RPSBLAST alignment for GI: 254780139 and conserved domain: cd03271

>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261
 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 52/252 (20%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L NI++DI  G +  V G SG+GKS L+   L   P ++  + +  E        +    
Sbjct: 11  LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLY--PALARRLHLKKEQPGNHDRIEGLEH 68

Query: 89  SAKLGVLFQ-----------------------------HGALFSSMTVQ-----ENIS-- 112
             K+ V+ Q                              G  ++  T++     ++I+  
Sbjct: 69  IDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADV 128

Query: 113 --MPIKEHLNLPADL--IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARAL--- 165
             M ++E L    ++  I   + T +  VGL           LSGG  +R+ LA+ L   
Sbjct: 129 LDMTVEEALEFFENIPKIARKLQT-LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKR 187

Query: 166 AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH--SLGLSVYMITHDLNNLISTCNRVAV 223
           +    L  LDEPT+GL      +  KLL  L+     G +V +I H+L ++I   + +  
Sbjct: 188 STGKTLYILDEPTTGLHF---HDVKKLLEVLQRLVDKGNTVVVIEHNL-DVIKCADWIID 243

Query: 224 IQKKGIMKEGTI 235
           +  +G    G +
Sbjct: 244 LGPEGGDGGGQV 255