Query gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Match_columns 373 No_of_seqs 186 out of 1048 Neff 6.2 Searched_HMMs 33803 Date Sun May 22 11:00:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780138.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1sbo_A Putative anti-sigma fa 98.3 7.7E-06 2.3E-10 59.2 9.0 87 3-90 11-100 (110) 2 >1th8_B Anti-sigma F factor an 98.1 1.7E-05 5.1E-10 56.7 8.3 88 3-91 10-100 (116) 3 >1h4x_A SPOIIAA, anti-sigma F 97.9 5.1E-05 1.5E-09 53.4 8.2 87 3-90 9-98 (117) 4 >2ka5_A Putative anti-sigma fa 97.9 5.4E-05 1.6E-09 53.2 7.1 86 3-89 19-107 (125) 5 >2vy9_A Anti-sigma-factor anta 97.8 9.6E-05 2.9E-09 51.4 8.0 85 3-88 10-97 (123) 6 >3ih8_A Salt-tolerant glutamin 96.1 0.00049 1.4E-08 46.5 -1.8 76 4-83 66-144 (147) 7 >2q3l_A Uncharacterized protei 77.4 4.1 0.00012 18.9 5.7 86 3-88 18-107 (126) 8 >2ook_A Hypothetical protein; 57.8 10 0.0003 16.2 4.0 53 3-55 18-71 (127) 9 >1sq5_A Pantothenate kinase; P 32.9 13 0.00037 15.5 0.4 12 52-63 94-105 (245) 10 >2ixm_A Serine/threonine-prote 22.2 36 0.0011 12.3 3.6 79 72-150 3-85 (143) 11 >1z96_A DNA-damage, UBA-domain 20.1 40 0.0012 12.0 1.6 18 237-254 4-21 (40) No 1 >>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} (A:) Probab=98.26 E-value=7.7e-06 Score=59.15 Aligned_cols=87 Identities=15% Similarity=0.313 Sum_probs=73.2 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH Q ss_conf 5882799984035635522007999986431167880899701051521299999999997---5187643158991269 Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE 79 (373) Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~ 79 (373) .++..++++.|+++..+...+.+.+.+.+... +.+.+++|+++++++|++|+..|.++.+ ..+.+....+.+++.+ T Consensus 11 ~~~~~vi~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~viiD~s~v~~iDs~g~~~l~~~~~~~~~~g~~l~l~~~~~~v~ 89 (110) T 1sbo_A 11 QDDKAIVRVQGDIDAYNSSELKEQLRNFISTT-SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESIS 89 (110) T ss_dssp CSSEEEEEEESCBSTTTTTHHHHHHHTHHHHC-SCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHHHH T ss_pred ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH T ss_conf 99999999999998689899999999998469-99789999757977772599999999999997899899980998999 Q ss_pred HHHHHHHHHHH Q ss_conf 99998864222 Q gi|254780138|r 80 QLFSLISFTHR 90 (373) Q Consensus 80 ~Ll~Ll~~~~~ 90 (373) +.++....... T Consensus 90 ~~l~~~g~~~~ 100 (110) T 1sbo_A 90 RILKLTHLDKI 100 (110) T ss_dssp HHHHHTTCGGG T ss_pred HHHHHCCCCCE T ss_conf 99998299866 No 2 >>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} (B:) Probab=98.11 E-value=1.7e-05 Score=56.68 Aligned_cols=88 Identities=16% Similarity=0.320 Sum_probs=73.8 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH Q ss_conf 5882799984035635522007999986431167880899701051521299999999997---5187643158991269 Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE 79 (373) Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~ 79 (373) +++..+++++|+++..+...+.+.+.+.+... +.+.+++|+++++.+|++|...|.++.+ +.+.+..+.++++..+ T Consensus 10 ~~~~~vi~~~g~L~~~~~~~~~~~l~~~~~~~-~~~~vilDls~v~~iDssg~~~L~~~~~~~~~~g~~l~l~~~~~~v~ 88 (116) T 1th8_B 10 KQDVLIVRLSGELDHHTAEELREQVTDVLENR-AIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPAVK 88 (116) T ss_dssp ETTEEEEEEEEEESHHHHHHHHHHHHHHHHSS-CCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCCHHHH T ss_pred ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH T ss_conf 89999999999998799999999999999608-99689999779862387999999999999996899899997899999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999988642220 Q gi|254780138|r 80 QLFSLISFTHRK 91 (373) Q Consensus 80 ~Ll~Ll~~~~~~ 91 (373) +.++.......- T Consensus 89 ~~l~~~~~~~~~ 100 (116) T 1th8_B 89 RLFDMSGLFKII 100 (116) T ss_dssp HHHHHHTGGGTS T ss_pred HHHHHCCCCCEE T ss_conf 999980999704 No 3 >>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} (A:) Probab=97.95 E-value=5.1e-05 Score=53.36 Aligned_cols=87 Identities=17% Similarity=0.278 Sum_probs=72.1 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH Q ss_conf 5882799984035635522007999986431167880899701051521299999999997---5187643158991269 Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE 79 (373) Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~ 79 (373) +++..+++++|+++..+.....+.+.+.+... ..+.+++|++++.++|++|...|.++.+ +.+.+....+.+|..+ T Consensus 9 ~~~v~vi~i~G~L~~~~~~~~~~~l~~~~~~~-~~~~vilD~s~v~~iDssg~~~L~~~~~~~~~~g~~v~l~~~~~~~~ 87 (117) T 1h4x_A 9 TRETVVIRLFGELDHHAVEQIRAKISTAIFQG-AVTTIIWNFERLSFMDXSGVGLVLGRMRELEAVAGRTILLNPSPTMR 87 (117) T ss_dssp ETTEEEEEEEEEECHHHHHHHHHHHHHHHHHT-SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESCCHHHH T ss_pred CCCEEEEEEEEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH T ss_conf 09899999988998789899999999999649-99789999769885187999999999999996799899993998999 Q ss_pred HHHHHHHHHHH Q ss_conf 99998864222 Q gi|254780138|r 80 QLFSLISFTHR 90 (373) Q Consensus 80 ~Ll~Ll~~~~~ 90 (373) +.++....... T Consensus 88 ~~l~~~~~~~~ 98 (117) T 1h4x_A 88 KVFQFSGLGPW 98 (117) T ss_dssp HHHHHTTCGGG T ss_pred HHHHHCCCCEE T ss_conf 99998199867 No 4 >>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A* (A:) Probab=97.87 E-value=5.4e-05 Score=53.20 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=71.8 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH Q ss_conf 5882799984035635522007999986431167880899701051521299999999997---5187643158991269 Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE 79 (373) Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~ 79 (373) +++.+++++.|+|+..+...+.+++.+.+... ..+.+++|+++++.+|++|...|.++.+ +.+.+..+.+.++... T Consensus 19 ~~~~~ii~l~G~L~~~~~~~~~~~l~~~~~~~-~~~~iiiDl~~v~~iDssg~~~l~~~~~~~~~~g~~l~l~~~~~~v~ 97 (125) T 2ka5_A 19 VDDVVILMPNKELNIENAHLFKKWVFDEFLNK-GYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNEKVE 97 (125) T ss_dssp CSSCEEECCCSCCSGGGTHHHHHHHHHHTTTT-TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH T ss_pred ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH T ss_conf 99999999750897888999999999999966-99889998469984057899899999999997699399988978999 Q ss_pred HHHHHHHHHH Q ss_conf 9999886422 Q gi|254780138|r 80 QLFSLISFTH 89 (373) Q Consensus 80 ~Ll~Ll~~~~ 89 (373) ++++...... T Consensus 98 ~~l~~~~~~~ 107 (125) T 2ka5_A 98 RVLSLTNLDR 107 (125) T ss_dssp HHHHHTTSTT T ss_pred HHHHHCCCCC T ss_conf 9999859986 No 5 >>2vy9_A Anti-sigma-factor antagonist; gene regulation, RSBS, stressosome, STAS domain, bacillus subtilis; 2.3A {Moorella thermoacetica} (A:) Probab=97.83 E-value=9.6e-05 Score=51.43 Aligned_cols=85 Identities=9% Similarity=0.205 Sum_probs=71.1 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH Q ss_conf 5882799984035635522007999986431167880899701051521299999999997---5187643158991269 Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE 79 (373) Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~ 79 (373) .++.+++++.|+++..+...+.+.+.+.+... ..+.+++|+++++.+|++|+..|.++.+ +.+.+..+.+.++..+ T Consensus 10 ~~~~~ii~~~g~l~~~~~~~~~~~l~~~~~~~-~~~~vilD~s~v~~iDss~~~~L~~l~~~~~~~g~~l~l~~~~~~v~ 88 (123) T 2vy9_A 10 VDDYWVVAIEETLHDQSVIQFKEELLHNITGV-AGKGLVIDISALEVVDSFVTRVLIEISRLAELLGLPFVLTGIKPAVA 88 (123) T ss_dssp ETTEEEEECCCCSCSHHHHHHHHHHHHHHTTS-CCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHTTCCEEEECCCHHHH T ss_pred ECCEEEEEEEEEECHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH T ss_conf 89999999678987899999999998753157-98699997557875598999999999999973598599994898999 Q ss_pred HHHHHHHHH Q ss_conf 999988642 Q gi|254780138|r 80 QLFSLISFT 88 (373) Q Consensus 80 ~Ll~Ll~~~ 88 (373) +.++..... T Consensus 89 ~~l~~~gl~ 97 (123) T 2vy9_A 89 ITLTEXGLD 97 (123) T ss_dssp HHHHHTTCC T ss_pred HHHHHHCCC T ss_conf 999995898 No 6 >>3ih8_A Salt-tolerant glutaminase; hydrolase; 2.30A {Micrococcus luteus} PDB: 3if5_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A (A:310-456) Probab=96.09 E-value=0.00049 Score=46.48 Aligned_cols=76 Identities=12% Similarity=0.137 Sum_probs=57.7 Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC---CCCCCCCCCCHHHHH Q ss_conf 88279998403563552200799998643116788089970105152129999999999751---876431589912699 Q gi|254780138|r 4 NGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFMEKY---HGKIKLQGVSTHIEQ 80 (373) Q Consensus 4 dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~~~---~~~~~~~~l~~~~~~ 80 (373) ++..+++++|+....+.....++ +.+.++.+.+++|+++++.+|++++..|.++.+++ +.+..+.+.++...+ T Consensus 66 ~~v~v~~~~g~L~F~na~~~~~~----l~~~~~~~~vVlD~~~v~~iD~sa~~~L~~l~~~l~~~g~~v~l~~~~~~v~~ 141 (147) T 3ih8_A 66 DRAALSAATGGGAVHEAAAAAAR----DENDGPIRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPERILPL 141 (147) T ss_dssp ---HHHHHHTCTTTTHHHHC-----------CCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHTTTCEEEEECCC----- T ss_pred HHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHCCCC T ss_conf 12111002334432222111234----55555541699984202222489999999999998747967999890204788 Q ss_pred HHH Q ss_conf 999 Q gi|254780138|r 81 LFS 83 (373) Q Consensus 81 Ll~ 83 (373) .++ T Consensus 142 ~L~ 144 (147) T 3ih8_A 142 EEA 144 (147) T ss_dssp --- T ss_pred CCC T ss_conf 888 No 7 >>2q3l_A Uncharacterized protein; YP_001095227.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} (A:) Probab=77.38 E-value=4.1 Score=18.95 Aligned_cols=86 Identities=10% Similarity=0.099 Sum_probs=57.7 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCHHHHHHHHHHHHHHHHHCCC---CCCCCCCCHHH Q ss_conf 588279998403563552200799998643116788-08997010515212999999999975187---64315899126 Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSD-SAIVDLSAITEIDTIGAELIMYFMEKYHG---KIKLQGVSTHI 78 (373) Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~-~i~iDls~i~~lDTAGA~lL~~l~~~~~~---~~~~~~l~~~~ 78 (373) +++...++++|..|...+..+.+.+.+.++.+.+.+ .+.+|..+...||-..+|-=.++..++.. ++..++-+.=. T Consensus 18 ~~~vi~v~~~G~lt~~D~~~l~~~l~~~l~~~~~~~v~ll~~~~~f~g~~~~A~~ed~k~~~~h~~~f~RiAiV~d~~W~ 97 (126) T 2q3l_A 18 DDFYLAFKAVGKLTHEDYEQXTPLLESALAGIKTPEIVALIDITELDGLSLHAAWDDLKLGLKHGKEFKRVAIIGQGELQ 97 (126) T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCCSSCEEEEEEEEEEEEECHHHHHHHHHHHHHHGGGEEEEEEECCSHHH T ss_pred CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHH T ss_conf 97389999987787999999999999999756796399999827779997778889888787645111389999685999 Q ss_pred HHHHHHHHHH Q ss_conf 9999988642 Q gi|254780138|r 79 EQLFSLISFT 88 (373) Q Consensus 79 ~~Ll~Ll~~~ 88 (373) +......... T Consensus 98 ~~~~~~~~~~ 107 (126) T 2q3l_A 98 EWATRVANWF 107 (126) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHCC T ss_conf 9999997306 No 8 >>2ook_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina ncimb 400} (A:) Probab=57.75 E-value=10 Score=16.21 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=41.4 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCHHHHHHHH Q ss_conf 588279998403563552200799998643116788-08997010515212999 Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSD-SAIVDLSAITEIDTIGA 55 (373) Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~-~i~iDls~i~~lDTAGA 55 (373) +++...++++|..|...+..+.+.+...++.+.+.+ .+.+|..+.+.||-..+ T Consensus 18 ~~~vi~i~v~G~lt~~D~~~l~~~i~~~l~~~~~~~v~ll~~~~~F~G~~~~A~ 71 (127) T 2ook_A 18 SVFFVTLKAIGTLTHEDYLVITPXLEGALSQVDQPKVSLFLDATELDGWDLRAA 71 (127) T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEECTTCG T ss_pred CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHH T ss_conf 996899999977879999999999999998669954999998077799987789 No 9 >>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} (A:1-121,A:185-308) Probab=32.86 E-value=13 Score=15.52 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=4.6 Q ss_pred HHHHHHHHHHHH Q ss_conf 299999999997 Q gi|254780138|r 52 TIGAELIMYFME 63 (373) Q Consensus 52 TAGA~lL~~l~~ 63 (373) |.-|..|..++. T Consensus 94 STtar~L~~ll~ 105 (245) T 1sq5_A 94 STTARVLQALLS 105 (245) T ss_dssp HHHHHHHHHHHT T ss_pred CHHHHHHHHHHH T ss_conf 789999999973 No 10 >>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2 PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens} (A:47-189) Probab=22.23 E-value=36 Score=12.30 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=50.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCC Q ss_conf 58991269999988642220112456533543--113665899985999999999999--99999999999999974026 Q gi|254780138|r 72 QGVSTHIEQLFSLISFTHRKKIKNQKPQRSFF--YNSFKNLHYHIGKKIVKFINDSCS--QAHILGLVISNTGEFCASSY 147 (373) Q Consensus 72 ~~l~~~~~~Ll~Ll~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iG~~~~~~~~~~~~--~~~f~G~~~~~~~~~~~~~~ 147 (373) ...++..++++++++...+-..+.||.+.+.+ -+.++.|..++-+.+.++..+... .-..+-|....+.+.+.++. T Consensus 3 ~~~s~~i~~l~~iL~~l~~~i~e~PP~~~~~RFGN~afR~w~~~l~~~~~~l~~~~l~~~~~~~~~EL~~Yl~~SFGn~t 82 (143) T 2ixm_A 3 YRVSEAIEKLLALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKESVGNST 82 (143) T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTSCCCCCSCSSSCTHHHHHHHHHHHHHHHHHHTTSCGGGGGGHHHHHHHHHTSSCBTT T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf 87788999999999999999974899988877686799999999999899999997592035578999998875769870 Q ss_pred CCC Q ss_conf 788 Q gi|254780138|r 148 KFK 150 (373) Q Consensus 148 ~~r 150 (373) |.- T Consensus 83 RiD 85 (143) T 2ixm_A 83 RID 85 (143) T ss_dssp TTE T ss_pred CCC T ss_conf 252 No 11 >>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} (A:) Probab=20.11 E-value=40 Score=12.01 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=11.3 Q ss_pred HHHHHHHHHHHCCCHHHH Q ss_conf 750013444427868999 Q gi|254780138|r 237 INEEIDAIRTMGLDFVRI 254 (373) Q Consensus 237 v~eeidAL~~~Gi~p~~~ 254 (373) .|..|.-|-.||.||.+- T Consensus 4 lnskiaqlvsmgfdplea 21 (40) T 1z96_A 4 LNSKIAQLVSMGFDPLEA 21 (40) T ss_dssp HHHHHHHHHHTTCCHHHH T ss_pred HHHHHHHHHHCCCCHHHH T ss_conf 647999999817887899 Done!