Query         gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 373
No_of_seqs    186 out of 1048
Neff          6.2 
Searched_HMMs 33803
Date          Sun May 22 11:00:41 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780138.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1sbo_A Putative anti-sigma fa  98.3 7.7E-06 2.3E-10   59.2   9.0   87    3-90     11-100 (110)
  2 >1th8_B Anti-sigma F factor an  98.1 1.7E-05 5.1E-10   56.7   8.3   88    3-91     10-100 (116)
  3 >1h4x_A SPOIIAA, anti-sigma F   97.9 5.1E-05 1.5E-09   53.4   8.2   87    3-90      9-98  (117)
  4 >2ka5_A Putative anti-sigma fa  97.9 5.4E-05 1.6E-09   53.2   7.1   86    3-89     19-107 (125)
  5 >2vy9_A Anti-sigma-factor anta  97.8 9.6E-05 2.9E-09   51.4   8.0   85    3-88     10-97  (123)
  6 >3ih8_A Salt-tolerant glutamin  96.1 0.00049 1.4E-08   46.5  -1.8   76    4-83     66-144 (147)
  7 >2q3l_A Uncharacterized protei  77.4     4.1 0.00012   18.9   5.7   86    3-88     18-107 (126)
  8 >2ook_A Hypothetical protein;   57.8      10  0.0003   16.2   4.0   53    3-55     18-71  (127)
  9 >1sq5_A Pantothenate kinase; P  32.9      13 0.00037   15.5   0.4   12   52-63     94-105 (245)
 10 >2ixm_A Serine/threonine-prote  22.2      36  0.0011   12.3   3.6   79   72-150     3-85  (143)
 11 >1z96_A DNA-damage, UBA-domain  20.1      40  0.0012   12.0   1.6   18  237-254     4-21  (40)

No 1  
>>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} (A:)
Probab=98.26  E-value=7.7e-06  Score=59.15  Aligned_cols=87  Identities=15%  Similarity=0.313  Sum_probs=73.2

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH
Q ss_conf             5882799984035635522007999986431167880899701051521299999999997---5187643158991269
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE   79 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~   79 (373)
                      .++..++++.|+++..+...+.+.+.+.+... +.+.+++|+++++++|++|+..|.++.+   ..+.+....+.+++.+
T Consensus        11 ~~~~~vi~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~viiD~s~v~~iDs~g~~~l~~~~~~~~~~g~~l~l~~~~~~v~   89 (110)
T 1sbo_A           11 QDDKAIVRVQGDIDAYNSSELKEQLRNFISTT-SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESIS   89 (110)
T ss_dssp             CSSEEEEEEESCBSTTTTTHHHHHHHTHHHHC-SCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHHHH
T ss_pred             ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             99999999999998689899999999998469-99789999757977772599999999999997899899980998999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99998864222
Q gi|254780138|r   80 QLFSLISFTHR   90 (373)
Q Consensus        80 ~Ll~Ll~~~~~   90 (373)
                      +.++.......
T Consensus        90 ~~l~~~g~~~~  100 (110)
T 1sbo_A           90 RILKLTHLDKI  100 (110)
T ss_dssp             HHHHHTTCGGG
T ss_pred             HHHHHCCCCCE
T ss_conf             99998299866


No 2  
>>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} (B:)
Probab=98.11  E-value=1.7e-05  Score=56.68  Aligned_cols=88  Identities=16%  Similarity=0.320  Sum_probs=73.8

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH
Q ss_conf             5882799984035635522007999986431167880899701051521299999999997---5187643158991269
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE   79 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~   79 (373)
                      +++..+++++|+++..+...+.+.+.+.+... +.+.+++|+++++.+|++|...|.++.+   +.+.+..+.++++..+
T Consensus        10 ~~~~~vi~~~g~L~~~~~~~~~~~l~~~~~~~-~~~~vilDls~v~~iDssg~~~L~~~~~~~~~~g~~l~l~~~~~~v~   88 (116)
T 1th8_B           10 KQDVLIVRLSGELDHHTAEELREQVTDVLENR-AIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPAVK   88 (116)
T ss_dssp             ETTEEEEEEEEEESHHHHHHHHHHHHHHHHSS-CCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCCHHHH
T ss_pred             ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             89999999999998799999999999999608-99689999779862387999999999999996899899997899999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999988642220
Q gi|254780138|r   80 QLFSLISFTHRK   91 (373)
Q Consensus        80 ~Ll~Ll~~~~~~   91 (373)
                      +.++.......-
T Consensus        89 ~~l~~~~~~~~~  100 (116)
T 1th8_B           89 RLFDMSGLFKII  100 (116)
T ss_dssp             HHHHHHTGGGTS
T ss_pred             HHHHHCCCCCEE
T ss_conf             999980999704


No 3  
>>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} (A:)
Probab=97.95  E-value=5.1e-05  Score=53.36  Aligned_cols=87  Identities=17%  Similarity=0.278  Sum_probs=72.1

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH
Q ss_conf             5882799984035635522007999986431167880899701051521299999999997---5187643158991269
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE   79 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~   79 (373)
                      +++..+++++|+++..+.....+.+.+.+... ..+.+++|++++.++|++|...|.++.+   +.+.+....+.+|..+
T Consensus         9 ~~~v~vi~i~G~L~~~~~~~~~~~l~~~~~~~-~~~~vilD~s~v~~iDssg~~~L~~~~~~~~~~g~~v~l~~~~~~~~   87 (117)
T 1h4x_A            9 TRETVVIRLFGELDHHAVEQIRAKISTAIFQG-AVTTIIWNFERLSFMDXSGVGLVLGRMRELEAVAGRTILLNPSPTMR   87 (117)
T ss_dssp             ETTEEEEEEEEEECHHHHHHHHHHHHHHHHHT-SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESCCHHHH
T ss_pred             CCCEEEEEEEEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             09899999988998789899999999999649-99789999769885187999999999999996799899993998999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99998864222
Q gi|254780138|r   80 QLFSLISFTHR   90 (373)
Q Consensus        80 ~Ll~Ll~~~~~   90 (373)
                      +.++.......
T Consensus        88 ~~l~~~~~~~~   98 (117)
T 1h4x_A           88 KVFQFSGLGPW   98 (117)
T ss_dssp             HHHHHTTCGGG
T ss_pred             HHHHHCCCCEE
T ss_conf             99998199867


No 4  
>>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A* (A:)
Probab=97.87  E-value=5.4e-05  Score=53.20  Aligned_cols=86  Identities=13%  Similarity=0.178  Sum_probs=71.8

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH
Q ss_conf             5882799984035635522007999986431167880899701051521299999999997---5187643158991269
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE   79 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~   79 (373)
                      +++.+++++.|+|+..+...+.+++.+.+... ..+.+++|+++++.+|++|...|.++.+   +.+.+..+.+.++...
T Consensus        19 ~~~~~ii~l~G~L~~~~~~~~~~~l~~~~~~~-~~~~iiiDl~~v~~iDssg~~~l~~~~~~~~~~g~~l~l~~~~~~v~   97 (125)
T 2ka5_A           19 VDDVVILMPNKELNIENAHLFKKWVFDEFLNK-GYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNEKVE   97 (125)
T ss_dssp             CSSCEEECCCSCCSGGGTHHHHHHHHHHTTTT-TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred             ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf             99999999750897888999999999999966-99889998469984057899899999999997699399988978999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999886422
Q gi|254780138|r   80 QLFSLISFTH   89 (373)
Q Consensus        80 ~Ll~Ll~~~~   89 (373)
                      ++++......
T Consensus        98 ~~l~~~~~~~  107 (125)
T 2ka5_A           98 RVLSLTNLDR  107 (125)
T ss_dssp             HHHHHTTSTT
T ss_pred             HHHHHCCCCC
T ss_conf             9999859986


No 5  
>>2vy9_A Anti-sigma-factor antagonist; gene regulation, RSBS, stressosome, STAS domain, bacillus subtilis; 2.3A {Moorella thermoacetica} (A:)
Probab=97.83  E-value=9.6e-05  Score=51.43  Aligned_cols=85  Identities=9%  Similarity=0.205  Sum_probs=71.1

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH
Q ss_conf             5882799984035635522007999986431167880899701051521299999999997---5187643158991269
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE   79 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~   79 (373)
                      .++.+++++.|+++..+...+.+.+.+.+... ..+.+++|+++++.+|++|+..|.++.+   +.+.+..+.+.++..+
T Consensus        10 ~~~~~ii~~~g~l~~~~~~~~~~~l~~~~~~~-~~~~vilD~s~v~~iDss~~~~L~~l~~~~~~~g~~l~l~~~~~~v~   88 (123)
T 2vy9_A           10 VDDYWVVAIEETLHDQSVIQFKEELLHNITGV-AGKGLVIDISALEVVDSFVTRVLIEISRLAELLGLPFVLTGIKPAVA   88 (123)
T ss_dssp             ETTEEEEECCCCSCSHHHHHHHHHHHHHHTTS-CCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHTTCCEEEECCCHHHH
T ss_pred             ECCEEEEEEEEEECHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             89999999678987899999999998753157-98699997557875598999999999999973598599994898999


Q ss_pred             HHHHHHHHH
Q ss_conf             999988642
Q gi|254780138|r   80 QLFSLISFT   88 (373)
Q Consensus        80 ~Ll~Ll~~~   88 (373)
                      +.++.....
T Consensus        89 ~~l~~~gl~   97 (123)
T 2vy9_A           89 ITLTEXGLD   97 (123)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHCCC
T ss_conf             999995898


No 6  
>>3ih8_A Salt-tolerant glutaminase; hydrolase; 2.30A {Micrococcus luteus} PDB: 3if5_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A (A:310-456)
Probab=96.09  E-value=0.00049  Score=46.48  Aligned_cols=76  Identities=12%  Similarity=0.137  Sum_probs=57.7

Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC---CCCCCCCCCCHHHHH
Q ss_conf             88279998403563552200799998643116788089970105152129999999999751---876431589912699
Q gi|254780138|r    4 NGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFMEKY---HGKIKLQGVSTHIEQ   80 (373)
Q Consensus         4 dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~~~---~~~~~~~~l~~~~~~   80 (373)
                      ++..+++++|+....+.....++    +.+.++.+.+++|+++++.+|++++..|.++.+++   +.+..+.+.++...+
T Consensus        66 ~~v~v~~~~g~L~F~na~~~~~~----l~~~~~~~~vVlD~~~v~~iD~sa~~~L~~l~~~l~~~g~~v~l~~~~~~v~~  141 (147)
T 3ih8_A           66 DRAALSAATGGGAVHEAAAAAAR----DENDGPIRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPERILPL  141 (147)
T ss_dssp             ---HHHHHHTCTTTTHHHHC-----------CCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHTTTCEEEEECCC-----
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHCCCC
T ss_conf             12111002334432222111234----55555541699984202222489999999999998747967999890204788


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780138|r   81 LFS   83 (373)
Q Consensus        81 Ll~   83 (373)
                      .++
T Consensus       142 ~L~  144 (147)
T 3ih8_A          142 EEA  144 (147)
T ss_dssp             ---
T ss_pred             CCC
T ss_conf             888


No 7  
>>2q3l_A Uncharacterized protein; YP_001095227.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} (A:)
Probab=77.38  E-value=4.1  Score=18.95  Aligned_cols=86  Identities=10%  Similarity=0.099  Sum_probs=57.7

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCHHHHHHHHHHHHHHHHHCCC---CCCCCCCCHHH
Q ss_conf             588279998403563552200799998643116788-08997010515212999999999975187---64315899126
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSD-SAIVDLSAITEIDTIGAELIMYFMEKYHG---KIKLQGVSTHI   78 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~-~i~iDls~i~~lDTAGA~lL~~l~~~~~~---~~~~~~l~~~~   78 (373)
                      +++...++++|..|...+..+.+.+.+.++.+.+.+ .+.+|..+...||-..+|-=.++..++..   ++..++-+.=.
T Consensus        18 ~~~vi~v~~~G~lt~~D~~~l~~~l~~~l~~~~~~~v~ll~~~~~f~g~~~~A~~ed~k~~~~h~~~f~RiAiV~d~~W~   97 (126)
T 2q3l_A           18 DDFYLAFKAVGKLTHEDYEQXTPLLESALAGIKTPEIVALIDITELDGLSLHAAWDDLKLGLKHGKEFKRVAIIGQGELQ   97 (126)
T ss_dssp             TEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCCSSCEEEEEEEEEEEEECHHHHHHHHHHHHHHGGGEEEEEEECCSHHH
T ss_pred             CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHH
T ss_conf             97389999987787999999999999999756796399999827779997778889888787645111389999685999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999988642
Q gi|254780138|r   79 EQLFSLISFT   88 (373)
Q Consensus        79 ~~Ll~Ll~~~   88 (373)
                      +.........
T Consensus        98 ~~~~~~~~~~  107 (126)
T 2q3l_A           98 EWATRVANWF  107 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHCC
T ss_conf             9999997306


No 8  
>>2ook_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina ncimb 400} (A:)
Probab=57.75  E-value=10  Score=16.21  Aligned_cols=53  Identities=15%  Similarity=0.120  Sum_probs=41.4

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCHHHHHHHH
Q ss_conf             588279998403563552200799998643116788-08997010515212999
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSD-SAIVDLSAITEIDTIGA   55 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~-~i~iDls~i~~lDTAGA   55 (373)
                      +++...++++|..|...+..+.+.+...++.+.+.+ .+.+|..+.+.||-..+
T Consensus        18 ~~~vi~i~v~G~lt~~D~~~l~~~i~~~l~~~~~~~v~ll~~~~~F~G~~~~A~   71 (127)
T 2ook_A           18 SVFFVTLKAIGTLTHEDYLVITPXLEGALSQVDQPKVSLFLDATELDGWDLRAA   71 (127)
T ss_dssp             TEEEEEEEEEEEECHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEECTTCG
T ss_pred             CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHH
T ss_conf             996899999977879999999999999998669954999998077799987789


No 9  
>>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} (A:1-121,A:185-308)
Probab=32.86  E-value=13  Score=15.52  Aligned_cols=12  Identities=8%  Similarity=0.252  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             299999999997
Q gi|254780138|r   52 TIGAELIMYFME   63 (373)
Q Consensus        52 TAGA~lL~~l~~   63 (373)
                      |.-|..|..++.
T Consensus        94 STtar~L~~ll~  105 (245)
T 1sq5_A           94 STTARVLQALLS  105 (245)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHH
T ss_conf             789999999973


No 10 
>>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2 PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens} (A:47-189)
Probab=22.23  E-value=36  Score=12.30  Aligned_cols=79  Identities=14%  Similarity=0.116  Sum_probs=50.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCC
Q ss_conf             58991269999988642220112456533543--113665899985999999999999--99999999999999974026
Q gi|254780138|r   72 QGVSTHIEQLFSLISFTHRKKIKNQKPQRSFF--YNSFKNLHYHIGKKIVKFINDSCS--QAHILGLVISNTGEFCASSY  147 (373)
Q Consensus        72 ~~l~~~~~~Ll~Ll~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iG~~~~~~~~~~~~--~~~f~G~~~~~~~~~~~~~~  147 (373)
                      ...++..++++++++...+-..+.||.+.+.+  -+.++.|..++-+.+.++..+...  .-..+-|....+.+.+.++.
T Consensus         3 ~~~s~~i~~l~~iL~~l~~~i~e~PP~~~~~RFGN~afR~w~~~l~~~~~~l~~~~l~~~~~~~~~EL~~Yl~~SFGn~t   82 (143)
T 2ixm_A            3 YRVSEAIEKLLALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKESVGNST   82 (143)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHTSCCCCCSCSSSCTHHHHHHHHHHHHHHHHHHTTSCGGGGGGHHHHHHHHHTSSCBTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             87788999999999999999974899988877686799999999999899999997592035578999998875769870


Q ss_pred             CCC
Q ss_conf             788
Q gi|254780138|r  148 KFK  150 (373)
Q Consensus       148 ~~r  150 (373)
                      |.-
T Consensus        83 RiD   85 (143)
T 2ixm_A           83 RID   85 (143)
T ss_dssp             TTE
T ss_pred             CCC
T ss_conf             252


No 11 
>>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} (A:)
Probab=20.11  E-value=40  Score=12.01  Aligned_cols=18  Identities=28%  Similarity=0.538  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHCCCHHHH
Q ss_conf             750013444427868999
Q gi|254780138|r  237 INEEIDAIRTMGLDFVRI  254 (373)
Q Consensus       237 v~eeidAL~~~Gi~p~~~  254 (373)
                      .|..|.-|-.||.||.+-
T Consensus         4 lnskiaqlvsmgfdplea   21 (40)
T 1z96_A            4 LNSKIAQLVSMGFDPLEA   21 (40)
T ss_dssp             HHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHCCCCHHHH
T ss_conf             647999999817887899


Done!