Query gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 373
No_of_seqs 186 out of 1048
Neff 6.2
Searched_HMMs 13730
Date Sun May 22 11:03:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780138.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vc1a_ c.13.2.1 (A:) Anti-sig 98.2 4.2E-06 3.1E-10 58.2 8.9 86 2-88 10-98 (110)
2 d1th8b_ c.13.2.1 (B:) Anti-sig 98.0 1.4E-05 1.1E-09 54.5 8.8 86 3-89 9-97 (115)
3 d1h4xa_ c.13.2.1 (A:) Anti-sig 97.9 2.8E-05 2.1E-09 52.4 8.0 85 3-88 8-95 (111)
4 d2ooka1 c.13.2.2 (A:2-126) Hyp 64.7 3.1 0.00023 17.0 4.0 51 3-53 16-67 (125)
5 d2q3la1 c.13.2.2 (A:1-125) Unc 59.5 3.8 0.00028 16.4 5.7 83 3-85 17-103 (125)
6 d1z96a1 a.5.2.1 (A:295-332) UB 21.8 15 0.0011 12.2 1.6 17 238-254 3-19 (38)
7 d2ixma1 a.268.1.1 (A:23-322) S 14.7 21 0.0016 11.1 5.6 109 41-149 8-127 (300)
8 d1zxoa1 c.55.1.5 (A:3-106) Hyp 11.2 14 0.0011 12.4 -1.2 14 238-251 18-31 (104)
9 d1x7da_ c.2.1.13 (A:) Ornithin 9.5 31 0.0022 10.0 1.9 54 33-86 281-337 (340)
10 d3bypa1 d.52.9.1 (A:6-87) Puta 8.4 36 0.0026 9.6 4.3 38 7-44 41-78 (82)
No 1
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=98.22 E-value=4.2e-06 Score=58.24 Aligned_cols=86 Identities=15% Similarity=0.334 Sum_probs=73.0
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH---CCCCCCCCCCCHHH
Q ss_conf 858827999840356355220079999864311678808997010515212999999999975---18764315899126
Q gi|254780138|r 2 SENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFMEK---YHGKIKLQGVSTHI 78 (373)
Q Consensus 2 s~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~~---~~~~~~~~~l~~~~ 78 (373)
.+++..++++.|+++..+...+++.+.+.+... ..+.+++|+++++.+||+|+..|.++.+. .+.+..+.+.++..
T Consensus 10 ~~~~~~vv~l~G~l~~~~~~~~~~~l~~~~~~~-~~~~vvid~~~v~~iDssg~~~l~~~~~~~~~~~~~l~l~~~~~~v 88 (110)
T d1vc1a_ 10 EQDDKAIVRVQGDIDAYNSSELKEQLRNFISTT-SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESI 88 (110)
T ss_dssp EETTEEEEEEESCBSTTTHHHHHHHHHHHHHHC-CCSEEEEEEEECCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHHH
T ss_pred EECCEEEEEEEEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 999999999998999699999999999887458-9879999989997658799999999999999689979999499999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999988642
Q gi|254780138|r 79 EQLFSLISFT 88 (373)
Q Consensus 79 ~~Ll~Ll~~~ 88 (373)
+++++.....
T Consensus 89 ~~~l~~~gl~ 98 (110)
T d1vc1a_ 89 SRILKLTHLD 98 (110)
T ss_dssp HHHHHHHTGG
T ss_pred HHHHHHCCCC
T ss_conf 9999985998
No 2
>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}
Probab=98.04 E-value=1.4e-05 Score=54.47 Aligned_cols=86 Identities=16% Similarity=0.345 Sum_probs=72.3
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH
Q ss_conf 5882799984035635522007999986431167880899701051521299999999997---5187643158991269
Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE 79 (373)
Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~ 79 (373)
+|+..++++.|+++..+...+.+.+.+.+... +.+.+++|+++++++|++|+..|.++.+ +.+.+....+.++..+
T Consensus 9 ~~~v~vv~l~G~L~~~~~~~~~~~l~~~~~~~-~~~~iilDls~v~~iDssg~~~L~~~~~~~~~~g~~l~l~~~~~~v~ 87 (115)
T d1th8b_ 9 KQDVLIVRLSGELDHHTAEELREQVTDVLENR-AIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPAVK 87 (115)
T ss_dssp ETTEEEEEEEEEESHHHHHHHHHHHHHHHHSS-CCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCCHHHH
T ss_pred ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 89999999989999799999999999998518-99799999878987887999999999999996899899997899999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999886422
Q gi|254780138|r 80 QLFSLISFTH 89 (373)
Q Consensus 80 ~Ll~Ll~~~~ 89 (373)
+.++......
T Consensus 88 ~~l~~~gl~~ 97 (115)
T d1th8b_ 88 RLFDMSGLFK 97 (115)
T ss_dssp HHHHHHTGGG
T ss_pred HHHHHCCCCC
T ss_conf 9999849986
No 3
>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Bacillus sphaericus [TaxId: 1421]}
Probab=97.89 E-value=2.8e-05 Score=52.42 Aligned_cols=85 Identities=18% Similarity=0.288 Sum_probs=70.4
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH---CCCCCCCCCCCHHHH
Q ss_conf 58827999840356355220079999864311678808997010515212999999999975---187643158991269
Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFMEK---YHGKIKLQGVSTHIE 79 (373)
Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~~---~~~~~~~~~l~~~~~ 79 (373)
+++..++++.|+.+..+...+.+++...+.. .+.+.+++|+++++++|++|+..|.++.+. .+.+..+.+++|..+
T Consensus 8 ~~~~~vv~~~G~L~~~~a~~~~~~~~~~i~~-~~~~~vvlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~ 86 (111)
T d1h4xa_ 8 TRETVVIRLFGELDHHAVEQIRAKISTAIFQ-GAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSPTMR 86 (111)
T ss_dssp ETTEEEEEEEEEECHHHHHHHHHHHHHHHHH-TSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESCCHHHH
T ss_pred ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 4878999999998779999999999999855-999699999889965492699999999999987799999965998999
Q ss_pred HHHHHHHHH
Q ss_conf 999988642
Q gi|254780138|r 80 QLFSLISFT 88 (373)
Q Consensus 80 ~Ll~Ll~~~ 88 (373)
+.++.....
T Consensus 87 ~~l~~~gl~ 95 (111)
T d1h4xa_ 87 KVFQFSGLG 95 (111)
T ss_dssp HHHHHTTCG
T ss_pred HHHHHCCCC
T ss_conf 999986998
No 4
>d2ooka1 c.13.2.2 (A:2-126) Hypothetical protein Sfri0576 {Shewanella frigidimarina [TaxId: 56812]}
Probab=64.70 E-value=3.1 Score=17.03 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=39.6
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCHHHHHH
Q ss_conf 588279998403563552200799998643116788-089970105152129
Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSD-SAIVDLSAITEIDTI 53 (373)
Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~-~i~iDls~i~~lDTA 53 (373)
+|....++++|..|...+..+.+.+...++.+.+.+ .+.+|..+...||-.
T Consensus 16 ~~~ii~~~~~G~lt~~D~~~~~~~le~~l~~~~~~~v~l~id~~~F~G~~~~ 67 (125)
T d2ooka1 16 SVFFVTLKAIGTLTHEDYLVITPMLEGALSQVDQPKVSLFLDATELDGWDLR 67 (125)
T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEECTT
T ss_pred CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHH
T ss_conf 9969999998777799999999999999986599618999991778999888
No 5
>d2q3la1 c.13.2.2 (A:1-125) Uncharacterized protein Shew3102 {Shewanella loihica [TaxId: 359303]}
Probab=59.47 E-value=3.8 Score=16.41 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=48.9
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCHHHHHHHHHHHHHHHHHCCCC---CCCCCCCHHH
Q ss_conf 588279998403563552200799998643116788-089970105152129999999999751876---4315899126
Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSD-SAIVDLSAITEIDTIGAELIMYFMEKYHGK---IKLQGVSTHI 78 (373)
Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~-~i~iDls~i~~lDTAGA~lL~~l~~~~~~~---~~~~~l~~~~ 78 (373)
+|....++++|..|...+..+.+.+...++.+.+.+ .+.+|..+.+.||-..+|-=.++-.++..+ +..++-+.=.
T Consensus 17 ~~~ii~~~~~G~lt~~D~~~~~~~l~~~l~~~~~~~v~~li~~~~F~G~~~~A~~ed~k~~~~h~~~f~RiAiV~d~~W~ 96 (125)
T d2q3la1 17 DDFYLAFKAVGKLTHEDYEQMTPLLESALAGIKTPEIVALIDITELDGLSLHAAWDDLKLGLKHGKEFKRVAIIGQGELQ 96 (125)
T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCCSSCEEEEEEEEEEEEECHHHHHHHHHHHHHHGGGEEEEEEECCSHHH
T ss_pred CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 97199999986688999999999999999736796499999707778997777888777677514043289999185999
Q ss_pred HHHHHHH
Q ss_conf 9999988
Q gi|254780138|r 79 EQLFSLI 85 (373)
Q Consensus 79 ~~Ll~Ll 85 (373)
+...++.
T Consensus 97 ~~~~~~~ 103 (125)
T d2q3la1 97 EWATRVA 103 (125)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999997
No 6
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=21.83 E-value=15 Score=12.25 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=11.2
Q ss_pred HHHHHHHHHHCCCHHHH
Q ss_conf 50013444427868999
Q gi|254780138|r 238 NEEIDAIRTMGLDFVRI 254 (373)
Q Consensus 238 ~eeidAL~~~Gi~p~~~ 254 (373)
|..|.-|-.||.||.+-
T Consensus 3 nskiaqlvsmgfdplea 19 (38)
T d1z96a1 3 NSKIAQLVSMGFDPLEA 19 (38)
T ss_dssp HHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHCCCCHHHH
T ss_conf 14899999827887899
No 7
>d2ixma1 a.268.1.1 (A:23-322) Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.73 E-value=21 Score=11.15 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=62.1
Q ss_pred EEEECCCHHHHHHHHHH-----HHHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHH
Q ss_conf 99701051521299999-----99999751876--43158991269999988642220112456533543--11366589
Q gi|254780138|r 41 IVDLSAITEIDTIGAEL-----IMYFMEKYHGK--IKLQGVSTHIEQLFSLISFTHRKKIKNQKPQRSFF--YNSFKNLH 111 (373)
Q Consensus 41 ~iDls~i~~lDTAGA~l-----L~~l~~~~~~~--~~~~~l~~~~~~Ll~Ll~~~~~~~~~~~~~~~~~~--~~~~~~~~ 111 (373)
+.+.++++.|-.+-|.. +.++.+....+ -.....++..++++++++...+-..+.||.+.+.+ -..++.|.
T Consensus 8 I~~~~D~~~f~~S~ay~~i~~fI~~l~~sv~g~~~~~~~~~S~~i~~l~~iL~~l~~~i~e~PP~~~~~RFGN~afR~w~ 87 (300)
T d2ixma1 8 IHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFEYRVSEAIEKLLALLNTLDRWIDETPPVDQPSRFGNKAYRTWY 87 (300)
T ss_dssp CCSSHHHHHHHTBHHHHHHHHHHHHHHHHTTTCCTTCCCCCCHHHHHHHHHHHHHHHHHHTSCCCCCSCSSSCTHHHHHH
T ss_pred CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 38876888884388999999999999998548768988888989999999999999998508999888776867999999
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99859999999999999--999999999999997402678
Q gi|254780138|r 112 YHIGKKIVKFINDSCSQ--AHILGLVISNTGEFCASSYKF 149 (373)
Q Consensus 112 ~~iG~~~~~~~~~~~~~--~~f~G~~~~~~~~~~~~~~~~ 149 (373)
.++-+...++..+.... -..+-|....+.+.+.++.|.
T Consensus 88 ~~l~~~~~~ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRi 127 (300)
T d2ixma1 88 AKLDEEAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRI 127 (300)
T ss_dssp HHHHHHHHHHHHTTSCGGGGGGHHHHHHHHHTSSCBTTTT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999989999998658302445899999998565987024
No 8
>d1zxoa1 c.55.1.5 (A:3-106) Hypothetical protein BT3618 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=11.22 E-value=14 Score=12.35 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCH
Q ss_conf 50013444427868
Q gi|254780138|r 238 NEEIDAIRTMGLDF 251 (373)
Q Consensus 238 ~eeidAL~~~Gi~p 251 (373)
++++.-.+|+|+||
T Consensus 18 g~~~~~~~T~G~NP 31 (104)
T d1zxoa1 18 GAVIKRLGTKGINP 31 (104)
T ss_dssp SSEEEEEEECCCCT
T ss_pred CCEEEEEECCCCCC
T ss_conf 98588987276076
No 9
>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}
Probab=9.53 E-value=31 Score=10.04 Aligned_cols=54 Identities=22% Similarity=0.188 Sum_probs=0.0
Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC--CCCCCCCC-CCHHHHHHHHHHH
Q ss_conf 116788089970105152129999999999751--87643158-9912699999886
Q gi|254780138|r 33 KSIQSDSAIVDLSAITEIDTIGAELIMYFMEKY--HGKIKLQG-VSTHIEQLFSLIS 86 (373)
Q Consensus 33 ~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~~~--~~~~~~~~-l~~~~~~Ll~Ll~ 86 (373)
+........+|..++.-.|-+-+..+++-.++. +.+.++.. .++.++.++.+++
T Consensus 281 R~~~~~itvfksvG~ai~Dla~a~~v~~~A~~~g~G~~l~l~~~~~~d~~~~~~~~~ 337 (340)
T d1x7da_ 281 RQSDSQVTVFDSVGFALEDYTVLRYVLQQAEKRGMGTKIDLVPWVEDDPKDLFSHTR 337 (340)
T ss_dssp CCCTTCCEEEECCCCHHHHHHHHHHHHHHHHTTTCCEECCSSCCCCSCTTCCGGGGS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHC
T ss_conf 899997399979983999999999999999974997798646678778755456653
No 10
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}
Probab=8.41 E-value=36 Score=9.56 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=0.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 79998403563552200799998643116788089970
Q gi|254780138|r 7 TVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDL 44 (373)
Q Consensus 7 ~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDl 44 (373)
+.+.+.++|++.....+.+++.+.+........+.+..
T Consensus 41 ~hi~v~~~~sv~~aH~i~~~ve~~i~~~~~~~~v~vHv 78 (82)
T d3bypa1 41 FHLVVRGDTPVEEAHRLCDELERALAQAFPGLQATIHV 78 (82)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99998989989999999999999999658997799995
Done!