RPSBLAST alignment for GI: 254780139 and conserved domain: cd03270

>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 226
 Score = 37.5 bits (87), Expect = 0.003
 Identities = 52/216 (24%), Positives = 82/216 (37%), Gaps = 62/216 (28%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSIL--------------------------------M 56
           L N+++DI R +++ + G SG+GKS L                                +
Sbjct: 11  LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDV 70

Query: 57  RGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIK 116
             I GL P ++ + K    +     G     +   L +LF                + I+
Sbjct: 71  DSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYD-YLRLLFAR--------------VGIR 115

Query: 117 EHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPD--LLFL 174
           E L     L++         VGL   T +     LSGG  +R+ LA  +       L  L
Sbjct: 116 ERLGF---LVD---------VGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL 163

Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210
           DEP+ GL P   +   + L +LR  LG +V ++ HD
Sbjct: 164 DEPSIGLHPRDNDRLIETLKRLR-DLGNTVLVVEHD 198