAEIGSMKINEEIDAIRTMGLDFVRILISPRIWALII  265 (373)
Q Consensus       186 ~~~~l~~fGa~~~v~~~~~~~~~RElgPlltaii~agR~gsa~aAeiG~M~v~eeidAL~~~Gi~p~~~Lv~PRv~A~~i  265 (373)
T Consensus        86 ~a~~l~~fgA~~~~g~~vals~~RELgPvltal~~AGRvgSa~TA~IG~MriTEqlDAL~~m~~~P~~~LV~PR~lA~~i  165 (275)
T TIGR00056        86 GALQLIAFGAETSIGGLVALSLLRELGPVLTALVVAGRVGSAFTAEIGLMRITEQLDALEMMAVNPVEFLVLPRVLACVI  165 (275)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             99999971742589999999998889999999999998788988875134566687788862458266577889999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf             9999999999999999999999861139899999999861699--99999999999999999998317704559865899
Q gi|254780138|r  266 SLPLLTILANFSAIIGASIVIWKYYDIPFAVFFSRFHSTATLA--NIFTGLIKAPFMACAIGIVAMKEGFAVGVHSNSLG  343 (373)
Q Consensus       266 ~~p~L~~~~~~~~i~gg~~~~~~~~~i~~~~f~~~~~~~~~~~--d~~~~~~K~~~fg~~i~~i~c~~Gl~~~~~a~~VG  343 (373)
T Consensus       166 ~~PlLt~L~~~~gi~GG~~~~~~~~gi~~~~f~~~~~~~v~~w~~D~~~G~~Ka~fFGv~Ia~igc~~Gf~t~g~~~g~G  245 (275)
T TIGR00056       166 MLPLLTVLSLVAGILGGAFIASSLLGIGSESFWSKMQNAVEKWNYDIFAGLVKAVFFGVAIAIIGCYYGFTTKGGTEGVG  245 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf             88899999999998614987887751440467887622211104421441135789999999999732654458866313


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999999999999999999999985089
Q gi|254780138|r  344 KKVTTCVVQSISIVIIIDSLFAIFYFAIGI  373 (373)
Q Consensus       344 ~att~aVV~si~~ii~~d~~~~~~~~~~gi  373 (373)
T Consensus       246 ~~TT~sVVts~l~I~~lDf~ls~i~f~LG~  275 (275)
T TIGR00056       246 RSTTRSVVTSLLAILILDFVLSAIMFQLGI  275 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             789999999999999999999999985079