HHsearch alignment of GI: 254780138 and MMDB domain: 2ka5_A_
>2ka5_A (A:) Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=97.87 E-value=5.4e-05 Score=53.20 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=71.8
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH
Q ss_conf 5882799984035635522007999986431167880899701051521299999999997---5187643158991269
Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE 79 (373)
Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~ 79 (373)
+++.+++++.|+|+..+...+.+++.+.+... ..+.+++|+++++.+|++|...|.++.+ +.+.+..+.+.++...
T Consensus 19 ~~~~~ii~l~G~L~~~~~~~~~~~l~~~~~~~-~~~~iiiDl~~v~~iDssg~~~l~~~~~~~~~~g~~l~l~~~~~~v~ 97 (125)
T 2ka5_A 19 VDDVVILMPNKELNIENAHLFKKWVFDEFLNK-GYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNEKVE 97 (125)
T ss_dssp CSSCEEECCCSCCSGGGTHHHHHHHHHHTTTT-TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 99999999750897888999999999999966-99889998469984057899899999999997699399988978999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999886422
Q gi|254780138|r 80 QLFSLISFTH 89 (373)
Q Consensus 80 ~Ll~Ll~~~~ 89 (373)
++++......
T Consensus 98 ~~l~~~~~~~ 107 (125)
T 2ka5_A 98 RVLSLTNLDR 107 (125)
T ss_dssp HHHHHTTSTT
T ss_pred HHHHHCCCCC
T ss_conf 9999859986