RPSBLAST alignment for GI: 254780139 and conserved domain: TIGR01193
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708
Score = 64.8 bits (158), Expect = 2e-11
Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 18/225 (8%)
Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL-NLAKGK 83
IL++I+L I ++G SG+GKS L + ++G SGE+ + G L ++ +
Sbjct: 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRH- 544
Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH---IVHTKIAIVGLP 140
+ L Q +FS ++ EN+ + KE N+ D I I K I +P
Sbjct: 545 ---TLRQFINYLPQEPYIFSG-SILENLLLGAKE--NVSQDEIWAACEIAEIKDDIENMP 598
Query: 141 ---PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197
+ +SGG +R++LARAL D +L LDE TS LD I ++ L+ L+
Sbjct: 599 LGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ 658
Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
++ + H L ++ +++ V+ I+++G+ +++D N
Sbjct: 659 DK---TIIFVAHRL-SVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699