RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus Liberibacter asiaticus str. psy62] (257 letters) >gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 263 Score = 296 bits (760), Expect = 4e-81 Identities = 117/244 (47%), Positives = 175/244 (71%) Query: 8 SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67 + E ++ VR +T +R+IL+ ++LD+ RGEIL ++G SG+GKS L+R ILGL+ Sbjct: 3 ASPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK 62 Query: 68 GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127 GE+ + GE + ++ + ++GVLFQ GALFSS+TV EN++ P++EH LP LI Sbjct: 63 GEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIR 122 Query: 128 HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187 +V K+ +VGL A+L P +LSGGM KRV+LARA+A+DP+LLFLDEPTSGLDPI+A Sbjct: 123 ELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG 182 Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247 D+L+ +L +LGL+V M+THDL++L++ +RVAV+ ++ EGT +++ S+DPW+R Sbjct: 183 VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVR 242 Query: 248 SYFN 251 +FN Sbjct: 243 QFFN 246 >gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 269 bits (690), Expect = 4e-73 Identities = 106/236 (44%), Positives = 154/236 (65%), Gaps = 1/236 (0%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 + +R LT R +L ++LD+ RGEIL +IG SG+GKS L+R I+GL+ SGEV + Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 GE ++ + + ++G+LFQ GALF S+TV EN++ P++EH L + I IV K Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK 120 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 + VGL +L P +LSGGM KRV+LARALA+DP+LL DEPT+GLDPIA+ D L+ Sbjct: 121 LEAVGLRG-AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLI 179 Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSY 249 L+ LGL+ M+THDL+ + +R+AV+ I+ EGT ++ S+DP +R + Sbjct: 180 RSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDPLVRQF 235 >gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.. Length = 228 Score = 177 bits (451), Expect = 2e-45 Identities = 84/228 (36%), Positives = 127/228 (55%), Gaps = 7/228 (3%) Query: 13 ILSVRNLTIELNNRI----ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68 +L V+NL++ L++++ I +GE LG++G SG+GKS L R ILGL+ SG Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60 Query: 69 EVKVLGEHLNLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISMPIKEHLNL-PADL 125 + G+ L + ++ ++FQ +L MT+ E I+ P++ H L + Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120 Query: 126 IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 + V + VGLP E N P +LSGG +RV++ARALA++P LL DEPTS LD Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 + LL KL+ LGL++ ITHDL + +RVAV+ I++EG Sbjct: 181 QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 >gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 339 Score = 173 bits (440), Expect = 5e-44 Identities = 84/212 (39%), Positives = 129/212 (60%), Gaps = 2/212 (0%) Query: 27 IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNF 86 L++++L+I +GEI G+IG SG GKS L+R I L SG V V G+ L + Sbjct: 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 Query: 87 AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL 146 K+G++FQH L SS TV EN++ P+ E +P I+ V + +VGL + A+ Sbjct: 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPL-ELAGVPKAEIKQRVAELLELVGLS-DKADR 137 Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206 P QLSGG +RV++ARALA +P +L DE TS LDP + +LL + LGL++ + Sbjct: 138 YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVL 197 Query: 207 ITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 ITH++ + C+RVAV+ + +++EGT+S++ Sbjct: 198 ITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 >gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]. Length = 539 Score = 171 bits (436), Expect = 1e-43 Identities = 86/248 (34%), Positives = 135/248 (54%), Gaps = 14/248 (5%) Query: 7 PSQEEKILSVRNLT------IELNNRII-----LNNINLDILRGEILGVIGSSGTGKSIL 55 P + E +LSVRNL+ L R +++++ D+ GE LG++G SG+GKS L Sbjct: 274 PLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTL 333 Query: 56 MRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISM 113 R + GL+P SG + G+ L+L G+ ++ ++FQ +L MTV + ++ Sbjct: 334 ARILAGLLPPSSGSIIFDGQDLDLTGGELR-RLRRRIQMVFQDPYSSLNPRMTVGDILAE 392 Query: 114 PIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLF 173 P++ H V + +VGLPPE + P +LSGG +RV++ARALA++P LL Sbjct: 393 PLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLI 452 Query: 174 LDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 LDEP S LD + LL L+ LGL+ I+HDL + +RVAV+ I++EG Sbjct: 453 LDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 Query: 234 TISDIVDS 241 + ++ Sbjct: 513 PTEKVFEN 520 Score = 162 bits (412), Expect = 8e-41 Identities = 80/241 (33%), Positives = 124/241 (51%), Gaps = 12/241 (4%) Query: 13 ILSVRNLTIELNNR----IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP---- 64 +L V NLT+E + +++ ++ GEILG++G SG+GKS L ++GL+P Sbjct: 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64 Query: 65 RVSGEVKVLGEHLNLAKGKQNFAF-SAKLGVLFQH--GALFSSMTVQENISMPIKEHLNL 121 SGEV + G L ++ ++ ++FQ +L MT+ + I ++ H Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG 124 Query: 122 PADLIEHIVHTKIAIVGLP-PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180 + VGLP PE + P QLSGGM +RV +A ALA+ P LL DEPT+ Sbjct: 125 SRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTA 184 Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 LD + LL L+ LG++V ITHDL + +RV V+ K I++ G +I+ Sbjct: 185 LDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244 Query: 241 S 241 + Sbjct: 245 N 245 >gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 233 Score = 169 bits (431), Expect = 5e-43 Identities = 87/212 (41%), Positives = 129/212 (60%), Gaps = 2/212 (0%) Query: 27 IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNF 86 L +++L + +GEI G+IG SG GKS L+R I GL SG V V G L L GK+ Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78 Query: 87 AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL 146 ++G++FQH L SS TV EN+++P+ E +P IE V + +VGL + A+ Sbjct: 79 KARRRIGMIFQHFNLLSSRTVFENVALPL-EIAGVPKAEIEERVLELLELVGLE-DKADA 136 Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206 P QLSGG +RV +ARALA +P +L DE TS LDP + LL + LGL++ + Sbjct: 137 YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVL 196 Query: 207 ITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 ITH++ + C+RVAV++K +++EGT+ ++ Sbjct: 197 ITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 >gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]. Length = 293 Score = 165 bits (419), Expect = 1e-41 Identities = 76/231 (32%), Positives = 131/231 (56%), Gaps = 7/231 (3%) Query: 12 KILSVRNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 +++ VRNLT + ++ L+ ++ ++ GEI G++G +G GK+ L++ + GL+ SGE+ Sbjct: 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130 VLG + K+ ++G + Q +L+ +TV+EN+ + + L + E + Sbjct: 63 LVLGYDVV----KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY-GLSKEEAEERI 117 Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190 + + GL + AN LSGGM +R+S+A AL DP+LL LDEPTSGLDP + E Sbjct: 118 EELLELFGLEDK-ANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176 Query: 191 KLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 +LL +L G+++ + TH L C+RV ++ I+ EGT ++ + Sbjct: 177 ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 >gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 161 bits (410), Expect = 2e-40 Identities = 79/231 (34%), Positives = 119/231 (51%), Gaps = 18/231 (7%) Query: 14 LSVRNLTI----ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69 L VRN++ L +I+L + GE + ++G SG GKS L+R I GL SGE Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60 Query: 70 VKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHI 129 V V GE + G +FQ AL +TV +N+++ ++ +P Sbjct: 61 VLVDGEPVT--------GPGPDRGYVFQQDALLPWLTVLDNVALGLELQ-GVPKAEARER 111 Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189 + +VGL N P QLSGGM +RV+LARALA+DPD+L LDEP S LD + E+ Sbjct: 112 AEELLELVGLS-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL 170 Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 + L+ + G +V ++THD++ + +RV V+ + G I V+ Sbjct: 171 QEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARP----GRIVAEVE 217 >gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 178 Score = 161 bits (409), Expect = 2e-40 Identities = 76/212 (35%), Positives = 114/212 (53%), Gaps = 37/212 (17%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L ++N++ + +LN+++L+I GEI+ ++G SG+GKS L+R I GL SG + + Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 GE L + ++G++FQ ALF +TV ENI++ Sbjct: 61 GEDLT-DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------- 100 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 LSGG +RV+LARALA+DPD+L LDEPTS LDPI E LL Sbjct: 101 -----------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALL 143 Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQ 225 L+ LG++V ++THDL+ +RV V++ Sbjct: 144 KSLQAQLGITVVLVTHDLDEAARLADRVVVLR 175 >gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 316 Score = 159 bits (404), Expect = 6e-40 Identities = 75/245 (30%), Positives = 135/245 (55%), Gaps = 17/245 (6%) Query: 13 ILSVRNLTIELNNRI----ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR--- 65 +L V+NL++ ++ ++ ++ +GEILG++G SG+GKS+L + I+GL+P+ Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60 Query: 66 --VSGEVKVLGEHL-NLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISMPIKEHLN 120 V GE+ G+ L +L++ + ++ ++FQ +L MT+ + I+ ++ H Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK 120 Query: 121 LP--ADLIEHIVHTKIAIVGLPP--ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176 + E + + +VG+P P +LSGGM +RV +A ALA++P LL DE Sbjct: 121 GLSKKEAKERAIEL-LELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADE 179 Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTIS 236 PT+ LD + LL +L+ G ++ +ITHDL + +RVAV+ I++EG + Sbjct: 180 PTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVE 239 Query: 237 DIVDS 241 +I + Sbjct: 240 EIFKN 244 >gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 213 Score = 159 bits (404), Expect = 6e-40 Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 15/223 (6%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L ++ L+ + L++++L + GE L ++G SG GK+ L+R I GL SGE+ + Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60 Query: 74 GEHL-NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 G + + ++N +G++FQ ALF +TV ENI+ +K +P I V Sbjct: 61 GRDVTGVPPERRN------IGMVFQDYALFPHLTVAENIAFGLKLRG-VPKAEIRARVRE 113 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 + +VGL N P +LSGG +RV+LARALA +P LL LDEP S LD EE + Sbjct: 114 LLELVGLEGL-LNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE 172 Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235 L +L+ LG++ +THD ++ +R+AV M EG I Sbjct: 173 LKELQRELGITTIYVTHDQEEALALADRIAV------MNEGRI 209 >gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 248 Score = 158 bits (402), Expect = 1e-39 Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 14/228 (6%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 +L + ++ +L +INL + +GE + ++G SG GKS L+R I GL SGEV + Sbjct: 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 G + +G +FQ AL +TV +N+++ ++ A+ E Sbjct: 63 DGRPVT--------GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE-RAKE 113 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 + +VGL + P QLSGGM +RV++ARALA P LL LDEP LD + EE Sbjct: 114 LLELVGLA-GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE 172 Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 L++L +V ++THD++ + +RV V+ + G I + ++ Sbjct: 173 LLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSN----RPGRIGEELE 216 >gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 252 Score = 152 bits (385), Expect = 9e-38 Identities = 84/234 (35%), Positives = 128/234 (54%), Gaps = 11/234 (4%) Query: 14 LSVRNLTIELNNRI----ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69 LSVRNL+I LNN++L+I RGE LG++G SG+GKS L R + GL SG Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63 Query: 70 VKVLGEHLNLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISMPIKEHLNLPADLIE 127 + + G+ L A K+ AF + ++FQ +L TV +S P++ H + Sbjct: 64 ILLDGKPL--APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKSQ 118 Query: 128 HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187 + + VGLPP + P +LSGG +R+++ARAL +P LL LDEPTS LD Sbjct: 119 QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178 Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 + LL++L+ GL+ I+HDL + C+R+AV+ I++ G +++ Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 >gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).. Length = 227 Score = 152 bits (385), Expect = 1e-37 Identities = 63/217 (29%), Positives = 114/217 (52%), Gaps = 10/217 (4%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP-----RVSG 68 + +R+L + ++ L +I+LDI +GEI +IG SG GKS L+R + L G Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60 Query: 69 EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128 EV + G+ + ++G++FQ F ++ +N++ ++ H + ++ Sbjct: 61 EVLLDGKDIY-DLDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDE 118 Query: 129 IVHTKIAIVGLPPETAN-LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187 V + L E + L LSGG +R+ LARALA +P++L LDEPTS LDPI+ Sbjct: 119 RVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTA 178 Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224 + ++L+ +L+ ++ ++TH++ +R A + Sbjct: 179 KIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFL 213 >gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]. Length = 240 Score = 151 bits (384), Expect = 1e-37 Identities = 74/242 (30%), Positives = 129/242 (53%), Gaps = 5/242 (2%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 ++ ++NL+ ++ +L I+L + +GE++ +IG SG+GKS L+R + GL SG + V Sbjct: 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 GE ++ K K+G++FQ LF +TV EN+++ + L Sbjct: 62 DGE--DVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALE 119 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 + VGL + A+ P QLSGG +RV++ARALA+DP ++ DEPTS LDP E + Sbjct: 120 LLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV 178 Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD-SNDPWIRSYFN 251 + L G+++ ++TH++ +RV + + I++EG + D R + + Sbjct: 179 MKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQFLS 237 Query: 252 RF 253 + Sbjct: 238 KI 239 >gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 345 Score = 151 bits (382), Expect = 2e-37 Identities = 79/249 (31%), Positives = 123/249 (49%), Gaps = 8/249 (3%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 + + N+ L++I+LDI GE++ ++G SG GKS L+R I GL +G +++ Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEH-LNLPADLIEHIVHT 132 G L K+G +FQH ALF MTV +NI+ +K I V Sbjct: 63 GR--VLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEE 120 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 + +V L A+ P QLSGG +RV+LARALA++P +L LDEP LD +E + Sbjct: 121 LLRLVQLEG-LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW 179 Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD-SNDPWIRSYF- 250 L KL LG++ +THD + +RV V+ + I + G ++ D ++ + Sbjct: 180 LRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFLG 239 Query: 251 --NRFTKRI 257 N + Sbjct: 240 EVNVLPGEV 248 >gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 352 Score = 151 bits (382), Expect = 2e-37 Identities = 81/229 (35%), Positives = 130/229 (56%), Gaps = 8/229 (3%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 L +RN++ + +++I+LDI +GE + ++G SG GK+ L+R I G SGE+ + Sbjct: 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILL 64 Query: 73 LGEHL-NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131 GE + ++ K+ +G++FQ ALF MTV+EN++ +K L I+ V Sbjct: 65 DGEDITDVPPEKRP------IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 + +VGL A+ P QLSGG +RV+LARAL +P +L LDEP S LD E+ K Sbjct: 119 EALELVGLE-GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRK 177 Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 L +L+ LG++ +THD ++ +R+AV+ I + GT +I + Sbjct: 178 ELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 >gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 211 Score = 150 bits (380), Expect = 4e-37 Identities = 82/215 (38%), Positives = 130/215 (60%), Gaps = 9/215 (4%) Query: 15 SVRNLTIELNN--RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 ++NL+ + R L++I+L I +GE + ++G +G+GKS L+R + GL+ SGEV V Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGAL-FSSMTVQENISMPIKEHLNLPADLIEHIVH 131 G+ L K+ K+G++FQ+ F TV+E ++ + E+L LP + IE V Sbjct: 61 DGKDLTKLSLKE---LRRKVGLVFQNPDDQFFGPTVEEEVAFGL-ENLGLPEEEIEERVE 116 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 + +VGL + PF LSGG +RV++A LA+DPD+L LDEPT+GLDP E + Sbjct: 117 EALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE 175 Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226 LL KL + G ++ ++THDL+ L+ +RV V++ Sbjct: 176 LLKKL-KAEGKTIIIVTHDLDLLLELADRVIVLED 209 >gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 226 Score = 147 bits (373), Expect = 3e-36 Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 7/225 (3%) Query: 13 ILSVRNLT----IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68 ++ ++N++ + L ++NL+I GE + ++G SG+GKS L+ + GL SG Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60 Query: 69 EVKVLGEHLNLAKGKQNFAFSAK-LGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127 EV + G+ L K+ K +G +FQ+ L +TV EN+ +P+ A + Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA-GKSAGRRK 119 Query: 128 HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187 + ++GL P +LSGG +RV++ARAL +P ++ DEPT LD A+ Sbjct: 120 RAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179 Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232 E +LL +L G ++ M+THD L +RV ++ I +E Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP-ELAKYADRVIELKDGKIEEE 223 >gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 146 bits (370), Expect = 5e-36 Identities = 79/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%) Query: 12 KILSVRNLTIELNNR-IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 +++ NL+ R L +++L+I +GE + +IG +G+GKS L++ + GL+ SGEV Sbjct: 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSM-TVQENISMPIKEHLNLPADLIEHI 129 V G + K K+G++FQ+ TV++ ++ + E+L LP + IE Sbjct: 62 LVDGLDTSSEKSL--LELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLGLPREEIEER 118 Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189 V + +VGL E + PF LSGG +RV++A LA+ P++L LDEPT+GLDP E Sbjct: 119 VAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177 Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243 +LL KL+ G ++ ++THDL ++ +RV V+ I+ +G ++I + + Sbjct: 178 LELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAE 231 >gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 254 Score = 145 bits (367), Expect = 1e-35 Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 13/224 (5%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 ++ V NLT+ NR +L +I+L + +GEI +IG +G GKS L++ ILGL+ SGE+ Sbjct: 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSS--MTVQENISMPIKEHLNLPADLIEH 128 K+ G+ + + + ++G + Q ++ S +TV++ + + L + Sbjct: 62 KIFGKPVRKRRKRL------RIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKK 115 Query: 129 ---IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 V + VG+ + + +LSGG +RV LARALA +PDLL LDEP +G+D Sbjct: 116 DKEKVDEALERVGM-EDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG 174 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGI 229 +E LL +LR G +V M+THDL +++ +RV + + I Sbjct: 175 QKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRHLI 217 >gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]. Length = 258 Score = 144 bits (366), Expect = 2e-35 Identities = 75/231 (32%), Positives = 124/231 (53%), Gaps = 7/231 (3%) Query: 12 KILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 +L V NL+ + IL++++ I +GEI G++G +G+GKS L++ + GL+ SGEV Sbjct: 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL---PADLIEH 128 + G+ + K+ + KL + Q + +TV E + + HL L P+ E Sbjct: 61 LDGKDIASLSPKE---LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE 117 Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188 IV + ++GL + +LSGG +RV +ARALA + +L LDEPTS LD E Sbjct: 118 IVEEALELLGLEHLADRPV-DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIE 176 Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239 +LL L GL+V M+ HDLN + + +++ I+ +GT +++ Sbjct: 177 VLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 >gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269 Score = 144 bits (364), Expect = 3e-35 Identities = 77/224 (34%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 +N+++LD+ GEI ++G SG+GKS L+R I LI SG+V + G+ + K+ Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 Query: 89 -SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147 K+ ++FQ AL TV EN++ + E +P E + +VGL + Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGL-EVQGVPRAEREERAAEALELVGLEGW-EHKY 157 Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207 P +LSGGM +RV LARALA+DPD+L +DE S LDP+ E L++L+ L ++ I Sbjct: 158 PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFI 217 Query: 208 THDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS-NDPWIRSYF 250 THDL+ + +R+A+++ +++ GT +I+ + + ++R +F Sbjct: 218 THDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFF 261 >gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 309 Score = 143 bits (362), Expect = 5e-35 Identities = 74/228 (32%), Positives = 127/228 (55%), Gaps = 5/228 (2%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 ++ N++ N+ ++++NL I GE L +IG SG+GK+ ++ I LI SGE+ + Sbjct: 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 GE ++ K+G + Q LF +TV ENI+ + + L + I+ Sbjct: 61 DGEDISDLDP---VELRRKIGYVIQQIGLFPHLTVAENIAT-VPKLLGWDKERIKKRADE 116 Query: 133 KIAIVGLPP-ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 + +VGL P E A+ P +LSGG +RV +ARALA DP +L +DEP LDPI ++ + Sbjct: 117 LLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQE 176 Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239 + +L+ LG ++ +THD++ + +R+AV+ I++ T +I+ Sbjct: 177 EIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224 >gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 173 Score = 143 bits (362), Expect = 5e-35 Identities = 72/216 (33%), Positives = 117/216 (54%), Gaps = 43/216 (19%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 + VRNL+ + L++I+L + +GEI G++G +G GK+ L++ ILGL+ SGE+KVL Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 G+ + K+ ++G L + +L+ ++TV+EN+ Sbjct: 61 GKDI----KKEPEEVKRRIGYLPEEPSLYENLTVRENL---------------------- 94 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 +LSGGM +R++LA+AL DP+LL LDEPTSGLDP + EF +LL Sbjct: 95 ----------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138 Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGI 229 +L+ G ++ + +H L C+RVA++ I Sbjct: 139 RELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173 >gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]. Length = 386 Score = 142 bits (359), Expect = 9e-35 Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 10/232 (4%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 +N+ +LD+ GEI ++G SG+GKS L+R + LI GE+ V G+ + + Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103 Query: 89 SA-KLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147 K+ ++FQ AL TV EN++ + E +P E + +VGL A+ Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGL-EVQGVPKAEREERALEALELVGLEG-YADKY 161 Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207 P +LSGGM +RV LARALA DPD+L +DE S LDP+ E L++L+ L ++ I Sbjct: 162 PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFI 221 Query: 208 THDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS--NDPWIRSYFNRFTKRI 257 THDL+ + +R+A+++ I++ GT +I+ + ND Y F + + Sbjct: 222 THDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPAND-----YVRDFVRNV 268 >gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.. Length = 213 Score = 141 bits (358), Expect = 1e-34 Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 15/221 (6%) Query: 15 SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG 74 V +LT+ +L +++ ++ GE L ++G +G GKS L++ ILGL+ SG ++V G Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60 Query: 75 EHLNLAKGKQNFAFSAKLGVLFQHGALFSSM--TVQENISMPIKEHLNL---PADLIEHI 129 + L ++G + Q ++ +V++ + M + H L + + Sbjct: 61 KPLEK--------ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112 Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189 V + VGL E A+ +LSGG +RV LARAL DPDLL LDEP +G+DP E+ Sbjct: 113 VDEALERVGL-SELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI 171 Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIM 230 +LL +L G+++ ++THDL ++ +RV ++ + + Sbjct: 172 YELLREL-RREGMTILVVTHDLGLVLEYFDRVLLLNRTVVA 211 >gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.. Length = 218 Score = 141 bits (357), Expect = 2e-34 Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 8/217 (3%) Query: 14 LSVRNLT----IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69 + ++NL+ L ++L I +GE + ++G SG+GKS L+ + GL SGE Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60 Query: 70 VKVLGEHLNLAKGKQNFAFSAK-LGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128 V+V G ++ K+ AF + +G +FQ L +T EN+ +P+ +P Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPL-LLAGVPKKERRE 119 Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188 + VGL + N P +LSGG +RV++ARALA DP ++ DEPT LD +E Sbjct: 120 RAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKE 178 Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQ 225 +LL +L G ++ ++THD L +R+ ++ Sbjct: 179 VMELLRELNKEAGTTIVVVTHD-PELAEYADRIIELR 214 >gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.. Length = 213 Score = 140 bits (355), Expect = 3e-34 Identities = 69/208 (33%), Positives = 112/208 (53%), Gaps = 3/208 (1%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 + ++NL + +L I+L + +GE++ +IG SG+GKS L+R I L SG + + Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 G L K K K+G++FQ LF +TV ENI++ + + E Sbjct: 61 GLKLTDDK-KNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALEL 119 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 + VGL + A+ P QLSGG +RV++ARALA++P ++ DEPTS LDP E ++ Sbjct: 120 LEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178 Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRV 221 L G+++ ++TH++ +RV Sbjct: 179 KDLAEE-GMTMVVVTHEMGFAREVADRV 205 >gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 250 Score = 136 bits (343), Expect = 7e-33 Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 20/245 (8%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 +L VR L+ +N+++L++ GEI+G+IG +G GK+ L I G SG V Sbjct: 4 LLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIF 63 Query: 73 LGEHLNLAKGKQNFAFSAKLGVL--FQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130 G + + A+LG+ FQ LF +TV EN+++ L L L Sbjct: 64 RGRDITGLPPHR----IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRA 119 Query: 131 HTK-----------IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTS 179 + + VGL A+ LS G +R+ +ARALA P LL LDEP + Sbjct: 120 RKEEREARERARELLEFVGLGEL-ADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAA 178 Query: 180 GLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239 GL+P EE +L+ +LR G+++ +I HD+ ++ +R+ V+ ++ EGT ++ Sbjct: 179 GLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 Query: 240 DSNDP 244 N+P Sbjct: 239 --NNP 241 >gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 242 Score = 135 bits (341), Expect = 1e-32 Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 5/214 (2%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 +NN+NL+I +GE L +IG SG+GK+ M+ I LI SGE+ + GE + + Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVE---L 73 Query: 89 SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET-ANLM 147 K+G + Q LF MTV+ENI++ + + L P + I +A+VGL P A+ Sbjct: 74 RRKIGYVIQQIGLFPHMTVEENIAL-VPKLLKWPKEKIRERADELLALVGLDPAEFADRY 132 Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207 P +LSGG +RV +ARALA DP LL +DEP LDPI ++ + +L+ LG ++ + Sbjct: 133 PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFV 192 Query: 208 THDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 THD++ +R+A+++ I++ GT +I+ S Sbjct: 193 THDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 >gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).. Length = 236 Score = 134 bits (338), Expect = 4e-32 Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 19/242 (7%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L VR LT + L++++ + GEI G+IG +G GK+ L I G + SG V Sbjct: 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFD 60 Query: 74 GEHLNLAKGKQNFAFSAKLGVL--FQHGALFSSMTVQENISMPIKEHLNLPADL------ 125 GE + G A+LG+ FQ LF +TV EN+ + + L Sbjct: 61 GEDIT---GLPPHEI-ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARRE 116 Query: 126 ---IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 + VGL A+ +LS G +R+ +ARALA DP LL LDEP +GL+ Sbjct: 117 EREARERAEELLERVGLADL-ADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175 Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242 P EE +L+ +LR G++V ++ HD++ ++S +RV V+ + ++ EGT ++ N Sbjct: 176 PEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR--N 232 Query: 243 DP 244 +P Sbjct: 233 NP 234 >gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 232 Score = 133 bits (337), Expect = 4e-32 Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 + + N++ + L+ ++LDI GE ++G SG GK+ L+R I G SGE+ + Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60 Query: 74 GEHL-NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 G+ + NL K+ +FQ+ ALF +TV ENI+ ++ LP I+ V Sbjct: 61 GKDITNLPPHKRPV------NTVFQNYALFPHLTVFENIAFGLR-LKKLPKAEIKERVAE 113 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 + +V L AN P QLSGG +RV++ARAL +P +L LDEP LD ++ Sbjct: 114 ALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE 172 Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 L +L+ LG++ +THD ++ +R+AV+ K I + GT +I + Sbjct: 173 LKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 >gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 239 Score = 133 bits (337), Expect = 4e-32 Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 9/229 (3%) Query: 16 VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE 75 VRN++ + + L++++LDI GE++ ++G SG+GK+ L+R I GL SG + GE Sbjct: 5 VRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGE 64 Query: 76 HLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKE---HLNLPADLIEHIVHT 132 ++ +G +FQH ALF MTV +N++ ++ P I VH Sbjct: 65 DATDVPVQER-----NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHE 119 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 + +V L A+ P QLSGG +RV+LARALA++P +L LDEP LD +E + Sbjct: 120 LLKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW 178 Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 L +L L ++ +THD + +RV V+ K I + GT ++ D Sbjct: 179 LRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 >gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]. Length = 534 Score = 133 bits (337), Expect = 4e-32 Identities = 79/255 (30%), Positives = 126/255 (49%), Gaps = 15/255 (5%) Query: 8 SQEEKILSVRNLTIELNN----RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI 63 +LS+RNL++ + + I+ DI GE L ++G SG+GKS+ ILGL+ Sbjct: 1 MMTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL 60 Query: 64 P-----RVSGEVKVLGEH-LNLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISMPI 115 P SG + GE L ++ + K+G++FQ +L T+ + ++ + Sbjct: 61 PSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVL 120 Query: 116 KEHLNLPADLIEHIVHTKIAIVGLPPETANL--MPFQLSGGMIKRVSLARALAIDPDLLF 173 + H L + +VG+P L P +LSGG +RV +A ALA +PDLL Sbjct: 121 RLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLI 180 Query: 174 LDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 DEPT+ LD + LL +L+ LG+++ ITHDL + +RV V+Q I++ G Sbjct: 181 ADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETG 240 Query: 234 TISDIV-DSNDPWIR 247 T + P+ R Sbjct: 241 TTETLFAAPQHPYTR 255 Score = 132 bits (334), Expect = 8e-32 Identities = 79/249 (31%), Positives = 131/249 (52%), Gaps = 15/249 (6%) Query: 7 PSQEEKILSVRNLTI-----------ELNNRIILNNINLDILRGEILGVIGSSGTGKSIL 55 P +L V +L + +++ ++ I+L + RG+ LG++G SG+GKS L Sbjct: 270 PEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTL 329 Query: 56 MRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQ--HGALFSSMTVQENISM 113 +L LIP GE++ G+ ++ K+ ++ V+FQ +G+L MTV + I Sbjct: 330 GLALLRLIPS-QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEE 388 Query: 114 PIKEH-LNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLL 172 ++ H L A + V + VGL P T N P + SGG +R+++ARAL + P+L+ Sbjct: 389 GLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELI 448 Query: 173 FLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232 LDEPTS LD + LL L+ GLS I+HDL + + C+RV V++ I+++ Sbjct: 449 LLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508 Query: 233 GTISDIVDS 241 G + + Sbjct: 509 GPTEAVFAN 517 >gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 130 bits (329), Expect = 3e-31 Identities = 66/239 (27%), Positives = 120/239 (50%), Gaps = 9/239 (3%) Query: 11 EKILSVRNLT-IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69 E ++ V+NL+ L ++NL+I +GE++ +IG SG GKS L+R + GL+ SGE Sbjct: 1 EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60 Query: 70 VKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEH-------LNLP 122 + G + KGK+ +G++FQ L ++V EN+ + + L Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120 Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 + + + VG+ + A LSGG +RV++ARAL P ++ DEP + LD Sbjct: 121 SKEDKAQALDALERVGI-LDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179 Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 P +A++ +L + G++V + H ++ +R+ ++ I+ +G S++ D Sbjct: 180 PESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDE 238 >gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]. Length = 268 Score = 129 bits (325), Expect = 1e-30 Identities = 68/240 (28%), Positives = 101/240 (42%), Gaps = 50/240 (20%) Query: 11 EKILSVRNLTIELNNR---------IILNNINLDILRGEILGVIGSSGTGKSILMRGILG 61 E +L V+NL ++ ++ I GE LG++G SG GKS L R ILG Sbjct: 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG 61 Query: 62 LIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL 121 L SGE+ G K+ L Sbjct: 62 LEEPTSGEILFEG-----------------------------------------KDITKL 80 Query: 122 PADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGL 181 + V + VGLP E P +LSGG +R+ +ARALA++P L+ DEP S L Sbjct: 81 SKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSAL 140 Query: 182 DPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 D + LL L+ LGL+ I+HDL+ + +R+AV+ I++ G ++ + Sbjct: 141 DVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 >gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.. Length = 180 Score = 128 bits (324), Expect = 1e-30 Identities = 71/219 (32%), Positives = 108/219 (49%), Gaps = 39/219 (17%) Query: 15 SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG 74 V NL++ R +L++++L I GEI+G++G +G GKS L++ + GL+ SGE+ + G Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60 Query: 75 EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKI 134 + L K+ + K+ + Q AL E L L A L + + Sbjct: 61 KDLASLSPKE---LARKIAYVPQ--AL---------------ELLGL-AHLADRPFNE-- 97 Query: 135 AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194 LSGG +RV LARALA +P +L LDEPTS LD E +LL Sbjct: 98 ----------------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141 Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 +L G +V M+ HDLN +RV +++ I+ +G Sbjct: 142 RLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 >gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 241 Score = 127 bits (322), Expect = 2e-30 Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 9/235 (3%) Query: 14 LSVRNLTIELNN-RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 + V NL+ N + L +++L I GE + +IG SG GKS L+R + GL+ SG V + Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE--HIV 130 G +N KGK ++G++FQ L ++V EN+ + L Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE 120 Query: 131 HTKIAI-----VGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 + A+ VGL + A QLSGG +RV++ARAL P L+ DEP + LDP + Sbjct: 121 EKQRALAALERVGL-LDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPAS 179 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 + + LL ++ G++V + H ++ +R+ ++ I+ +G +++ D Sbjct: 180 SRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD 234 >gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]. Length = 338 Score = 127 bits (321), Expect = 3e-30 Identities = 77/226 (34%), Positives = 115/226 (50%), Gaps = 9/226 (3%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L ++N+ + +L ++NLDI GE + ++G SG GKS L+R I GL SGE+ + Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILID 63 Query: 74 GEHLN-LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 G + L K+ A +FQ+ AL+ MTV ENI+ +K +P I+ V Sbjct: 64 GRDVTDLPPEKRGIAM------VFQNYALYPHMTVYENIAFGLK-LRGVPKAEIDKRVKE 116 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 ++GL N P QLSGG +RV+LARAL P + LDEP S LD Sbjct: 117 VAKLLGLEHL-LNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE 175 Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 + KL LG + +THD ++ +R+ V+ I + GT ++ Sbjct: 176 IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221 >gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]. Length = 223 Score = 125 bits (316), Expect = 1e-29 Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 4/207 (1%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83 R L +++ I +GE + + G SG GKS L++ I G G++ V G L+ KG+ Sbjct: 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGR 72 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143 + ++GV+FQ L TV EN+++P+ + P I V + +VGL Sbjct: 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPL-RVIGKPPREIRRRVSEVLDLVGLK-HK 130 Query: 144 ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLS 203 A +P QLSGG +RV++ARA+ P +L DEPT LDP + E +L ++ + LG + Sbjct: 131 ARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI-NRLGTT 189 Query: 204 VYMITHDLNNLISTCNRVAVIQKKGIM 230 V M THDL L++ + + G + Sbjct: 190 VLMATHDL-ELVNRMRHRVLALEDGRL 215 >gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 125 bits (316), Expect = 1e-29 Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 10/226 (4%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L V NL+ + L N++L++ RG+ ++G +G+GKS+L+ I G I SG++ + Sbjct: 1 LKVENLSKDWKE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59 Query: 74 GEHL-NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 G+ + NL K++ ++ + Q+ ALF MTV +NI+ +K + IE V Sbjct: 60 GKDITNLPPEKRDISY------VPQNYALFPHMTVYKNIAYGLK-KRKVDKKEIERKVLE 112 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 ++G+ N P LSGG +RV++ARAL ++P +L LDEP S LD E+ + Sbjct: 113 IAEMLGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE 171 Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 L K+R G++V +THD + ++VA++ +++ G ++ Sbjct: 172 LKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217 >gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 253 Score = 125 bits (316), Expect = 1e-29 Identities = 66/213 (30%), Positives = 121/213 (56%), Gaps = 15/213 (7%) Query: 8 SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI---LGLIP 64 + + + VR+L + ++ L +INLDI + ++ +IG SG GKS L+R + LIP Sbjct: 2 TMKIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP 61 Query: 65 --RVSGEVKVLGEHLNLAKGKQN-FAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL 121 RV GEV + G+ N+ K + ++G++FQ F M++ +N++ ++ H Sbjct: 62 GARVEGEVLLDGK--NIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK 118 Query: 122 PADLIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178 +L + IV + + L E + + LSGG +R+ +ARALA+ P++L +DEPT Sbjct: 119 DKEL-DEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177 Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 S LDPI+ + ++L+ +L+ ++ ++TH++ Sbjct: 178 SALDPISTLKIEELITELKKK--YTIVIVTHNM 208 >gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 125 bits (314), Expect = 2e-29 Identities = 68/206 (33%), Positives = 110/206 (53%), Gaps = 10/206 (4%) Query: 19 LTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLN 78 L+ E R L +++L I GE++ V+G SG GK+ L+ I G + G +++ Sbjct: 11 LSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQL------ 64 Query: 79 LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVG 138 G++ A+ GV+FQ+ AL + V +N++ ++ + I H +A+VG Sbjct: 65 --NGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLR-GIEKAQRREIAHQMLALVG 121 Query: 139 LPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198 L + +QLSGGM +RV +ARALA++P LL LDEP LD + E+ +LL+ L Sbjct: 122 LE-GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180 Query: 199 SLGLSVYMITHDLNNLISTCNRVAVI 224 G V +ITHD+ + R+ V+ Sbjct: 181 ETGKQVLLITHDIEEALFLATRLVVL 206 >gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.. Length = 213 Score = 123 bits (310), Expect = 6e-29 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 7/220 (3%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 + + N+T N L+++NLDI GE + ++G SG GK+ +R I GL SG + + Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 G + K + ++FQ+ AL+ MTV +NI+ +K +P D I+ V Sbjct: 61 GRDVTDLPPKDR-----DIAMVFQNYALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREV 114 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 ++ + + P QLSGG +RV+L RA+ +P + +DEP S LD + L Sbjct: 115 AELLQIE-HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL 173 Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 +L+ LG + +THD ++ +R+AV+ I + G Sbjct: 174 KRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 >gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.. Length = 232 Score = 122 bits (309), Expect = 6e-29 Identities = 70/239 (29%), Positives = 124/239 (51%), Gaps = 11/239 (4%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L NL+ R ++N ++L + +GEI+G++G +G GK+ I+GL+ SG++ + Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60 Query: 74 GEHLNLAKGKQNFAFSAKLGV--LFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131 G+ + K A+LG+ L Q ++F +TV+ENI + + E L E + Sbjct: 61 GQDIT----KLPMHKRARLGIGYLPQEASIFRKLTVEENI-LAVLEIRGLSKKEREEKLE 115 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 + + LSGG +RV +ARALA +P L LDEP +G+DPIA ++ K Sbjct: 116 ELLEEFHITH-LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQK 174 Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYF 250 ++ L+ G+ V + H++ +S +R +I + ++ EGT +I + +R + Sbjct: 175 IIKILKDR-GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA--ANELVRKVY 230 >gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]. Length = 501 Score = 122 bits (307), Expect = 1e-28 Identities = 63/218 (28%), Positives = 111/218 (50%), Gaps = 6/218 (2%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 E L +R +T + ++++L + +GEI ++G +G GKS LM+ + GL SGE+ Sbjct: 2 EPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI--SMPIKEHLNLPADLIEH 128 +V G+ + + + A +G++ QH L ++TV ENI + + + Sbjct: 62 RVDGKEVRIKSPRD--AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA 119 Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188 + GLP + + LS G +RV + +AL LL LDEPT+ L P A+E Sbjct: 120 RIKELSERYGLPVDPDAKVA-DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE 178 Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226 ++L +L G ++ ITH L +++ +RV V+++ Sbjct: 179 LFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVLRR 215 Score = 97.9 bits (244), Expect = 2e-21 Identities = 64/241 (26%), Positives = 116/241 (48%), Gaps = 18/241 (7%) Query: 11 EKILSVRNLTIELNNRII-LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69 E +L V +L+++ + + +++ ++ GEI+G+ G +G G+S L+ I GL SG Sbjct: 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGR 314 Query: 70 VKVLGEHLNLAKGKQNFAFSAKLGVLF------QHGALFSSMTVQENISM------PIKE 117 + + G+ G+ + +LG+ + HG L +++ EN+ + P Sbjct: 315 ILLNGKD---VLGRLSPRERRRLGLAYVPEDRHGHG-LVLDLSLAENLVLGRHDKKPFSR 370 Query: 118 HLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEP 177 L I I + + + LSGG +++ LAR LA PDLL +P Sbjct: 371 GGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQP 430 Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISD 237 T GLD A E + L++LR + G +V +I+ DL+ ++ +R+AVI + I+ + Sbjct: 431 TRGLDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 Query: 238 I 238 Sbjct: 490 A 490 >gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.. Length = 220 Score = 119 bits (301), Expect = 5e-28 Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 14/229 (6%) Query: 14 LSVRNLTIELNN--RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 L +RNLT + +++++L++ +GEI G++G +G GK+ ++ + G + SG Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM--PIKEHLNLPADLIEHI 129 + G + A LG Q ALF +TV+E++ +K LP I+ Sbjct: 61 INGYSIR----TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEE 113 Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189 V + ++GL + AN LSGGM +++SLA AL P +L LDEPTSGLDP + Sbjct: 114 VELLLRVLGLTDK-ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI 172 Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 L++++R G S+ + TH ++ + C+R+A++ + G+ ++ Sbjct: 173 WDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 >gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 237 Score = 119 bits (299), Expect = 1e-27 Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 12/243 (4%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 +L V NL+ L ++L++ RGEI+ ++G +G GK+ L++ I+GL+ SG + Sbjct: 1 APMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130 GE ++ + + + + +F +TV+EN+ + E Sbjct: 61 IFDGE--DITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY-----ARRDKEAQE 113 Query: 131 HTKIAIVGLPP---ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187 + L P E N LSGG + +++ARAL P LL LDEP+ GL P E Sbjct: 114 RDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 173 Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247 E + + +LR G+++ ++ + + +R V++ I+ GT +++ DP +R Sbjct: 174 EIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAEL--LADPDVR 231 Query: 248 SYF 250 + Sbjct: 232 EAY 234 >gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]. Length = 243 Score = 119 bits (299), Expect = 1e-27 Identities = 71/251 (28%), Positives = 126/251 (50%), Gaps = 31/251 (12%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 L NL R ++N+++L++ GEI+G++G +G GK+ I+GL+ SG++ + Sbjct: 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILL 63 Query: 73 LGEHLNLAKGKQNFAFSAKLGV--LFQHGALFSSMTVQENI---------SMPIKEHLNL 121 E + K A+LG+ L Q ++F +TV++NI + E Sbjct: 64 DDEDIT----KLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE 119 Query: 122 PADLIE--HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTS 179 L+E HI H + + + LSGG +RV +ARALA +P + LDEP + Sbjct: 120 LDALLEEFHITHLR-----------DSKAYSLSGGERRRVEIARALAANPKFILLDEPFA 168 Query: 180 GLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239 G+DPIA + +++ L+ G+ V + H++ + C+R +I ++ EG+ +IV Sbjct: 169 GVDPIAVIDIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227 Query: 240 DSNDPWIRSYF 250 N+ +R + Sbjct: 228 --NNEDVRRVY 236 >gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.. Length = 208 Score = 117 bits (295), Expect = 3e-27 Identities = 67/220 (30%), Positives = 121/220 (55%), Gaps = 12/220 (5%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L +LT + +L++I+L + +GEI G +G +G GK+ M+ ILGLI SGE+ Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD 60 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 G+ ++N ++G L + + ++T +EN+ + + + + + Sbjct: 61 GK-----SYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL-----GIRKKRIDEV 110 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 + +VGL ++A S GM +R+ +A AL +PDLL LDEPT+GLDP +E +L+ Sbjct: 111 LDVVGL-KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELI 169 Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 + LR G++V + +H L+ + +R+ +I K +++EG Sbjct: 170 LSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 >gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222 Score = 117 bits (295), Expect = 3e-27 Identities = 58/229 (25%), Positives = 112/229 (48%), Gaps = 10/229 (4%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L V NL IL ++L + GEI+ ++G +G GK+ L++ I+GL+P SG ++ Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60 Query: 74 GEHLNLAKGKQNFAFSAKLGVLF--QHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131 G + + A+ G+ + + +F +TV+EN+ + + + Sbjct: 61 GRDITGLPPHE----RARAGIGYVPEGRRIFPELTVEENLLLGAY---ARRRAKRKARLE 113 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 + E + LSGG + +++ARAL P LL LDEP+ GL P EE + Sbjct: 114 RVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173 Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 + +LR G+++ ++ + + +R V+++ ++ EGT ++++ Sbjct: 174 AIRELR-DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 >gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 228 Score = 116 bits (291), Expect = 8e-27 Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 8/216 (3%) Query: 10 EEKILSVRNLTIELNNRI----ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR 65 E I+ V +L+ + IL + L + RGE + ++G SG+GKS L+ + GL Sbjct: 3 AENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP 62 Query: 66 VSGEVKVLGEHLNLAKGKQNFAFSAK-LGVLFQHGALFSSMTVQENISMPIKEHLNLPAD 124 SGEV++LG+ L+ A A+ +G +FQ L ++T EN+++P+ E + Sbjct: 63 SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPL-ELRGESSA 121 Query: 125 LIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184 + VGL + P QLSGG +RV+LARA A PD+LF DEPT LD Sbjct: 122 DSRAGAKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180 Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNR 220 ++ LL L G ++ ++THD L + C+R Sbjct: 181 TGDKIADLLFALNRERGTTLVLVTHDP-QLAARCDR 215 >gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]. Length = 500 Score = 114 bits (287), Expect = 3e-26 Identities = 66/246 (26%), Positives = 113/246 (45%), Gaps = 24/246 (9%) Query: 7 PSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV 66 E +L VRNL+ + +++ + GEILG+ G G G++ L R + G P Sbjct: 257 EGIGEPVLEVRNLSG----GGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS 312 Query: 67 SGEVKVLGEHLNLAKGKQNFAFSAKLGVLF-----QHGALFSSMTVQENISMP----IKE 117 SGE+ + G+ + + + + K G+ + + L M++ ENI++ Sbjct: 313 SGEILLDGKPVRIR----SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSR 368 Query: 118 HLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEP 177 + + I + + + LSGG ++V LAR LA DP +L LDEP Sbjct: 369 RGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEP 428 Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISD 237 T G+D A E +L+ +L G ++ MI+ +L L+ +R+ V M+EG I Sbjct: 429 TRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILV------MREGRIVG 481 Query: 238 IVDSND 243 +D + Sbjct: 482 ELDREE 487 Score = 112 bits (282), Expect = 8e-26 Identities = 56/221 (25%), Positives = 109/221 (49%), Gaps = 7/221 (3%) Query: 7 PSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV 66 +L +R ++ L+ ++L + GE+ ++G +G GKS LM+ + G+ P Sbjct: 2 TMSTPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD 61 Query: 67 SGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM---PIKEHLNLPA 123 SGE+ + G+ + + + A +A + + Q +L +++V ENI + P + + Sbjct: 62 SGEILIDGKPVAFSSPRD--ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDR 119 Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183 + +A +GL + L+ LS + V +ARAL+ D +L LDEPT+ L Sbjct: 120 KAMRRRARELLARLGLDIDPDTLV-GDLSIAQRQMVEIARALSFDARVLILDEPTAALTV 178 Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224 E L+ +L+ G+++ I+H L+ + +R+ V+ Sbjct: 179 KETERLFDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVL 218 >gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1228 Score = 113 bits (284), Expect = 6e-26 Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 30/253 (11%) Query: 8 SQEEKILSVRNLTIELNN----------RIILNNINLDILRGEILGVIGSSGTGKSILMR 57 S+ ++LS IE N IL ++L I G+ + ++G SG+GKS L++ Sbjct: 338 SKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQ 397 Query: 58 GILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKE 117 + SGEV + GE + + +++G++ Q LF+ T++ENI Sbjct: 398 LLARFYDPTSGEVLIDGEDI---RNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRY---- 449 Query: 118 HLNLPADLIEHIVHTKIA-----IVGLPPETANLMPF---QLSGGMIKRVSLARALAIDP 169 A E K A I+ LP L+ QLSGG +R+++ARAL +P Sbjct: 450 -GKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNP 508 Query: 170 DLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGI 229 +L LDE TS LD + + L K S G + ++ H L + I +++AV+++ I Sbjct: 509 KILLLDEATSALDAESERVVQEALDKA--SKGRTTIVVAHRL-STIRNADKIAVMEEGKI 565 Query: 230 MKEGTISDIVDSN 242 +++GT +++ Sbjct: 566 VEQGTHDELIALG 578 Score = 85.3 bits (211), Expect = 2e-17 Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 28/222 (12%) Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR----VSGEVKVLGEHLNLA 80 + +LNN++L I G+ + ++G SG+GKS ++ L+ R +G+VK+ G + Sbjct: 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKST----VISLLERFYDPDAGKVKIDGVDI--- 1054 Query: 81 KGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA----- 135 K ++G++ Q LF+ T++ENI+ +E E I K+A Sbjct: 1055 KDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSEE-----VSEEEIIEAAKLANAHNF 1108 Query: 136 IVGLPP--ETANLMP-FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 I LP +T QLSGG +R+++ARA+ +P +L LDE TS LD + + Sbjct: 1109 ISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEA 1168 Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 L + G + +I H L + I + +AV++ ++++GT Sbjct: 1169 LDRAM--EGRTTIVIAHRL-STIQNADVIAVLKNGKVVEQGT 1207 >gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 113 bits (283), Expect = 7e-26 Identities = 63/223 (28%), Positives = 115/223 (51%), Gaps = 6/223 (2%) Query: 16 VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE 75 V NL + + + ++ + RGEI G++G +G GK+ ++ + L+ SG V G Sbjct: 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGH 62 Query: 76 HLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA 135 + ++ ++G++FQ ++ +T EN+ + + + +P + + Sbjct: 63 DVV----REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY-GVPGAERRERIDELLD 117 Query: 136 IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIK 195 VGL E A+ + SGGM +R+ +AR+L P++LFLDEPT GLDP + + K Sbjct: 118 FVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEK 176 Query: 196 LRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 L+ G+++ + TH + C+RVA+I I+ EGT ++ Sbjct: 177 LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 >gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.. Length = 214 Score = 112 bits (282), Expect = 8e-26 Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 3/203 (1%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83 N L+ IN+ I GE + ++G SG GKS L++ I SG ++V G+ ++ +G+ Sbjct: 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR 71 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143 K+GV+FQ L V EN++ + E +P I V + +VGL Sbjct: 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFAL-EVTGVPPREIRKRVPAALELVGL-SHK 129 Query: 144 ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLS 203 +P +LSGG +RV++ARA+ P +L DEPT LDP E LL K+ + G + Sbjct: 130 HRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI-NKAGTT 188 Query: 204 VYMITHDLNNLISTCNRVAVIQK 226 V + TH + +T +RV +++ Sbjct: 189 VVVATHAKELVDTTRHRVIALER 211 >gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]. Length = 231 Score = 112 bits (281), Expect = 1e-25 Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 9/213 (4%) Query: 33 NLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE-HLNLAKGKQNFAFSAK 91 +L + GEI+ ++G SG GKS L+ I G SGE+ + G H ++ + Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVS---- 74 Query: 92 LGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQL 151 +LFQ LF+ +TV +NI + + L L A+ E + A VGL L P +L Sbjct: 75 --MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAA-AAQVGLAGFLKRL-PGEL 130 Query: 152 SGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 SGG +RV+LAR L + +L LDEP S LDP E L+ +L +++ M+TH Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP 190 Query: 212 NNLISTCNRVAVIQKKGIMKEGTISDIVDSNDP 244 + +RV + I +G+ +++ Sbjct: 191 EDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223 >gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 182 Score = 111 bits (280), Expect = 2e-25 Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 54/230 (23%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 E +L VR L+++ + +++ ++ GEI+G+ G G G++ L + GL P SGE+ Sbjct: 2 EPVLEVRGLSVKGA----VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEI 57 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVLF-----QHGALFSSMTVQENISMPIKEHLNLPADL 125 + G+ + + + + G+ + + L ++V ENI++ Sbjct: 58 TLDGKPVTRRSPRD----AIRAGIAYVPEDRKREGLVLDLSVAENIALSS---------- 103 Query: 126 IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 LSGG ++V LAR LA DP +L LDEPT G+D A Sbjct: 104 ------------------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA 139 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235 E +L+ +L + G +V +I+ +L+ L+ C+R+ V M EG I Sbjct: 140 KAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILV------MYEGRI 182 >gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]. Length = 256 Score = 111 bits (278), Expect = 3e-25 Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 12/231 (5%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L V +L +L ++L G+++ +IGSSG+GKS +R I L +G ++V Sbjct: 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVN 66 Query: 74 GEHLNLAKGKQNFAFSA----------KLGVLFQHGALFSSMTVQENISMPIKEHLNLPA 123 GE + L + K A +LG++FQH L+S MTV EN+ L + Sbjct: 67 GEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSK 126 Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183 +A VG+ E A+ P LSGG +RV++ARALA++P+++ DEPTS LDP Sbjct: 127 AEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP 185 Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 E K++ L G ++ ++TH++ + V + + I +EG Sbjct: 186 ELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGP 235 >gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 157 Score = 110 bits (275), Expect = 6e-25 Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 57/212 (26%) Query: 15 SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG 74 + NL+ R L+N++L + GEI+ ++G +G+GKS L+R I GL+ SGE+ + G Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60 Query: 75 EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKI 134 + + A L + +I Sbjct: 61 KDI---------------------------------------------AKLPLEELRRRI 75 Query: 135 AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194 V QLSGG +RV+LARAL ++PDLL LDEPTSGLDP + E +LL Sbjct: 76 GYV-----------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124 Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226 +L G +V ++THD +RV V++ Sbjct: 125 ELAEE-GRTVIIVTHDPELAELAADRVIVLKD 155 >gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 214 Score = 109 bits (273), Expect = 1e-24 Identities = 71/211 (33%), Positives = 111/211 (52%), Gaps = 6/211 (2%) Query: 18 NLTIELNNRIILNNINLDI-LRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEH 76 L +++ R+ + +D L E+ G+ G+SG GKS L+R I GL G + + G Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTV 60 Query: 77 LNLAKGKQNFAFSA-KLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA 135 L ++ K N K+G++FQ ALF + V+EN++ +K N V + Sbjct: 61 LFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNRE---DRISVDELLD 117 Query: 136 IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIK 195 ++GL N P QLSGG +RV+LARALA P+LL LDEP S LD + L + Sbjct: 118 LLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176 Query: 196 LRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226 ++ +L + V +THDL+ +R+ V++ Sbjct: 177 IKKNLNIPVIFVTHDLSEAEYLADRIVVMED 207 >gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]. Length = 530 Score = 108 bits (271), Expect = 1e-24 Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 25/231 (10%) Query: 12 KILSVRNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 +L N++ R++L +++ I RG+ + ++G +G GKS L++ + G + +SG V Sbjct: 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130 KV GE + + Q+ L TV E +S D E V Sbjct: 380 KV-GETVKIGYFDQHRD------------ELDPDKTVLEELS-------EGFPDGDEQEV 419 Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190 + G E LSGG R+ LA+ L P+LL LDEPT+ LD + E + Sbjct: 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE 479 Query: 191 KLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 + L+ +V +++HD L R+ +++ K EG D ++ Sbjct: 480 EALLDFEG----TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQ 526 Score = 96.9 bits (241), Expect = 5e-21 Identities = 62/238 (26%), Positives = 103/238 (43%), Gaps = 49/238 (20%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 ++++ NL++ +R +L N++L + GE +G++G +G GKS L++ + G + SGEV Sbjct: 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL------- 125 ++G L Q L TV + + E L A+L Sbjct: 63 PK--------------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL 108 Query: 126 ----------------------IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLAR 163 +E + +G P E + LSGG +RV+LAR Sbjct: 109 ADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVS--SLSGGWRRRVALAR 166 Query: 164 ALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRV 221 AL +PDLL LDEPT+ LD + E + L + +V +++HD L + + Sbjct: 167 ALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG----TVIVVSHDRYFLDNVATHI 220 >gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 107 bits (270), Expect = 2e-24 Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 17/224 (7%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L + NLT + L+ ++L + G + G++G +G GK+ LMR + L P SG +++ Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHL----NLPADLIEHI 129 G+ + KQ ++G L Q ++ + TV+E + +++ +P+ ++ Sbjct: 60 GQDV----LKQPQKLRRRIGYLPQEFGVYPNFTVREFL-----DYIAWLKGIPSKEVKAR 110 Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189 V + +V L + A LSGGM +RV +A+AL DP +L +DEPT+GLDP F Sbjct: 111 VDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169 Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 LL +L V + TH + ++ S CN+VAV+ K ++ EG Sbjct: 170 RNLLSEL--GEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 >gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]. Length = 709 Score = 106 bits (267), Expect = 4e-24 Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 32/251 (12%) Query: 7 PSQEEKILSVRNLTIELNNR--IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP 64 + + + N++ +L +++L+I GE + ++G SG+GKS L++ +LGL Sbjct: 465 LPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 Query: 65 RVSGEVKVLG---EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL 121 G + + G ++LA ++ +G + Q LFS +++ENI+ L Sbjct: 525 PQQGRILLDGVDLNDIDLASLRRQ------VGYVLQDPFLFSG-SIRENIA------LGN 571 Query: 122 PADLIEHIVHTKIAIVGLPPETANL----------MPFQLSGGMIKRVSLARALAIDPDL 171 P E I+ + G NL LSGG +R++LARAL P + Sbjct: 572 PEATDEEIIE-AAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI 630 Query: 172 LFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMK 231 L LDE TS LDP + L+++ G +V +I H L + I + +R+ V+ + I++ Sbjct: 631 LLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRL-STIRSADRIIVLDQGKIVE 687 Query: 232 EGTISDIVDSN 242 +G+ +++ Sbjct: 688 QGSHEELLAQG 698 >gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 213 Score = 105 bits (262), Expect = 2e-23 Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 19/208 (9%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP---RVSGE 69 +L ++N+++ L +L N+N I +GEI+ ++G SG GKS L+ ++G + +GE Sbjct: 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61 Query: 70 VKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLI--- 126 + + + L++ Q ++G+LFQ LF ++V +N+ LPA L Sbjct: 62 LWLNEQRLDMLPAAQR-----QIGILFQDALLFPHLSVGQNLL------FALPATLKGNA 110 Query: 127 -EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 + + + GL + P LSGG RV+L RAL P L LDEP S LD Sbjct: 111 RRNAANAALERSGLD-GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVAL 169 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNN 213 ++F + + + G+ +THDL + Sbjct: 170 RDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 >gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 104 bits (261), Expect = 2e-23 Identities = 70/235 (29%), Positives = 109/235 (46%), Gaps = 14/235 (5%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 ++ NL+ L R +L+ ++LD+ GE+L ++G +G GKS L++ + G + SGEV + Sbjct: 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH--IV 130 G LN + + VL Q+ +L TVQE + M H + E I Sbjct: 61 NGVPLNSWPPE---ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPH-RSGREPEEDERIA 116 Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALA------IDPDLLFLDEPTSGLDPI 184 +A L LSGG +RV LAR LA LFLDEPTS LD Sbjct: 117 AQALAATDLSGLAGRDYR-TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIA 175 Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239 +L +L G +V + HDLN +R+ ++ + ++ G+ D++ Sbjct: 176 HQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 >gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 171 Score = 104 bits (262), Expect = 2e-23 Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 48/215 (22%) Query: 14 LSVRNLTIELNNRI--ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 + +N++ R +L +++L I GE + ++G SG+GKS L++ +L L SGE+ Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131 + G L + + + + Q LFS T++ENI Sbjct: 61 IDGVDLRDLDLE---SLRKNIAYVPQDPFLFS-GTIRENI-------------------- 96 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 LSGG +R+++ARAL DP +L LDE TS LDP + Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137 Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226 L L G +V +I H L+ + +R+ V+ Sbjct: 138 ALRALAK--GKTVIVIAHRLSTIRD-ADRIIVLDD 169 >gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 210 Score = 104 bits (261), Expect = 3e-23 Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 24/220 (10%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L V N+T L++I+ + +GEI G++G +G GK+ +R ILG+I SGEV Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI-------SMPIKEHLNLPADLI 126 G+ L++A ++G L + L+ M V + + + +E + + Sbjct: 61 GKPLDIAARN-------RIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWL 113 Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186 E + L E AN +LS G ++V A+ DP+LL LDEP SGLDP+ Sbjct: 114 ER--------LEL-SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNV 164 Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226 E ++ +L + G +V + TH + + C+RV ++ K Sbjct: 165 ELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNK 203 >gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 205 Score = 102 bits (256), Expect = 9e-23 Identities = 64/216 (29%), Positives = 114/216 (52%), Gaps = 13/216 (6%) Query: 15 SVRNLTIELN-NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 + N++ IL++++LD+ GEI+ + G +G GK+ L + + GLI SG + + Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 G+ + + +++ + + V +Q LF+ +V+E + + +KE L+ + E ++ Sbjct: 61 GKPIKAKERRKSIGYVMQ-DVDYQ---LFTD-SVREELLLGLKE-LDAGNEQAETVL-KD 113 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 + + L P LSGG +R+++A AL DLL DEPTSGLD E +L+ Sbjct: 114 LDLYAL----KERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169 Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGI 229 +L + G +V +ITHD L C+RV ++ I Sbjct: 170 RELA-AQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 >gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]. Length = 242 Score = 102 bits (254), Expect = 1e-22 Identities = 74/244 (30%), Positives = 121/244 (49%), Gaps = 11/244 (4%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI--PRVSGEVK 71 + + + L +I LD GE L ++G SG GKS L+R +L L+ PR SG + Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLR-VLNLLEMPR-SGTLN 60 Query: 72 VLGEHLNLAK---GKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128 + G H + +K K +G++FQ L+ +TVQEN+ L L D Sbjct: 61 IAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALA 120 Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP-IAAE 187 + + L P A+ P LSGG +RV++ARAL ++P +L DEPT+ LDP I A+ Sbjct: 121 RAEKLLKRLRLKP-YADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179 Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247 +IK G++ ++TH++ T +RV ++ I+++G S + + Sbjct: 180 IVS--IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFK 237 Query: 248 SYFN 251 +Y + Sbjct: 238 NYLS 241 >gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]. Length = 245 Score = 101 bits (254), Expect = 2e-22 Identities = 62/214 (28%), Positives = 113/214 (52%), Gaps = 15/214 (7%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 + +++ + GEI G++G +G GK+ L+R I L+ SG+V + + ++ + Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI--DGVDTVR--DPSFV 73 Query: 89 SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIV----GLPPETA 144 K+GVLF L++ +T +EN+ + + L + +IA + L E Sbjct: 74 RRKIGVLFGERGLYARLTARENLKYFARLN-----GLSRKEIKARIAELSKRLQLL-EYL 127 Query: 145 NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSV 204 + + S GM ++V++ARAL DP +L LDEPTSGLD +F + +L++ G +V Sbjct: 128 DRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE-GRAV 186 Query: 205 YMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 +H + + + C+RV V+ K ++ EG+I + Sbjct: 187 IFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220 >gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]. Length = 613 Score = 100 bits (251), Expect = 3e-22 Identities = 69/255 (27%), Positives = 122/255 (47%), Gaps = 22/255 (8%) Query: 1 MQLNNIPSQEEKILSVRNLTIELNN-----RIILNNINLDILRGEILGVIGSSGTGKSIL 55 + + +P E LS RNLT+ + IL ++ GE+L ++G SG+GK+ L Sbjct: 13 LSFSELPYLEPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTL 72 Query: 56 MRGILGLIPR---VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI- 111 + + G + +SGE+ + G + ++ + Q L ++TV+E + Sbjct: 73 LNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQ------QDDVLLPTLTVRETLR 126 Query: 112 -SMPIKEHLNLPADLIEHIVHTKIAIVGL----PPETANLMPFQLSGGMIKRVSLARALA 166 S ++ +L + V I+ +GL N LSGG KRVS+A L Sbjct: 127 FSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL 186 Query: 167 IDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLN-NLISTCNRVAVIQ 225 DP +LFLDEPTSGLD +A + +LL +L S G +V H + L +++ ++ Sbjct: 187 TDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLS 245 Query: 226 KKGIMKEGTISDIVD 240 + ++ G+ ++++ Sbjct: 246 EGEVVYSGSPRELLE 260 >gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 573 Score = 100 bits (250), Expect = 4e-22 Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 28/244 (11%) Query: 4 NNIPSQEEKILSVRNLTIEL--NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILG 61 + + + L +RN++ L N NL + +GE + ++G SG+GKS L++ + G Sbjct: 327 DEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386 Query: 62 LIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMP------- 114 G + + G + + A + VL Q LFS T+++N+ + Sbjct: 387 AWDPQQGSITLNGVEIASLDEQ---ALRETISVLTQRVHLFSG-TLRDNLRLANPDASDE 442 Query: 115 ----IKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPD 170 + + L L+E +G +LSGG +R++LARAL D Sbjct: 443 ELWAALQQVGL-EKLLESAPDGLNTWLGEGGR-------RLSGGERRRLALARALLHDAP 494 Query: 171 LLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIM 230 L LDEPT GLDPI + LL H+ G ++ M+TH L L +R+ V+ I+ Sbjct: 495 LWLLDEPTEGLDPITERQVLALL--FEHAEGKTLLMVTHRLRGL-ERMDRIIVLDNGKII 551 Query: 231 KEGT 234 +EGT Sbjct: 552 EEGT 555 >gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 300 Score = 99.6 bits (248), Expect = 7e-22 Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 24/238 (10%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L + +T ++ ++NI+ ++ GEI G++G +G GK+ R ILGL+ GE+ Sbjct: 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN 62 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI-------SMPIKEHLNLPADLI 126 G G + ++G L + L+ MTV++ + MP E + Sbjct: 63 G-------GPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWL 115 Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186 E ++ IVG + +LS G +++ A+ +P+LL LDEP SGLDP+ Sbjct: 116 E-----RLEIVGKKTKKIK----ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNV 166 Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDP 244 E + +L+ G ++ +H + ++ C+R+ +++K + GT+ DI S Sbjct: 167 ELLKDAIFELKEE-GATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK 223 >gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.. Length = 173 Score = 99.1 bits (247), Expect = 1e-21 Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 47/218 (21%) Query: 14 LSVRNLTIEL--NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 L V N++ +L N++ I GE L +IG SG+GKS L R ILGL+ SG V+ Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131 + G ++ + +G L Q LFS ++ ENI Sbjct: 61 LDGADISQWDPNE---LGDHVGYLPQDDELFSG-SIAENI-------------------- 96 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 LSGG +R+ LARAL +P +L LDEP S LD ++ Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137 Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGI 229 + L+ + G + +I H +++ +R+ V++ + Sbjct: 138 AIAALK-AAGATRIVIAHRP-ETLASADRILVLEDGRV 173 >gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 223 Score = 98.2 bits (244), Expect = 2e-21 Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 7/213 (3%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 +L ++ + + ILNNI+L + GE + + G SG GKS L++ + LI SG + Sbjct: 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLF 62 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 GE ++ K + A+ ++ Q ALF TV++N+ P + P Sbjct: 63 EGEDVSTLKPE---AYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRPD---RAAALD 115 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 +A LP +LSGG +R++L R L P +L LDE TS LD +++ Sbjct: 116 LLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175 Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQ 225 + + ++V ITHD + I ++V +Q Sbjct: 176 IHRYVREQNVAVLWITHDKDQAIRHADKVITLQ 208 >gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 163 Score = 97.8 bits (244), Expect = 2e-21 Identities = 58/211 (27%), Positives = 90/211 (42%), Gaps = 56/211 (26%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L +R +T L+ ++L + RGE+ ++G +G GKS LM+ + GL SGE+ V Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 G+ + P D Sbjct: 61 GK----------------------------------------EVSFASPRDARRA----G 76 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 IA+V +QLS G + V +ARALA + LL LDEPT+ L P E K++ Sbjct: 77 IAMV-----------YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVI 125 Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224 +LR + G++V I+H L+ + +RV V+ Sbjct: 126 RRLR-AQGVAVIFISHRLDEVFEIADRVTVL 155 >gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.. Length = 194 Score = 97.9 bits (244), Expect = 2e-21 Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 47/222 (21%) Query: 14 LSVRNLTIELNN------RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI--PR 65 LS RNLT+ + + + +L N++ GE+ ++G SG GKS L+ + G Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63 Query: 66 VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125 VSGEV + G L+ +F +G + Q L ++TV+E + Sbjct: 64 VSGEVLINGRPLDK------RSFRKIIGYVPQDDILHPTLTVRETLMF------------ 105 Query: 126 IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 A L LSGG KRVS+A L +P LLFLDEPTSGLD + Sbjct: 106 -----------------AAKLR--GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLI-STCNRVAVIQK 226 A + LL +L + G ++ H ++ I +++ ++ + Sbjct: 147 ALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQ 187 >gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]. Length = 249 Score = 97.6 bits (243), Expect = 3e-21 Identities = 64/254 (25%), Positives = 118/254 (46%), Gaps = 20/254 (7%) Query: 10 EEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69 IL + +++ LN+++ + GE+ +IG +G GK+ LM I G GE Sbjct: 2 NPIILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGE 61 Query: 70 VKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL-------- 121 V + +L K ++ A +G FQ +F ++TV+EN+ + + ++ Sbjct: 62 V-LFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL 120 Query: 122 ---PADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178 I+ + +A +GL E + + LS G + + + LA DP LL LDEP Sbjct: 121 RAEERRRIDEL----LATIGLGDE-RDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPV 175 Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 +G+ E+ +LL L S+ ++ HD+ + ++V V+ + ++ EG++ D Sbjct: 176 AGMTDAETEKTAELLKSLAGK--HSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL-DE 232 Query: 239 VDSNDPWIRSYFNR 252 V ++ I Y R Sbjct: 233 VQNDPKVIEVYLGR 246 >gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 95.8 bits (238), Expect = 1e-20 Identities = 64/247 (25%), Positives = 119/247 (48%), Gaps = 20/247 (8%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 + +LSV L+ +++ D+ GE+LG++G SG+GK+ L++ I G + +G V Sbjct: 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63 Query: 71 KVLG------EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQE--NI-----SMPIKE 117 + +++ ++ + G + Q+ M V NI ++ + Sbjct: 64 TYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH 123 Query: 118 HLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEP 177 + N+ A+ + + +I + + +P SGGM +R+ +AR L P L+F+DEP Sbjct: 124 YGNIRAEAQDWLEEVEI-----DLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEP 178 Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISD 237 T GLD LL L LGL+V ++THDL +R+ V+++ +++ G Sbjct: 179 TGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDR 238 Query: 238 IVDSNDP 244 ++D DP Sbjct: 239 VLD--DP 243 >gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.. Length = 236 Score = 94.9 bits (236), Expect = 2e-20 Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 33/219 (15%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L I+ I +GEI+G IG +G GK+ ++ + GL+ SGEV+V G L K+ F Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG----LVPWKRRKKF 92 Query: 89 SAKLGVLF-QHGALFSSMTVQENISMPIKEHLNLP-----------ADL--IEHIVHTKI 134 ++GV+F Q L+ + V ++ + + +LP ++L +E ++ T + Sbjct: 93 LRRIGVVFGQKTQLWWDLPVIDSFYL-LAAIYDLPPARFKKRLDELSELLDLEELLDTPV 151 Query: 135 AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194 QLS G R +A AL +P++LFLDEPT GLD +A E L Sbjct: 152 R--------------QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLK 197 Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 + G +V + +H + ++ + RV VI K ++ +G Sbjct: 198 EYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 >gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.. Length = 226 Score = 94.5 bits (235), Expect = 3e-20 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 15/180 (8%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP---RVSGEVKVLGEHLNLA 80 ILN+++L + G+++ ++GSSG+GK+ L+ I G + SG++ G+ Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77 Query: 81 KGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLP 140 + ++ A+ + Q L +TV+E ++ L LP + I ++ V L Sbjct: 78 QFQKCVAY------VRQDDILLPGLTVRE--TLTYTAILRLPRKSSDAIRKKRVEDVLLR 129 Query: 141 ----PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKL 196 + +SGG +RVS+A L DP +L LDEPTSGLD A L +L Sbjct: 130 DLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL 189 >gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.. Length = 237 Score = 94.2 bits (234), Expect = 3e-20 Identities = 70/230 (30%), Positives = 122/230 (53%), Gaps = 26/230 (11%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83 + +IL+NI+L I GE++G++G SG+GKS L + I +G V V G L LA Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPA 72 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH-TKIA-----IV 137 ++GV+ Q LF+ ++++NI+ L P +E ++ K+A I Sbjct: 73 ---WLRRQVGVVLQENVLFNR-SIRDNIA------LADPGMSMERVIEAAKLAGAHDFIS 122 Query: 138 GLPPETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194 LP ++ Q LSGG +R+++ARAL +P +L DE TS LD E + ++ Sbjct: 123 ELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD----YESEHAIM 178 Query: 195 KLRHSL--GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242 + H + G +V +I H L+ + +R+ V++K I+++G+ +++ N Sbjct: 179 RNMHDICAGRTVIIIAHRLST-VKNADRIIVMEKGRIVEQGSHDELLAEN 227 >gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 267 Score = 93.9 bits (233), Expect = 4e-20 Identities = 63/259 (24%), Positives = 129/259 (49%), Gaps = 21/259 (8%) Query: 11 EKILSVRNLTIELNNRIIL---------NNINLDILRGEILGVIGSSGTGKSILMRGILG 61 E +L VRNL+ R L ++ + G+ L +IG +G+GKS L + + G Sbjct: 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAG 61 Query: 62 LIPRVSGEVKVLGEHLNLAKGKQNFAFSAK-LGVLFQ--HGALFSSMTVQENISMPIKEH 118 +I SGE+ + L+ +++F +K + ++FQ + +L + + + + P++ + Sbjct: 62 MIEPTSGEILINDHPLHF----GDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN 117 Query: 119 LNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178 +L + + + +VGL P+ AN P L+ G +RV+LARAL + P ++ DE Sbjct: 118 TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEAL 177 Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 + LD + L+++L+ G+S +T + + ++V V+ + +++ G+ +D+ Sbjct: 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237 Query: 239 V-----DSNDPWIRSYFNR 252 + + I S+F Sbjct: 238 LASPLHELTKRLIESHFGE 256 >gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 559 Score = 93.3 bits (232), Expect = 6e-20 Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 25/216 (11%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL-NLAKGKQNFA 87 L+++NL I G++ ++G+SG GKS L+ +LG + GE++V G L +L+ A Sbjct: 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPE----A 392 Query: 88 FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147 + ++ + Q+ LF+ T++ENI + + + I + GL Sbjct: 393 WRKQISWVSQNPYLFAG-TIRENILL---ARPDASDEEIIAALDQ----AGLLEFVPKPD 444 Query: 148 PFQ---------LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198 LSGG +R++LARAL LL LDEPT+ LD + + L Sbjct: 445 GLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQAL--QEL 502 Query: 199 SLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 + +V +ITH L + +R+ V+ ++++GT Sbjct: 503 AKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGT 537 >gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 92.3 bits (229), Expect = 1e-19 Identities = 66/201 (32%), Positives = 99/201 (49%), Gaps = 7/201 (3%) Query: 33 NLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKL 92 +L +GEI ++G SG+GKS L+ I G SG V + G + A + Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADR-----PV 72 Query: 93 GVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLS 152 +LFQ LF+ +TV++N+ + + L L A+ + I +A VGL L P +LS Sbjct: 73 SMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAI-EVALARVGLAGLEKRL-PGELS 130 Query: 153 GGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLN 212 GG +RV+LAR L D +L LDEP + LDP E L++ L ++V M+TH Sbjct: 131 GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190 Query: 213 NLISTCNRVAVIQKKGIMKEG 233 + RV + I +G Sbjct: 191 DAKRLAQRVVFLDNGRIAAQG 211 >gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 263 Score = 91.1 bits (226), Expect = 3e-19 Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 18/234 (7%) Query: 13 ILSVRNLTIELNN-----RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67 ++S+ N T + LN ++L+I G+ + VIGS+G GKS L+ I G + S Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60 Query: 68 GEVKVLGEHLN-LAKGKQNFAFSAKLGVLFQHGA--LFSSMTVQENISMPI---KEHLNL 121 G++ + G + + K+ + L +FQ +T++EN+++ K+ Sbjct: 61 GQILIDGVDVTKKSVAKR----ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLS 116 Query: 122 PADLIEHIVHTKIAIVGLPPETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPT 178 A + + L N + + LSGG + +SL A P +L LDE T Sbjct: 117 SALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176 Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232 + LDP AE +L K+ L+ M+TH++ + + NR+ ++ I+ + Sbjct: 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 >gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 591 Score = 90.3 bits (224), Expect = 5e-19 Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 26/240 (10%) Query: 14 LSVRNLTIE-LNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 + ++ R +L ++ I +GE + ++GS+G+GKS ++R +L SG + + Sbjct: 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF-DYSGSILI 410 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI-----SMPIKEHLNLP----- 122 G+ + K + +GV+ Q LF+ T+ NI S +E + Sbjct: 411 DGQDI---KEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGL 466 Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 D+I + +VG E LSGG +RVSLARA D +L LDE TS LD Sbjct: 467 HDVISRLPDGYQTLVG---ERGL----MLSGGEKQRVSLARAFLKDAPILLLDEATSALD 519 Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242 E +++ + G +V MI H L +L+ +++ V+ + + GT S+++ + Sbjct: 520 SETEREILDMIMDV--MSGRTVIMIVHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLAPS 576 >gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 352 Score = 89.6 bits (222), Expect = 7e-19 Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 11/217 (5%) Query: 32 INLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLA-KGKQNFAFSA 90 N + I + G SG+GK+ L+ I GL G +++ G L A KG Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76 Query: 91 KLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQ 150 ++G +FQ LF TV+ N+ + + + D + +A++G+ + P Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQL-------VALLGIEH-LLDRYPGT 128 Query: 151 LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210 LSGG +RV++ RAL P+LL +DEP + LD E L +LR + + + ++H Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHS 188 Query: 211 LNNLISTCNRVAVIQKKGIMKEGTISDIVDSND--PW 245 L+ ++ +RV V++ + G + ++ S D PW Sbjct: 189 LDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPPW 225 >gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]. Length = 249 Score = 89.5 bits (222), Expect = 8e-19 Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 20/216 (9%) Query: 27 IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNF 86 L +I+ +I +GE +G+IG +G GKS L++ I G+ SG+VKV G+ Sbjct: 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK----------V 90 Query: 87 AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL 146 A +LG F +T +ENI + L L I+ V I L Sbjct: 91 APLIELGAGFDP-----ELTGRENIYL-RGLILGLTRKEIDEKVDEIIEFAEL--GDFID 142 Query: 147 MPFQ-LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205 P + S GM R++ + A ++PD+L LDE + D E+ + L +L ++ Sbjct: 143 QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIV 201 Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 +++HDL + C+R ++ I EG+ +++ + Sbjct: 202 LVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 >gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 209 Score = 89.2 bits (221), Expect = 9e-19 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 10/197 (5%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L NL+ E R + ++++ + GE L + G +G GK+ L+R + GL+ +GEV Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 GE + + + L L + + +T EN+ + H + A I + Sbjct: 63 GEPIQNVRES----YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQ- 117 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 VGL +L QLS G +RV+LAR L LDEP + LD L+ Sbjct: 118 ---VGL-AGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALM 173 Query: 194 IKLRHSLGLSVYMITHD 210 G+ V + TH Sbjct: 174 AAHAAQGGI-VLLTTHQ 189 >gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.. Length = 218 Score = 88.8 bits (220), Expect = 1e-18 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 ++ ++ + GE+ G++G +G GK+ +R + GL+ +G V G K+ Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG----FDVVKEPAEA 76 Query: 89 SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMP 148 +LG + L+ +T +EN+ + L D + + +G+ E + Sbjct: 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTARLEELADRLGME-ELLDRRV 134 Query: 149 FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208 S GM ++V++ARAL DP +L LDEPT+GLD +A + + +LR +LG + T Sbjct: 135 GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR-ALGKCILFST 193 Query: 209 HDLNNLISTCNRVAVIQKKGIMKEG 233 H + + C+RV V+ + ++ EG Sbjct: 194 HIMQEVERLCDRVVVLHRGRVVYEG 218 >gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 325 Score = 88.8 bits (220), Expect = 1e-18 Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 9/235 (3%) Query: 10 EEKILSVRNLTIELNNRII--LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67 E + N R I + +I+ +I +GEI+G +G++G GKS ++ + GL+ S Sbjct: 19 EPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS 78 Query: 68 GEVKVLGEHLNLAKGKQNFAFSAKLG-VLFQHGALFSSMTVQENISMPIKEHLNLPADLI 126 G+V+V G ++ + +G V+ Q L+ + +++ + +K +P D Sbjct: 79 GKVRVNG----KDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEV-LKLIYEIPDDEF 133 Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186 + I+ L + +LS G R LA AL P +LFLDEPT GLD A Sbjct: 134 AERLDFLTEILDLEGFLKWPVR-KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192 Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 + L + +V + TH +++ + C+RV +I + ++ +GT++ + + Sbjct: 193 ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 >gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]. Length = 257 Score = 88.4 bits (219), Expect = 2e-18 Identities = 57/233 (24%), Positives = 108/233 (46%), Gaps = 10/233 (4%) Query: 10 EEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69 E ++ ++N+++ N + IL +++ + GE ++G +G GK+ L+ + G P SG+ Sbjct: 28 NEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGD 87 Query: 70 VKVLGEHLNLAKGKQNFAFSAKLGVL--FQHGALFSSMTVQENISMPIKEHLNLPA---- 123 V +LG KG+ F ++G++ H TV++ + + + Sbjct: 88 VTLLGRR--FGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLT 145 Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183 + ++G A+ LS G +RV +ARAL DP+LL LDEP GLD Sbjct: 146 AEDLAAAQWLLELLGA-KHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDL 204 Query: 184 IAAEEFDKLLIKLRHSL-GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235 IA E+ L +L S ++ +TH + ++++ ++ +G + Sbjct: 205 IAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGKL 257 >gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]. Length = 567 Score = 88.6 bits (219), Expect = 2e-18 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 10/235 (4%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83 + +L +I+ I GE + ++G SG+GKS L++ +L L SGE+ + G + + Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDI---RDI 396 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPP-- 141 + ++G++ Q LFS T++ENI++ + + + + + I LP Sbjct: 397 SLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGY 455 Query: 142 -ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL 200 LSGG +R+++ARAL +P +L LDE TS LD L KL Sbjct: 456 DTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK-- 513 Query: 201 GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYFNRFTK 255 G + +I H L+ I +R+ V+ I++ GT +++ + R Y + Sbjct: 514 GRTTLIIAHRLST-IKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGGA 567 >gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains. Length = 119 Score = 88.1 bits (219), Expect = 2e-18 Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 8/127 (6%) Query: 53 SILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENIS 112 S L++ I GL+ SG + + GE ++ A ++GV+FQ LF +TV+EN+ Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRK--ALRKRIGVVFQDPQLFPELTVRENLF 58 Query: 113 MPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLL 172 +++ + + VGLP LSGG +RV++ARAL P LL Sbjct: 59 FGLRDKE------ADARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKLL 112 Query: 173 FLDEPTS 179 LDEPT+ Sbjct: 113 LLDEPTA 119 >gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]. Length = 580 Score = 87.2 bits (216), Expect = 4e-18 Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 39/243 (16%) Query: 11 EKILSVRNLTIELNN--RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68 + LSV LT + IL I+ + GE LG+IG SG+GKS L R ++G+ P SG Sbjct: 332 QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391 Query: 69 EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM--------PIKEHLN 120 V++ G L +Q +G L Q LF T+ ENI+ + E Sbjct: 392 SVRLDGADLRQWDREQ---LGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAAR 447 Query: 121 LPADLIEHIVH------TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFL 174 L A + E I+ T+I G LSGG +R++LARAL DP L+ L Sbjct: 448 L-AGVHELILRLPQGYDTRIGEGGAT----------LSGGQRQRIALARALYGDPFLVVL 496 Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 DEP S LD ++ + + G +V +I H + +++ +++ V +++G Sbjct: 497 DEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAHRP-SALASVDKILV------LQDGR 548 Query: 235 ISD 237 I+ Sbjct: 549 IAA 551 >gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism, General function prediction only]. Length = 885 Score = 87.4 bits (216), Expect = 4e-18 Identities = 57/219 (26%), Positives = 101/219 (46%), Gaps = 6/219 (2%) Query: 6 IPSQEEKILSVRNLTIELNNR-IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP 64 S L + NL+ + + ++ + GE G++G +G GK+ + + G Sbjct: 557 FRSSYSSALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK 616 Query: 65 RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPAD 124 SGE + G + ++ Q +LG Q AL+ +T +E++ LP Sbjct: 617 PTSGEALIKGHDITVSTDFQQV--RKQLGYCPQFDALWEELTGREHLEF-YARLRGLPRS 673 Query: 125 LIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184 I + + +VGL P + SGG +R+S A AL DP ++ LDEP++GLDP Sbjct: 674 DIGSAIEKLLRLVGLGPYANKQVRT-YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPK 732 Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAV 223 A ++ +LR + G ++ + +H + + C R A+ Sbjct: 733 ARRHLWDIIARLRKN-GKAIILTSHSMEEAEALCTRTAI 770 >gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.. Length = 238 Score = 86.7 bits (215), Expect = 5e-18 Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 34/230 (14%) Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR----VSGEVKVLGEH---L 77 + IL ++L I G+ + ++GSSG GKS ++ L+ R SGE+ + G L Sbjct: 15 DVPILKGLSLTIPPGKTVALVGSSGCGKST----VVSLLERFYDPTSGEILLDGVDIRDL 70 Query: 78 NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA-- 135 NL +++G++ Q LF T+ ENI A E K A Sbjct: 71 NLRW------LRSQIGLVSQEPVLFD-GTIAENIRYGKP-----DATDEEVEEAAKKANI 118 Query: 136 ---IVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189 I+ LP L+ QLSGG +R+++ARAL +P +L LDE TS LD + + Sbjct: 119 HDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178 Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239 + L + G + +I H L+ I + +AV+Q ++++GT +++ Sbjct: 179 QEALDRAM--KGRTTIVIAHRLST-IRNADLIAVLQNGQVVEQGTHDELM 225 >gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 252 Score = 86.4 bits (214), Expect = 6e-18 Identities = 58/230 (25%), Positives = 116/230 (50%), Gaps = 5/230 (2%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 ++++ N++ +++L++++LDI +G I +IG +G GKS L+ + L+ + SGE+ + Sbjct: 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM-PIKEHLNLPADLIEHIVH 131 G L K + KL +L Q + S +TV++ + I++ Sbjct: 61 DGLELTSTPSK---ELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIIN 117 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 I + L + + +LSGG +R +A LA D D + LDEP + LD + + K Sbjct: 118 EAIEYLHLEDLSDRYLD-ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176 Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 +L +L LG ++ ++ HD+N + + ++ ++K+G+ +I+ Sbjct: 177 ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 >gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 251 Score = 85.2 bits (211), Expect = 2e-17 Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 14/232 (6%) Query: 11 EKILSVRNLTIELNNRI-ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR---V 66 +L +++L +E+ + IL +NL + GE+ ++G +G+GKS L I+G P+ Sbjct: 1 MMMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVT 59 Query: 67 SGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLI 126 GE+ GE + + A + + FQ+ +T + + + L Sbjct: 60 EGEILFDGEDILELSPDERAR--AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILP 117 Query: 127 EHI--VHTKIAIVGLPPETANLMPFQ-LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183 E I + K ++GL E + SGG KR + + L ++P L LDEP SGLD Sbjct: 118 EFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI 177 Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITH--DLNNLISTCNRVAVIQKKGIMKEG 233 A + + + LR G V +ITH L + I ++V V+ I+K G Sbjct: 178 DALKIVAEGINALR-EEGRGVLIITHYQRLLDYI-KPDKVHVLYDGRIVKSG 227 >gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 236 Score = 83.7 bits (207), Expect = 4e-17 Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 26/229 (11%) Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ 84 R +L +++ I G+ + ++G SG+GKS ++R + SG + + G+ + + Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI---REVT 69 Query: 85 NFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETA 144 + +GV+ Q LF+ T+ NI + A E I K A + + Sbjct: 70 LDSLRRAIGVVPQDTVLFND-TIGYNI-----RYGRPDATDEEVIEAAKAAQIH---DKI 120 Query: 145 NLMPFQ-----------LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 P LSGG +RV++ARA+ +P +L LDE TS LD E L Sbjct: 121 MRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL 180 Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242 + S G + +I H L+ I +++ V++ I++ GT +++ Sbjct: 181 RDV--SKGRTTIVIAHRLST-IVNADKIIVLKDGRIVERGTHEELLAKG 226 >gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.. Length = 224 Score = 83.7 bits (207), Expect = 5e-17 Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 24/227 (10%) Query: 3 LNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL 62 S K L + E+ L +++ ++ RGE +G+IG +G GKS L+R + G+ Sbjct: 12 TYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71 Query: 63 IPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLP 122 P SG V V G S+ LG+ G +T +ENI + L L Sbjct: 72 YPPDSGTVTVRGR------------VSSLLGL---GGGFNPELTGRENIYL-NGRLLGLS 115 Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 I+ + I L + +L S GM R++ A A A++PD+L +DE + D Sbjct: 116 RKEIDEKIDEIIEFSEL-GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174 Query: 183 PIAAEEF-DKLLIKLRHSL--GLSVYMITHDLNNLISTCNRVAVIQK 226 F +K +LR L G +V +++HD +++ C+R V++K Sbjct: 175 ----AAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEK 217 >gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.. Length = 178 Score = 81.8 bits (202), Expect = 2e-16 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 46/222 (20%) Query: 14 LSVRNLTIEL--NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 LS+ N++ + +L N++L++ +GE + ++G SG+GKS L++ + G + GE+ Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131 + G ++ + A S+ + VL Q LF + T++ N+ Sbjct: 61 LDGVPVSDLEK----ALSSLISVLNQRPYLFDT-TLRNNLGR------------------ 97 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 + SGG +R++LAR L D ++ LDEPT GLDPI + Sbjct: 98 ------------------RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139 Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 L+ + ++ ITH L I +++ ++ I+ +G Sbjct: 140 LIFE--VLKDKTLIWITHHLTG-IEHMDKILFLENGKIIMQG 178 >gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.. Length = 220 Score = 81.0 bits (200), Expect = 3e-16 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 26/216 (12%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLAKGKQN 85 L+N++L I GE + +IG G+GKS L++ + GL SG V + G L+ A ++N Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 Query: 86 FAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA----IVGLPP 141 +G + Q LF T+++NI++ AD + ++A V P Sbjct: 80 ------IGYVPQDVTLFYG-TLRDNITLG-----APLADDERILRAAELAGVTDFVNKHP 127 Query: 142 ETANLM----PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197 +L LSGG + V+LARAL DP +L LDEPTS +D + E + L +L Sbjct: 128 NGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL 187 Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 ++ +ITH +L+ +R+ V+ I+ +G Sbjct: 188 G--DKTLIIITHRP-SLLDLVDRIIVMDSGRIVADG 220 >gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 716 Score = 80.8 bits (199), Expect = 3e-16 Identities = 61/220 (27%), Positives = 105/220 (47%), Gaps = 24/220 (10%) Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLAK 81 + +L N++ I GE++ ++G SG+GKS + +L SG + + G +N Sbjct: 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKY 539 Query: 82 GKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA---IVG 138 ++ + VLF S +++ENI+ + N + IE A I Sbjct: 540 LRRKIGLVGQEPVLF-------SGSIRENIAYGL---DNATDEEIEAAAKMANAHEFITN 589 Query: 139 LPPETANLM----PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194 P + N + QLSGG +R+++ARAL +P +L LDE TS LD + + L Sbjct: 590 FP-DGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALD 648 Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 +L G +V +I H L + + +++ VI K +++ GT Sbjct: 649 RLMQ--GRTVLVIAHRL-STVRHADQIVVIDKGRVVEMGT 685 >gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 234 Score = 80.6 bits (199), Expect = 4e-16 Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 24/225 (10%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV----SGEVKVLGEHLNLAKGK 83 +L +I+LDI GE + ++G SG+GKS L+ LIPR SG + + G + Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVN----LIPRFYDVDSGRILIDGHDVRDYTLA 72 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA---IVGLP 140 ++G++ Q LF+ TV ENI+ + +E A I+ LP Sbjct: 73 S---LRRQIGLVSQDVFLFND-TVAENIAY---GRPGATREEVEEAARAANAHEFIMELP 125 Query: 141 PETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197 ++ +LSGG +R+++ARAL DP +L LDE TS LD + L +L Sbjct: 126 EGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL- 184 Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242 + ++I H L+ I +R+ V++ I++ GT +++ Sbjct: 185 -MKNRTTFVIAHRLST-IENADRIVVLEDGKIVERGTHEELLAQG 227 >gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 204 Score = 79.7 bits (197), Expect = 6e-16 Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 47/231 (20%) Query: 14 LSVRNLTI-----ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68 +SV + + E L +INL++ +GE++ ++G G+GKS L+ +LG + ++SG Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60 Query: 69 EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI--SMPIKE--------- 117 V V G + A+ ++ + + T++ENI P E Sbjct: 61 SVSVPG----------SIAYVSQEPWIQ-------NGTIRENILFGKPFDEERYEKVIKA 103 Query: 118 -HLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176 L +++ T+I G+ LSGG +R+SLARA+ D D+ LD+ Sbjct: 104 CALEPDLEILPDGDLTEIGEKGI----------NLSGGQKQRISLARAVYSDADIYLLDD 153 Query: 177 PTSGLDP-IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226 P S +D + F+ ++ L + ++TH L L+ +++ V+ Sbjct: 154 PLSAVDAHVGRHIFENCILGLL-LNNKTRILVTHQL-QLLPHADQIVVLDN 202 >gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 330 Score = 79.7 bits (196), Expect = 8e-16 Identities = 57/239 (23%), Positives = 117/239 (48%), Gaps = 36/239 (15%) Query: 13 ILSVRNLTIEL---NNRI-ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP---R 65 +L +RNLTIE + ++ +++ + GEI G++G SG+GKS++ + I G+ R Sbjct: 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWR 62 Query: 66 VSGEVKVLG--EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPA 123 V+ + + L L+ ++ + ++FQ S + E + + + N+PA Sbjct: 63 VTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ--SCLDPSERVGRQLIQ--NIPA 118 Query: 124 DLIE---------------HIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARAL 165 + ++H ++ I + ++M P++L+ G ++V +A AL Sbjct: 119 WTYKGRWWQRFGWRKRRAIELLH-RVGI----KDHKDIMRSYPYELTEGECQKVMIAIAL 173 Query: 166 AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224 A P LL DEPT+ ++P + +LL +L + ++ +I+HDL + +++ V+ Sbjct: 174 ANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVL 232 >gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1381 Score = 79.5 bits (196), Expect = 9e-16 Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 39/228 (17%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L +IN +I +G+++ V+G G+GKS L+ ILG +P++SG V V G + A+ Sbjct: 537 LKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG----------SVAY 586 Query: 89 SAKLGVLFQHGALFSSMTVQENISM--PIKEHL--------NLPADLIEHIVHTKIAIVG 138 Q + + TV+ENI P E L DL E + + +G Sbjct: 587 VP------QQPWIQ-NGTVRENILFGSPYDEERYDKVIKACALKKDL-EILPFGDLTEIG 638 Query: 139 LPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP-IAAEEFDKLLIKLR 197 E LSGG +R+SLARA+ D D+ LD+P S +D + F++ + L Sbjct: 639 ---ERG----INLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL 691 Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPW 245 G +V ++TH L L +++ V++ I++ GT +++ S + Sbjct: 692 R--GKTVILVTHQLQFL-PHADQIIVLKDGKIVESGTYEELLKSGGDF 736 Score = 66.1 bits (161), Expect = 9e-12 Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 31/246 (12%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLA 80 N ++L I+ I GE +G++G +G GKS L+ + L+ GE+ + G + L Sbjct: 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLH 1210 Query: 81 KGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLP 140 + +L ++ Q LFS TV+ N+ P E+ + K + LP Sbjct: 1211 DLRS------RLSIIPQDPVLFSG-TVRFNLD-PFDEYSDDEIWEALERCQLKDVVSSLP 1262 Query: 141 --------PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 N S G + + LARAL +L LDE T+ +DP E D L Sbjct: 1263 GGLDSEVSEGGEN-----FSVGQRQLLCLARALLRKSKILVLDEATASVDP----ETDAL 1313 Query: 193 LIK-LRHSL-GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYF 250 + K +R +V I H LN ++ +RV V+ +++ + ++++ D S Sbjct: 1314 IQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLL 1372 Query: 251 NRFTKR 256 Sbjct: 1373 KEAALS 1378 >gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]. Length = 790 Score = 76.6 bits (188), Expect = 6e-15 Identities = 54/239 (22%), Positives = 105/239 (43%), Gaps = 21/239 (8%) Query: 14 LSVRNLTIELN-NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 + N+T + + +L++I+ + G+ + ++G SG GKS +MR + SG + + Sbjct: 538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITI 597 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 G+ + + + +GV+ Q LF+ T+ NI + A E Sbjct: 598 DGQDIRNV---TQSSLRSSIGVVPQDTVLFND-TILYNI-----RYAKPSASNEEVYAAA 648 Query: 133 KIA-----IVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184 K A I+ P + +LSGG +RV++AR + P ++ LDE TS LD Sbjct: 649 KAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTN 708 Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243 L +L + ++ H L+ +++ + + VI I++ G +++ + Sbjct: 709 TERAIQAALARL--CANRTTIVVAHRLSTIVNA-DLILVISNGRIVERGRHEELLKRDG 764 >gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 229 Score = 76.0 bits (187), Expect = 8e-15 Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 25/241 (10%) Query: 14 LSVRNLTIELNN-RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 + N+ + + +L +IN I GE + ++G +G GK+ L+ ++ G++ + Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM----PIKEHLNLPA----- 123 G + K + +GV+ Q LFS T+ ENI + E + A Sbjct: 63 DGIDIRDISRKS---LRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGA 118 Query: 124 -DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 D I + + ++G E LS G + +++ARA+ DP +L LDE TS +D Sbjct: 119 HDFIMKLPNGYDTVLG---ENGGN----LSQGERQLLAIARAMLRDPKILILDEATSNID 171 Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242 + + L KL G + +I H L+ I +++ V+ I++EGT +++ Sbjct: 172 TETEKLIQEALEKLMK--GRTSIIIAHRLST-IKNADKILVLDDGKIIEEGTHDELLAKK 228 Query: 243 D 243 Sbjct: 229 G 229 >gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.. Length = 200 Score = 74.7 bits (184), Expect = 2e-14 Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 43/225 (19%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR---VSGEV 70 L +++L + + + IL +NL I +GE+ ++G +G+GKS L + I+G P+ GE+ Sbjct: 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYEVTEGEI 59 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130 GE ++ + + FQ+ + + + ++N Sbjct: 60 LFKGE--DITDLPPEERARLGIFLAFQYPPEIPGVKNADFL-----RYVN---------- 102 Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190 G SGG KR + + L ++PDL LDEP SGLD A Sbjct: 103 ------EGF------------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVA 144 Query: 191 KLLIKLRHSLGLSVYMITH--DLNNLISTCNRVAVIQKKGIMKEG 233 +++ KLR G SV +ITH L + I +RV V+ I+K G Sbjct: 145 EVINKLR-EEGKSVLIITHYQRLLDYIKP-DRVHVLYDGRIVKSG 187 >gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]. Length = 248 Score = 73.5 bits (180), Expect = 6e-14 Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 23/220 (10%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L ++ ++ GEIL ++G +G GKS L+ + G+ SG ++ G+ L + Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATE---- 69 Query: 89 SAKLGVLFQHGALFSSMTVQENISMPIKEHLNL--PADLIEHIVHTKIAIVGLPPETANL 146 L +H A S +MP+ +L L P +++ + L + Sbjct: 70 ------LARHRAYLSQQQ-TPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGR- 121 Query: 147 MPFQLSGGMIKRVSLARA-LAIDPD------LLFLDEPTSGLDPIAAEEFDKLLIKLRHS 199 QLSGG +RV LA L I PD LL LDEP + LD D+LL L Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ 181 Query: 200 LGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239 GL++ M +HDLN+ + +R ++++ ++ G +++ Sbjct: 182 -GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220 >gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]. Length = 546 Score = 72.7 bits (178), Expect = 9e-14 Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 13/205 (6%) Query: 7 PSQEEKILSVRNLTIE-LNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR 65 + K L +RN+ +N + INL I RGE++ +IG +G+GKS L + GL Sbjct: 316 AFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP 375 Query: 66 VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125 SGE+ + G +Q + +F LF + E + P L Sbjct: 376 QSGEILLDG---KPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLE 432 Query: 126 IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 + H +LS G KR++L AL + D+L LDE + DP Sbjct: 433 LAHKTSLN---------DGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAF 483 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHD 210 EF ++L+ L G +++ I+HD Sbjct: 484 RREFYQVLLPLLKEQGKTIFAISHD 508 >gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism, Translation, ribosomal structure and biogenesis]. Length = 582 Score = 72.3 bits (177), Expect = 1e-13 Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 23/209 (11%) Query: 10 EEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69 + K + + N + +I+LN NL + RG G++G +G GKS L+R I +G+ Sbjct: 77 KSKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAI------ANGQ 130 Query: 70 VKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHI 129 V + A VL + E + L E I Sbjct: 131 VSGFHVEQEVRGDD----TEALQSVL--ESDTERLDFLAEEKELLAGLTL-------EEI 177 Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189 +A +G PE LSGG R++LARAL PDLL LDEPT+ LD +A Sbjct: 178 YDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWL 237 Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTC 218 + L + ++ +++HD N L + C Sbjct: 238 ENYL----QTWKITSLIVSHDRNFLNTVC 262 Score = 62.6 bits (152), Expect = 1e-10 Identities = 51/215 (23%), Positives = 78/215 (36%), Gaps = 24/215 (11%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83 + + LD + +G +G GKS L+ K+L L +G Sbjct: 375 SEYQWRKQLGLDRESDSRISRVGENGDGKSTLL--------------KILKGDLTPTRGI 420 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143 ++ QH F V + K + I + GL E Sbjct: 421 VGRHPRLRIKYFAQHHVDFLDKNVNA-VDFMEKSFPGKTEEEIRR----HLGSFGLSGEL 475 Query: 144 ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLS 203 A LSGG RV+ A +P LL LDEPT+ LD + L L++ G Sbjct: 476 ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLD---RDSLGALAKALKNFNG-G 531 Query: 204 VYMITHDLNNLISTCNRVAVIQKKGIMK-EGTISD 237 V +++HD + S C + V++ + EG I Sbjct: 532 VVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDK 566 >gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226 Score = 71.5 bits (175), Expect = 2e-13 Identities = 54/226 (23%), Positives = 110/226 (48%), Gaps = 13/226 (5%) Query: 7 PSQEEKILSVRNLTIELNNR---IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI 63 P + I+ +N+T R ++L +++ + GE+ ++G SG+GKS ++ + Sbjct: 5 PDHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64 Query: 64 PRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENIS--MPIKEHLNL 121 G+V + G+ ++ + K +K+ ++ Q LF+ ++Q+NI+ + + Sbjct: 65 QPQGGQVLLDGKPISQYEHKY---LHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECV 120 Query: 122 PADLIEHIVHTKIAIVGLPPET-ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180 + H+ I+ + +T QLSGG +RV++ARAL +P +L LDE TS Sbjct: 121 KEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSA 180 Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226 LD + ++ + L +V +I H L + + +++ V+ Sbjct: 181 LDAESEQQVQQALYDWPER--RTVLVIAHRL-STVERADQILVLDG 223 >gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 221 Score = 70.5 bits (173), Expect = 5e-13 Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 17/213 (7%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLAKGKQ 84 +L NI+ I GE +G++G +G+GKS L+ + L+ SG + + G + L + Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78 Query: 85 NFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPP--- 141 ++ ++ Q LFS T++ N+ P E+ + V K + LP Sbjct: 79 ------RISIIPQDPVLFSG-TIRSNLD-PFGEYSDEELWQALERVGLKEFVESLPGGLD 130 Query: 142 ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLG 201 LS G + + LARAL +L LDE T+ +DP K + + Sbjct: 131 TVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--D 188 Query: 202 LSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 +V I H L+ +I +R+ V+ K +++ + Sbjct: 189 CTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 >gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily) [General function prediction only]. Length = 614 Score = 70.4 bits (172), Expect = 5e-13 Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 29/251 (11%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 + + +L++ + ++ ++ L++ RG G+IG +G+GKS +R I G + Sbjct: 76 VKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIP------ 129 Query: 74 GEHLNLAKGKQNFAFS----AKLGVLF-----QHGALFSSMTVQE------NISMPIKEH 118 EH++ + S + V+ + + Q + + E Sbjct: 130 -EHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYER 188 Query: 119 LN-LPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEP 177 L+ + D E + +G E + LSGG R +LARAL PDLL LDEP Sbjct: 189 LDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEP 248 Query: 178 TSGLDPIAAEEFDKLLIKL-RHSLGLSVYMITHDLNNLISTC-NRVAVIQKKGIMKEGTI 235 T+ LD A ++ L K R L + ++H + L C N + + KK I EG Sbjct: 249 TNHLDLEAIVWLEEYLAKYDRIILVI----VSHSQDFLNGVCTNIIHLDNKKLIYYEGNY 304 Query: 236 SDIVDSNDPWI 246 V + Sbjct: 305 DQYVKTRSELE 315 Score = 68.1 bits (166), Expect = 2e-12 Identities = 53/210 (25%), Positives = 78/210 (37%), Gaps = 28/210 (13%) Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ 84 N +I +N I + ++G +G GKS L++ I G + G V H L + Q Sbjct: 402 NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMV-SRHSHNKLPRYNQ 460 Query: 85 NFAFSAKL--GVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPE 142 + A L L F E + + L D Sbjct: 461 HLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRF-GLTGD------------------ 501 Query: 143 TANLMPF-QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLG 201 A ++P QLS G +RV AR P LL LDEPT+ LD E D L + G Sbjct: 502 -AQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLD---IETIDALAEAINEFPG 557 Query: 202 LSVYMITHDLNNLISTCNRVAVIQKKGIMK 231 V +++HD + + V + + K Sbjct: 558 -GVVLVSHDFRLISQVAEEIWVCENGTVTK 586 >gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.. Length = 201 Score = 69.6 bits (170), Expect = 7e-13 Identities = 58/199 (29%), Positives = 89/199 (44%), Gaps = 12/199 (6%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L LT E + R + + ++ + GE L V G +G+GK+ L+R + GL P ++G V + Sbjct: 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLN 60 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 G L Q + + L L + ++++V EN+ AD + V Sbjct: 61 GGPL----DFQRDSIARGLLYLGHAPGIKTTLSVLENLRF-------WHADHSDEQVEEA 109 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 +A VGL + QLS G +RV+LAR L L LDEPT+ LD F + + Sbjct: 110 LARVGL-NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168 Query: 194 IKLRHSLGLSVYMITHDLN 212 G+ V DL Sbjct: 169 AGHCARGGMVVLTTHQDLG 187 >gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]. Length = 807 Score = 69.0 bits (168), Expect = 1e-12 Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 15/219 (6%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 + + N I +++ N +L I+ G G++G +G GK+ L++ I + + VL Sbjct: 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVL 324 Query: 74 -GEHLNLAKGKQNF-----AFSAKLGVLFQHGALFSSM-----TVQENISMPIKEHLNLP 122 E +A A +L +L + L S + T E + E + Sbjct: 325 LCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG 384 Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 AD E +A +G E + SGG RVSLARAL ++P LL LDEPT+ LD Sbjct: 385 ADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLD 444 Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRV 221 A D L + +L +++HD L S C + Sbjct: 445 LNAVIWLDNYLQGWKKTL----LIVSHDQGFLDSVCTDI 479 Score = 57.0 bits (137), Expect = 5e-09 Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 25/218 (11%) Query: 13 ILSVRNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 +L + ++T + + ++ I + ++G +G GKS L++ ++G + GE++ Sbjct: 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELR 645 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131 ++ L ++G QH ++ +E ++ NLP Sbjct: 646 ---KNHRL-----------RIGWFDQHAN--EALNGEETPVEYLQRKFNLP----YQEAR 685 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 ++ GL + LSGG RV+LA PD+L LDEPT+ LD E D Sbjct: 686 KQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD---IESIDA 742 Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGI 229 L + G V M++HD ++ T + V++ +GI Sbjct: 743 LAEAINEYNG-GVIMVSHDERLIVETDCNLWVVENQGI 779 >gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]. Length = 497 Score = 68.4 bits (167), Expect = 2e-12 Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 16/216 (7%) Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ 84 R ILN I+ I G+ + ++G SG GKS ++R + SG + + G+ + Q Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDV--TQ 332 Query: 85 NFAFSAKLGVLFQHGALFSSMTVQENISM--PIKEHLNLPADLIEHIVHTKIAIVGLPPE 142 A +G++ Q LF+ T+ NI P + A +H I + PE Sbjct: 333 QSLRRA-IGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL---PE 387 Query: 143 TANLM----PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198 + +LSGG +RV++AR + +P +L LDE TS LD + L ++ Sbjct: 388 GYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREV-- 445 Query: 199 SLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 S G + +I H L+ +I + + V+ I++ GT Sbjct: 446 SAGRTTLVIAHRLSTIIDA-DEIIVLDNGRIVERGT 480 >gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1391 Score = 68.0 bits (166), Expect = 3e-12 Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 32/227 (14%) Query: 3 LNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL 62 L NI S + + + IL +I+ I GE+ V+G G+GK+ L++ + G Sbjct: 105 LVNILSNPLESILRMLGKRKKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGK 164 Query: 63 IP---RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI-------- 111 + + SGE+ G L K+ A++++ V F +TV+E + Sbjct: 165 LDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE------LTVRETLDFAARCKG 218 Query: 112 ------SMPIKEHLNLPADLIEHIV---HTKIAIVGLPPETANLMPFQLSGGMIKRVSLA 162 + +E L D + I+ H +VG N M +SGG KRVS+ Sbjct: 219 PGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVG------NDMVRGVSGGERKRVSIG 272 Query: 163 RALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209 L +LF DE T GLD A + K L +L H G + + Sbjct: 273 EMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSIL 319 Score = 63.7 bits (155), Expect = 5e-11 Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 20/172 (11%) Query: 26 RIILNNINLDILRGEILGVIGSSGTGKSILM-----RGILGLIPRVSGEVKVLGEHLNLA 80 R +LNN++ G + ++G SG GK+ L+ R G I G++ + G Sbjct: 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYI---EGDILISG------ 854 Query: 81 KGKQNFAFSAKLGVLFQHGALFSSMTVQEN--ISMPIKEHLNLPADLIEHIVHTKIAIVG 138 K F+ G + Q +TV+E+ S ++ + + V I ++ Sbjct: 855 FPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLE 914 Query: 139 LPPETANLM--PFQ-LSGGMIKRVSLARALAIDPD-LLFLDEPTSGLDPIAA 186 L L+ P LS KR+++ L +P +LFLDEPTSGLD AA Sbjct: 915 LKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAA 966 >gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]. Length = 604 Score = 66.8 bits (163), Expect = 5e-12 Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 26/207 (12%) Query: 8 SQEEKILSVRNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV 66 + +++ NL++ + + +L+ +N ++ GE L + G SG GK+ L+R + GL P Sbjct: 387 DNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG 446 Query: 67 SGEVKVLGEHLNLAKGKQNFAFSAKLGVLF--QHGALFSSMTVQENISMPIKEHLNLPAD 124 SG + + + +LF Q T++E + P A+ Sbjct: 447 SGRISMPADS----------------ALLFLPQRP-YLPQGTLREALCYPNAAPDFSDAE 489 Query: 125 LIEHIVHTKIAIVGLPPETANLMPFQ--LSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 L+ V K+ + L + LSGG +R++ AR L P +FLDE TS LD Sbjct: 490 LVA--VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547 Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITH 209 + +LL +V + H Sbjct: 548 EETEDRLYQLLK--EELPDATVISVGH 572 >gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 64.2 bits (156), Expect = 3e-11 Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV--LGEHLNLAKGKQN 85 +L N++L + GE + + G SG+GKS L+R + G++ V GE ++L + Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85 Query: 86 FAFSAK---LGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPE 142 + +G + Q + ++ + ++ P+ +P ++ + + LP Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA-RGVPREVARAKAADLLTRLNLPER 144 Query: 143 TANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 +L P SGG +RV++AR +D +L LDEPT+ LD Sbjct: 145 LWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184 >gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 192 Score = 64.1 bits (156), Expect = 4e-11 Identities = 57/206 (27%), Positives = 87/206 (42%), Gaps = 51/206 (24%) Query: 13 ILSVRNLTIELN----NRIILNNINLDILRGEILGVIGSSGTGKSILM-----RGILGLI 63 +L+ +NL + R +LNNI+ + G + ++G SG GK+ L+ R G+I Sbjct: 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI 62 Query: 64 PRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPA 123 +GE+ + G +NF S G + Q ++TV+E + Sbjct: 63 ---TGEILINGR-----PLDKNFQRST--GYVEQQDVHSPNLTVREALRF---------- 102 Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183 +A L LS KR+++ LA P +LFLDEPTSGLD Sbjct: 103 -------------------SALLR--GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS 141 Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITH 209 AA + L KL S G ++ H Sbjct: 142 QAAYNIVRFLKKLADS-GQAILCTIH 166 >gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).. Length = 166 Score = 62.1 bits (151), Expect = 1e-10 Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 56/199 (28%) Query: 14 LSVRNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 + + NL++ + R++L +++ +I G+ L + G SGTGKS L R + GL P SG + + Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLF--QHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130 +LF Q T++E + P + Sbjct: 61 PEGE----------------DLLFLPQR-PYLPLGTLREQLIYPWDD------------- 90 Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190 LSGG +R++ AR L P +FLDE TS LD EE + Sbjct: 91 -------------------VLSGGEQQRLAFARLLLHKPKFVFLDEATSALD----EESE 127 Query: 191 KLLIKLRHSLGLSVYMITH 209 L +L LG++V + H Sbjct: 128 DRLYQLLKELGITVISVGH 146 >gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 282 Score = 61.9 bits (150), Expect = 1e-10 Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 24/197 (12%) Query: 4 NNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI 63 + S ++ L NL + +L NINL I +GE+L + GS+G+GK+ L+ ILG + Sbjct: 30 DRKHSSDDNNLFFSNLCLVGAP--VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 Query: 64 PRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPA 123 G++K G +FS++ + T++ENI + Sbjct: 88 EPSEGKIKHSGR----------ISFSSQF-------SWIMPGTIKENIIFGVSYDEYRYK 130 Query: 124 DLIEHIVHTKIAIVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180 +++ + I P + ++ LSGG R+SLARA+ D DL LD P Sbjct: 131 SVVK-ACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189 Query: 181 LDPIAAEE-FDKLLIKL 196 LD +E F+ + KL Sbjct: 190 LDVFTEKEIFESCVCKL 206 >gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 218 Score = 61.3 bits (148), Expect = 3e-10 Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 37/207 (17%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV-------KVLGEHLNLAK 81 L+NIN+ I G++ ++G G GKS L+ ILG + + G+V ++ Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 Query: 82 GKQNFAFSAKLGVLFQHGALFSSMTVQENISM--PIKEH----------LNLPADLIEHI 129 + + A++A+ L + TV+ENI+ P + L DL+ Sbjct: 77 NRYSVAYAAQKPWLL-------NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFG 129 Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD-PIAAEE 188 T+I G+ LSGG +R+ +ARAL + +++FLD+P S LD ++ Sbjct: 130 DQTEIGERGI----------NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHL 179 Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLI 215 + ++K ++ ++TH L L Sbjct: 180 MQEGILKFLQDDKRTLVLVTHKLQYLP 206 >gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]. Length = 593 Score = 58.1 bits (140), Expect = 2e-09 Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 25/211 (11%) Query: 5 NIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP 64 +P++ + IL + + R +L N+NL+I G+++ V+G SG GK+ L+R ILG Sbjct: 375 GLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG--- 431 Query: 65 RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLF--QHGALFSSMTVQENISMPIKEHLNLP 122 K GE + + L ++ F +T+ E++ + Sbjct: 432 ----AQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLR-------SKT 480 Query: 123 ADLIEHIVHTKIAIV---GLPPETANLMPF-QLSGGMIKRVSLARALAIDPDLLFLDEPT 178 D ++ + I+ GL F +LS G +R LA+ LA P++L +DE Sbjct: 481 GD-----LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFA 535 Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209 + LD + A + + +L G+++ ++TH Sbjct: 536 AHLDELTAVRVARKISELAREAGITLIVVTH 566 >gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 275 Score = 58.1 bits (140), Expect = 2e-09 Identities = 59/236 (25%), Positives = 114/236 (48%), Gaps = 22/236 (9%) Query: 14 LSVRNLTIELNN--RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 ++V++LT + +L NI+ I G+ +G++G +G+GKS L+ L L+ G+++ Sbjct: 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGDIQ 61 Query: 72 VLGEHLN---LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128 + G N L K ++ F GV+ Q +FS T ++N+ P + + + Sbjct: 62 IDGVSWNSVPLQKWRKAF------GVIPQKVFIFSG-TFRKNLD-PYGKWSDEEIWKVAE 113 Query: 129 IVHTKIAIVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 V K I P + ++ LS G + + LAR++ +L LDEP++ LDPI Sbjct: 114 EVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT 173 Query: 186 AEEFDKLLIKLRHSL-GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 + K L+ + +V + H + ++ C R VI++ + + +I +++ Sbjct: 174 YQVIRKT---LKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN 225 >gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism, General function prediction only]. Length = 659 Score = 58.0 bits (140), Expect = 3e-09 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 30/198 (15%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83 N +++ N++L++ G+ L + G SG GK+ L+R + GL P G++ + Sbjct: 446 NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD-------- 497 Query: 84 QNFAFSAKLGVLF-QHGALFSSMTVQENISMPIKEHLNLPA----DLIEHIVHTKIAIVG 138 K + F + T+++ + P+K + I I+ + + Sbjct: 498 ----GGPK-DLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILE-NVQLGH 551 Query: 139 LPPETANLMPFQ-------LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 L L LS G +R++ AR P LDE TS + E+ + Sbjct: 552 LLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVT----EDVEG 607 Query: 192 LLIKLRHSLGLSVYMITH 209 L + +G++ + H Sbjct: 608 ALYRKCREMGITFISVGH 625 >gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 202 Score = 57.5 bits (139), Expect = 3e-09 Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 47/213 (22%) Query: 1 MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL 60 + NI K + IL + + + GE++ V+G G+G S L++ + Sbjct: 4 LSWRNISFTTGK---------GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALA 54 Query: 61 GLIP---RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMP--- 114 V G++ G K + ++ S +E++ P Sbjct: 55 NRTEGNVSVEGDIHYNGIPYKEFAEK------------YPGEIIYVS---EEDVHFPTLT 99 Query: 115 IKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFL 174 ++E L+ N +SGG KRVS+A AL +L Sbjct: 100 VRETLDFALRC-----------------KGNEFVRGISGGERKRVSIAEALVSRASVLCW 142 Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207 D T GLD A E K + + L + ++ Sbjct: 143 DNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175 >gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.. Length = 144 Score = 56.2 bits (136), Expect = 8e-09 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 4/79 (5%) Query: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209 QLSGG R++LA+ L +P+LL LDEPT+ LD + E ++ L + +V +++H Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPG----TVILVSH 125 Query: 210 DLNNLISTCNRVAVIQKKG 228 D L ++ ++ Sbjct: 126 DRYFLDQVATKIIELEDGK 144 Score = 53.2 bits (128), Expect = 8e-08 Identities = 18/59 (30%), Positives = 34/59 (57%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 + + NL+ +++L +I+L I G+ +G++G +G GKS L++ I G + G V Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59 >gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated. Length = 252 Score = 56.2 bits (136), Expect = 9e-09 Identities = 70/240 (29%), Positives = 116/240 (48%), Gaps = 23/240 (9%) Query: 12 KILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR---VSG 68 IL ++NL +N IL +NL I +GEI ++G +G+GKS L + I G P + G Sbjct: 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH-PAYKILEG 64 Query: 69 EVKVLGEHLNLAKGKQNFAFSAKLGVL--FQHGALFSSMTVQENISMPIK---EHLNLP- 122 ++ GE + + ++ A LG+ FQ+ ++ + + + + LP Sbjct: 65 DILFKGESILDLEPEER----AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPE 120 Query: 123 ADLIE--HIVHTKIAIVGLPPE--TANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178 D +E I++ K+ +VG+ P + N+ SGG KR + + +D +L LDE Sbjct: 121 LDPLEFLEIINEKLKLVGMDPSFLSRNVNE-GFSGGEKKRNEILQMALLDSELAILDETD 179 Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITH--DLNNLISTCNRVAVIQKKGIMKEGTIS 236 SGLD A + + + KL S S+ +ITH L + I + V V+Q I+K G Sbjct: 180 SGLDIDALKIIAEGINKLMTS-ENSIILITHYQRLLDYIKP-DYVHVMQNGKIIKTGDAE 237 >gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]. Length = 591 Score = 55.6 bits (134), Expect = 1e-08 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 23/148 (15%) Query: 35 DILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGV 94 +I GE++G++G +G GK+ ++ + G+I G + L ++ + + + Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLL 422 Query: 95 LFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGG 154 + F S + I P LNL DL+E V LSGG Sbjct: 423 RSAIRSAFGSSYFKTEIVKP----LNLE-DLLERPVDE------------------LSGG 459 Query: 155 MIKRVSLARALAIDPDLLFLDEPTSGLD 182 ++RV++A AL+ + DL LDEP++ LD Sbjct: 460 ELQRVAIAAALSREADLYLLDEPSAYLD 487 Score = 42.1 bits (99), Expect = 2e-04 Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 48/200 (24%) Query: 12 KILSVRNLTIELNNRII----LNNINLDIL----RGEILGVIGSSGTGKSILMRGILGLI 63 +S+ NL EL ++ +N L L G+++G++G +G GKS ++ IL Sbjct: 65 DAISIVNLPEELEEEVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALK-IL--- 120 Query: 64 PRVSGEVKV-LGEH---------LNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQ--ENI 111 +GE+K LG + + +G + + KL G L + Q + I Sbjct: 121 ---AGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL----YEGELRAVHKPQYVDLI 173 Query: 112 SMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPF---------QLSGGMIKRVSLA 162 +K + +L++ K+ G E + +LSGG ++RV++A Sbjct: 174 PKVVKGKVG---ELLK-----KVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIA 225 Query: 163 RALAIDPDLLFLDEPTSGLD 182 AL D D+ F DEP+S LD Sbjct: 226 AALLRDADVYFFDEPSSYLD 245 >gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246 Score = 49.5 bits (118), Expect = 9e-07 Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 27/151 (17%) Query: 35 DILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGV 94 I E++G++G +G GK+ ++ + G++ G++++ + ++ Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKP------------- 67 Query: 95 LFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQ---L 151 Q+ TV++ +S K+ P E + P + ++ + L Sbjct: 68 --QYIKADYEGTVRDLLSSITKDFYTHPYFKTE---------IAKPLQIEQILDREVPEL 116 Query: 152 SGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 SGG ++RV++A L+ D D+ LDEP++ LD Sbjct: 117 SGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 >gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.. Length = 207 Score = 46.4 bits (110), Expect = 8e-06 Identities = 47/201 (23%), Positives = 92/201 (45%), Gaps = 27/201 (13%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87 +L N++ + GE +G++G +G GKS L+ + + G++++ G ++ + Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLE---D 79 Query: 88 FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147 + L ++ Q LFS T++ N+ P E+ + ++ + +++ GL Sbjct: 80 LRSSLTIIPQDPTLFSG-TIRSNLD-PFDEYSD--EEIYGAL---RVSEGGL-------- 124 Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL--GLSVY 205 LS G + + LARAL P +L LDE T+ +D D L+ K ++ Sbjct: 125 --NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT----DALIQKTIREEFTNSTIL 178 Query: 206 MITHDLNNLISTCNRVAVIQK 226 I H L +I +++ V+ Sbjct: 179 TIAHRLRTIID-YDKILVMDA 198 >gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261 Score = 43.3 bits (102), Expect = 6e-05 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 52/252 (20%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L NI++DI G + V G SG+GKS L+ L P ++ + + E + Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLY--PALARRLHLKKEQPGNHDRIEGLEH 68 Query: 89 SAKLGVLFQ-----------------------------HGALFSSMTVQ-----ENIS-- 112 K+ V+ Q G ++ T++ ++I+ Sbjct: 69 IDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADV 128 Query: 113 --MPIKEHLNLPADL--IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARAL--- 165 M ++E L ++ I + T + VGL LSGG +R+ LA+ L Sbjct: 129 LDMTVEEALEFFENIPKIARKLQT-LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKR 187 Query: 166 AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH--SLGLSVYMITHDLNNLISTCNRVAV 223 + L LDEPT+GL + KLL L+ G +V +I H+L ++I + + Sbjct: 188 STGKTLYILDEPTTGLHF---HDVKKLLEVLQRLVDKGNTVVVIEHNL-DVIKCADWIID 243 Query: 224 IQKKGIMKEGTI 235 + +G G + Sbjct: 244 LGPEGGDGGGQV 255 >gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]. Length = 935 Score = 42.9 bits (101), Expect = 9e-05 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 15/116 (12%) Query: 151 LSGGMIKRVSLARAL---AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207 LSGG +RV LA+ L + L LDEPT+GL ++ ++L +L G +V +I Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVI 881 Query: 208 THDLNNLISTCNRVAVIQKKG------IMKEGTISDIVDSNDPWIRSYFNRFTKRI 257 H+L ++I T + + + +G I+ GT ++ SY ++ K+ Sbjct: 882 EHNL-DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKV----KASYTGKYLKKY 932 Score = 38.2 bits (89), Expect = 0.002 Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 25/161 (15%) Query: 106 TVQENISMPIKEHLNLPADLIEHIVHTKIAI---------------VGLPPETANLMPFQ 150 + E M I + L +L KIA VGL T + Sbjct: 422 NIAEISEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGT 481 Query: 151 LSGGMIKRVSLARAL--AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208 LSGG +R+ LA + + L LDEP+ GL E + L +LR LG +V ++ Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVVE 540 Query: 209 HDLNNLISTCNRVAVIQKKG------IMKEGTISDIVDSND 243 HD + I + + I I+ EGT +++ + + Sbjct: 541 HDE-DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPE 580 Score = 33.6 bits (77), Expect = 0.055 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 9/63 (14%) Query: 19 LTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLN 78 L ++ R L NI+++I G V G SG+GKS L+ L V L HLN Sbjct: 607 LELKGARRNNLKNIDVEIPLGVFTCVTGVSGSGKSTLINDTL---------VPALARHLN 657 Query: 79 LAK 81 K Sbjct: 658 GTK 660 Score = 31.7 bits (72), Expect = 0.22 Identities = 13/27 (48%), Positives = 20/27 (74%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSIL 55 L NI+L+I R +++ + G SG+GKS L Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42 >gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 177 Score = 41.5 bits (97), Expect = 3e-04 Identities = 21/76 (27%), Positives = 37/76 (48%) Query: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209 LSGG ++RV++A AL + DEP++ LD + + +L + ++ H Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130 Query: 210 DLNNLISTCNRVAVIQ 225 DL L +R+ V + Sbjct: 131 DLAVLDYLSDRIHVFE 146 Score = 30.3 bits (68), Expect = 0.49 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%) Query: 35 DILRGEILGVIGSSGTGKSILMRGILG-LIP 64 + GE++G++G +GTGK+ ++ + G LIP Sbjct: 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIP 51 >gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 255 Score = 41.0 bits (96), Expect = 3e-04 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209 QLSGG ++RV++A ALA D D F DEP+S LD I LI+ V ++ H Sbjct: 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLD-IKQRLNAARLIRELAEDDNYVLVVEH 197 Query: 210 DL 211 DL Sbjct: 198 DL 199 Score = 26.4 bits (58), Expect = 8.0 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Query: 39 GEILGVIGSSGTGKSILMRGILG-LIP 64 G++LG++G +G GKS ++ + G L P Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKP 52 >gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]. Length = 908 Score = 40.0 bits (93), Expect = 6e-04 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 13/71 (18%) Query: 150 QLSGGMIKRVSLARALAI--------DPDLLFLDEPTSGLDPIAAEEFDKLLIKLR--HS 199 LSGG SLA LA+ +LLFLDEP LD E +KL L S Sbjct: 815 TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDE---ERLEKLAEILEELLS 871 Query: 200 LGLSVYMITHD 210 G + +I+H Sbjct: 872 DGRQIIIISHV 882 >gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA processing and modification]. Length = 592 Score = 39.9 bits (93), Expect = 7e-04 Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 24/187 (12%) Query: 40 EILGVIGSSGTGKSILMRGILGLI-PRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH 98 EI+ ++G +GTGK+ +R + G + P GE+ LN++ Q S K + Sbjct: 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIP----VLNVSYKPQ--KISPKREGTVRQ 421 Query: 99 GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKR 158 L + + + P IE+I+ ++ LSGG ++R Sbjct: 422 --LLHTKIRDAYMHPQFVNDVMKPL-QIENIIDQEVQ--------------GLSGGELQR 464 Query: 159 VSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTC 218 V+LA L D+ +DEP++ LD K++ + + +++ HD Sbjct: 465 VALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLA 524 Query: 219 NRVAVIQ 225 +RV V + Sbjct: 525 DRVIVFE 531 Score = 32.2 bits (73), Expect = 0.13 Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 43/222 (19%) Query: 17 RNLTIELNNRIILNNINLDILR----GEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 NL E +R N+ L L G++LG++G++G GKS ++ IL +G+ K Sbjct: 74 TNLEKETTHRYSANSFKLHRLPIPRPGQVLGLVGTNGIGKSTALK-IL------AGKQKP 126 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMT--VQENISMPIKEHLNLPADLIEHIV 130 NL + + L F+ L + T +++N+ IK D I V Sbjct: 127 -----NLGRYDNPPDWQEILT-YFRGSELQNYFTKILEDNLKAIIKPQY---VDQIPRAV 177 Query: 131 HTKIA-IVGLPPETANLMPF---------------QLSGGMIKRVSLARALAIDPDLLFL 174 + ++ E N QLSGG ++R ++A D+ Sbjct: 178 KGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMF 237 Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT--HDLNNL 214 DEP+S LD ++ K I +R + Y+I HDL+ L Sbjct: 238 DEPSSYLD---VKQRLKAAITIRSLINPDRYIIVVEHDLSVL 276 >gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204 Score = 39.4 bits (92), Expect = 9e-04 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%) Query: 146 LMPFQLSGG------MIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE-FDKLLIKLRH 198 M + SGG +I R++LA + +L LDEPT+ LD EE +++ + + Sbjct: 111 DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS 170 Query: 199 SLGLSVYMITHD 210 + +ITHD Sbjct: 171 QKNFQLIVITHD 182 >gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 176 Score = 39.1 bits (91), Expect = 0.001 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Query: 151 LSGGMIKRVSLARALA--IDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208 LSGG ++RV LA L L LDEP++GL + +++ L LG +V +I Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI-DLGNTVILIE 146 Query: 209 HDL 211 H+L Sbjct: 147 HNL 149 >gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 226 Score = 37.5 bits (87), Expect = 0.003 Identities = 52/216 (24%), Positives = 82/216 (37%), Gaps = 62/216 (28%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSIL--------------------------------M 56 L N+++DI R +++ + G SG+GKS L + Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDV 70 Query: 57 RGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIK 116 I GL P ++ + K + G + L +LF + I+ Sbjct: 71 DSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYD-YLRLLFAR--------------VGIR 115 Query: 117 EHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPD--LLFL 174 E L L++ VGL T + LSGG +R+ LA + L L Sbjct: 116 ERLGF---LVD---------VGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL 163 Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210 DEP+ GL P + + L +LR LG +V ++ HD Sbjct: 164 DEPSIGLHPRDNDRLIETLKRLR-DLGNTVLVVEHD 198 >gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]. Length = 728 Score = 37.3 bits (86), Expect = 0.004 Identities = 45/194 (23%), Positives = 72/194 (37%), Gaps = 27/194 (13%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83 +++ + I G L + G +G GKS L R + GL P V L++ + Sbjct: 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-------VYNGLLSIPRPN 545 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMP-----IKEHLNLPADLIE--HIVHTK-IA 135 F + S T+++ I P +K DL IVH + I Sbjct: 546 NIFYIPQR--------PYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHIL 597 Query: 136 IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIK 195 + LSGG +R+ +AR P LDE TS + + + + + Sbjct: 598 QREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSI----DVEGKIFQ 653 Query: 196 LRHSLGLSVYMITH 209 G+S+ ITH Sbjct: 654 AAKDAGISLLSITH 667 >gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.. Length = 162 Score = 35.7 bits (82), Expect = 0.012 Identities = 31/137 (22%), Positives = 40/137 (29%), Gaps = 33/137 (24%) Query: 82 GKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPP 141 GK + L + A V+ IV Sbjct: 33 GKSTILDAIGLALGGAQSATRRRSGVKAGC------------------------IVAAVS 68 Query: 142 ETANLMPFQLSGGMIKRVSLARALAI----DPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197 QLSGG + +LA LA+ L LDE GLDP + L + Sbjct: 69 AELIFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDP---RDGQALAEAIL 125 Query: 198 HSL--GLSVYMITHDLN 212 L G V +ITH Sbjct: 126 EHLVKGAQVIVITHLPE 142 >gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.. Length = 213 Score = 34.4 bits (79), Expect = 0.033 Identities = 43/186 (23%), Positives = 64/186 (34%), Gaps = 37/186 (19%) Query: 40 EILGVIGSSGTGKSILMRGI-LGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH 98 + + G +G GKS ++ I L + + A G+ +A++ FQ Sbjct: 29 GLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGED----TAEVSFTFQL 84 Query: 99 GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPP-ETANLMPFQ---LSGG 154 G ++ L D IV LP E + LSGG Sbjct: 85 G----------GKKYRVERSRGLDYD-------QFTRIVLLPQGEFDRFLARPVSTLSGG 127 Query: 155 MIKRVSLARALA----------IDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSV 204 SL+ ALA + LF+DE LDP A E L +R + V Sbjct: 128 ETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIR-TENRMV 186 Query: 205 YMITHD 210 +I+H Sbjct: 187 GVISHV 192 >gnl|CDD|30199 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.. Length = 273 Score = 34.5 bits (79), Expect = 0.034 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 15/111 (13%) Query: 41 ILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL---GEHLNLAKGKQNFAFSA------K 91 I+GV G SG GKS +R + L S V V+ H KG++ +A Sbjct: 1 IIGVAGDSGCGKSTFLRRLTSLF--GSDLVTVICLDDYHSLDRKGRKETGITALDPRANN 58 Query: 92 LGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIV-GLPP 141 ++++ ++ + I PI H+ D E I TKI ++ GL P Sbjct: 59 FDLMYEQ---LKALKEGQAIEKPIYNHVTGLIDPPELIKPTKIVVIEGLHP 106 >gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only, Transcription]. Length = 291 Score = 33.4 bits (76), Expect = 0.064 Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 42/248 (16%) Query: 16 VRNLTIELNNRI--------ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67 V + IE++ I + NLD+ G ++G++G GK+ L++ + G Sbjct: 9 VSDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG 68 Query: 68 GEVKVLGE---HLNLAKGKQNFAFSAKLGVLFQHGALFS-SMTVQENISMPIKEHLNLPA 123 G V+VLG H + + ++ LG + + + +Q +IS Sbjct: 69 GVVQVLGRSAFHDTSLESSGDLSY---LGGEWSKTVGIAGEVPLQGDIS----------- 114 Query: 124 DLIEHIVHTKIAIVGLPPETANLM-----------PFQLSGGMIKRVSLARALAIDPDLL 172 EH++ + G PE + ++S G +RV + L +L Sbjct: 115 --AEHMI---FGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVL 169 Query: 173 FLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232 LDE T LD +A + + L + G ++ TH + L + + I+ ++ Sbjct: 170 LLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDN 229 Query: 233 GTISDIVD 240 I + Sbjct: 230 LKYQKIKE 237 >gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 257 Score = 33.1 bits (75), Expect = 0.079 Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 10/174 (5%) Query: 14 LSVRNLTIELNNRI--ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 + + +L + N + +L ++ I G+ +G+ G +G+GKS L ++ G++ Sbjct: 20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV 79 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131 + G ++++K + ++L ++ Q LFS +++ N+ K + + +E I Sbjct: 80 IDG--IDISKLPLH-TLRSRLSIILQDPILFSG-SIRFNLDPECKCTDDRLWEALE-IAQ 134 Query: 132 TKIAIVGLPPETANLMPF---QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 K + LP ++ S G + LARA +L +DE T+ +D Sbjct: 135 LKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASID 188 >gnl|CDD|33262 COG3459, COG3459, Cellobiose phosphorylase [Carbohydrate transport and metabolism]. Length = 1056 Score = 32.2 bits (73), Expect = 0.13 Identities = 9/36 (25%), Positives = 16/36 (44%) Query: 66 VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGAL 101 +G+ +L E + G FS + L++H A Sbjct: 684 ETGDAAILDEVIPFIDGPALPEFSKEQATLYEHCAR 719 >gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction only]. Length = 301 Score = 31.8 bits (72), Expect = 0.19 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 5/49 (10%) Query: 35 DILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83 ++L G+I ++G SG GKS L+ +L + + +GE+ L +G+ Sbjct: 160 ELLAGKITVLLGQSGVGKSTLINALLPELNQKTGEISE-----KLGRGR 203 >gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]. Length = 1294 Score = 30.3 bits (68), Expect = 0.49 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Query: 155 MIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKL----RHSLGLSVYMITHD 210 +I R++LA + +L LDEPT+ LD E K L ++ R + +ITHD Sbjct: 1194 LIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHD 1253 >gnl|CDD|48201 cd03326, MR_like_1, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.. Length = 385 Score = 30.2 bits (68), Expect = 0.64 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 153 GGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186 GG+++ + R LA PD L LD+ LDP A Sbjct: 58 GGLLRERFIPRLLAAAPDSL-LDDAGGNLDPARA 90 >gnl|CDD|35965 KOG0746, KOG0746, KOG0746, 60S ribosomal protein L3 and related proteins [Translation, ribosomal structure and biogenesis]. Length = 384 Score = 30.0 bits (67), Expect = 0.73 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMI-KRVSLAR 163 +I I HT++ ++ L + A+LM Q++GG + ++V AR Sbjct: 144 CQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKVDWAR 185 >gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.. Length = 287 Score = 29.8 bits (67), Expect = 0.84 Identities = 12/36 (33%), Positives = 22/36 (61%) Query: 35 DILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 + L+G+ ++G SG GKS L+ +L + +GE+ Sbjct: 157 EYLKGKTSVLVGQSGVGKSTLINALLPDLDLATGEI 192 >gnl|CDD|133313 cd04113, Rab4, Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 Score = 29.1 bits (66), Expect = 1.3 Identities = 10/14 (71%), Positives = 12/14 (85%) Query: 44 VIGSSGTGKSILMR 57 +IGSSGTGKS L+ Sbjct: 5 IIGSSGTGKSCLLH 18 >gnl|CDD|30843 COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]. Length = 557 Score = 29.0 bits (65), Expect = 1.4 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Query: 19 LTIELNNRIILNNINLDILRGEILGVI-GSSGTGKSILMRGILGLI 63 L + + N I+ + L+ +G L V+ G +G GKSI++ + L+ Sbjct: 3 LELSIKNFAIIEELELEFEKG--LTVLTGETGAGKSIIIDALGLLL 46 >gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 276 Score = 28.6 bits (64), Expect = 1.5 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Query: 19 LTIELNNRIILNNINLDILRGEILGVI-GSSGTGKSILMRGILGLI 63 L + + N ++ + LD G L V+ G +G GKSIL+ + L+ Sbjct: 2 LELSIKNFALIEELELDFEEG--LTVLTGETGAGKSILLDALSLLL 45 >gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.. Length = 271 Score = 28.3 bits (63), Expect = 1.8 Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGIL 60 LN + + +GE++ + +G GK+ +R Sbjct: 20 LNKLTKGLRKGELIILTAGTGVGKTTFLREYA 51 >gnl|CDD|31434 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]. Length = 682 Score = 28.4 bits (63), Expect = 1.9 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Query: 37 LRGEI-LGVIGSSGTGKSILMRGILGLIPRV 66 +RG+I + ++G GT KS L++ + L PR Sbjct: 316 IRGDIHILLVGDPGTAKSQLLKYVAKLAPRG 346 >gnl|CDD|107371 cd06376, PBP1_mGluR_groupIII, Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. Length = 463 Score = 28.3 bits (63), Expect = 2.1 Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 2/30 (6%) Query: 40 EILGVIGSSGTGKSILMRGILGL--IPRVS 67 +++GVIG+S + SI++ IL L IP++S Sbjct: 103 KVVGVIGASASSVSIMVANILRLFQIPQIS 132 >gnl|CDD|147409 pfam05201, GlutR_N, Glutamyl-tRNAGlu reductase, N-terminal domain. Length = 150 Score = 28.3 bits (64), Expect = 2.3 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 7/38 (18%) Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRV 221 + EE ++ L +L+ G+S +I +STCNRV Sbjct: 18 FSDEELEEALEELKALPGVSEAVI-------LSTCNRV 48 >gnl|CDD|33687 COG3899, COG3899, Predicted ATPase [General function prediction only]. Length = 849 Score = 28.0 bits (62), Expect = 2.5 Identities = 13/33 (39%), Positives = 18/33 (54%) Query: 38 RGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 RGE++ V G SG GKS L+ + I + G Sbjct: 23 RGEVVLVAGESGIGKSALVNEVHKPITQQRGYF 55 >gnl|CDD|33697 COG3910, COG3910, Predicted ATPase [General function prediction only]. Length = 233 Score = 27.6 bits (61), Expect = 3.1 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 171 LLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209 + LDEP + L P E +L L S G + + TH Sbjct: 149 IYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATH 186 >gnl|CDD|35679 KOG0458, KOG0458, KOG0458, Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]. Length = 603 Score = 27.7 bits (61), Expect = 3.4 Identities = 15/47 (31%), Positives = 22/47 (46%) Query: 42 LGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L V+G GKS LM +L + +S E + GK +FA+ Sbjct: 180 LVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAY 226 >gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]. Length = 1077 Score = 27.4 bits (60), Expect = 3.6 Identities = 10/20 (50%), Positives = 15/20 (75%) Query: 41 ILGVIGSSGTGKSILMRGIL 60 I+ V+G GTGKS L+R ++ Sbjct: 71 IVAVVGPPGTGKSTLIRSLV 90 >gnl|CDD|143799 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Length = 213 Score = 27.4 bits (62), Expect = 4.5 Identities = 10/21 (47%), Positives = 17/21 (80%) Query: 36 ILRGEILGVIGSSGTGKSILM 56 I +G+ +G+ G SGTGK++L+ Sbjct: 12 IGKGQRIGIFGGSGTGKTVLL 32 >gnl|CDD|73327 cd02762, MopB_1, The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.. Length = 539 Score = 27.2 bits (60), Expect = 4.5 Identities = 12/36 (33%), Positives = 17/36 (47%) Query: 64 PRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHG 99 PR + K+ EHL + G + +A L VL G Sbjct: 199 PRRTETAKLADEHLFVRPGTDAWLLAAMLAVLLAEG 234 >gnl|CDD|133292 cd01892, Miro2, Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 169 Score = 27.2 bits (61), Expect = 4.5 Identities = 10/18 (55%), Positives = 14/18 (77%) Query: 44 VIGSSGTGKSILMRGILG 61 V+G+ G+GKS L+R LG Sbjct: 9 VLGAKGSGKSALLRAFLG 26 >gnl|CDD|146036 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop. Length = 122 Score = 27.3 bits (61), Expect = 4.6 Identities = 8/20 (40%), Positives = 14/20 (70%) Query: 41 ILGVIGSSGTGKSILMRGIL 60 I+ V+G +GK+ L+R +L Sbjct: 2 IVLVVGPKDSGKTTLIRKLL 21 >gnl|CDD|30098 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.. Length = 319 Score = 27.2 bits (60), Expect = 4.6 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Query: 46 GSSGTGKSILMRGIL---GLIPRVSGEVKVLGE 75 GS+G GK+ M G GLIPR ++ +G Sbjct: 88 GSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGR 120 >gnl|CDD|29993 cd01127, TrwB, Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.. Length = 410 Score = 27.2 bits (60), Expect = 5.0 Identities = 8/19 (42%), Positives = 14/19 (73%) Query: 42 LGVIGSSGTGKSILMRGIL 60 +IG++GTGK+ +R +L Sbjct: 45 TMIIGTTGTGKTTQIRELL 63 >gnl|CDD|145244 pfam01964, ThiC, ThiC family. ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine biosynthesis. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis. Length = 421 Score = 26.7 bits (60), Expect = 6.3 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 31/74 (41%) Query: 116 KEHLNLP--ADLIEHIVHTKIA-----IVGLPPETANLMPFQLSGGMIKR---VSLAR-- 163 EHL LP D+ E ++ KIA + P G +R +S AR Sbjct: 327 AEHLGLPNVEDVREGVIAYKIAAHAADLAKGRP------------GARERDDAMSKARKD 374 Query: 164 -------ALAIDPD 170 LA+DP+ Sbjct: 375 LDWEKQFELALDPE 388 >gnl|CDD|33963 COG4240, COG4240, Predicted kinase [General function prediction only]. Length = 300 Score = 26.5 bits (58), Expect = 7.3 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 2 QLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILG 61 +P + ++L + L +I R I+G+ G G+GKS L I+ Sbjct: 17 DQERLPPAFAAL--AQDLHLPLLAKIAPWAQERG--RPLIVGISGPQGSGKSTLSALIVR 72 Query: 62 LIPRVSGE 69 L+ E Sbjct: 73 LLAAKGLE 80 >gnl|CDD|35701 KOG0480, KOG0480, KOG0480, DNA replication licensing factor, MCM6 component [Replication, recombination and repair]. Length = 764 Score = 26.4 bits (58), Expect = 7.5 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Query: 37 LRGEI-LGVIGSSGTGKSILMRGILGLIPR---VSG 68 LRG+I + ++G GTGKS ++ + PR SG Sbjct: 375 LRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSG 410 >gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 Score = 26.3 bits (59), Expect = 7.8 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 9/53 (16%) Query: 110 NISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLA 162 + S + +L+L + +VG P E + PF L + R S+A Sbjct: 241 SASHDLDPYLSLLK------PGGTLVLVGAPEEPLPVPPFPL---IFGRKSVA 284 >gnl|CDD|110677 pfam01695, IstB, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function. Length = 178 Score = 26.5 bits (59), Expect = 8.1 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 23 LNNRIILNNINLD-ILRGEILGVIGSSGTGKSIL 55 L+ R+I LD I + E L ++G G GK+ L Sbjct: 30 LDRRLIAELAGLDWIEQAENLLLLGPPGVGKTHL 63 >gnl|CDD|31432 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism]. Length = 423 Score = 26.5 bits (58), Expect = 8.3 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Query: 34 LDILRGEILGVI--GSSGTGKSILMRGILGLIP 64 L+ + +I G + G GT KS L R + L+P Sbjct: 31 LNAVDPQIGGALIAGEKGTAKSTLARALADLLP 63 >gnl|CDD|31066 COG0722, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]. Length = 351 Score = 26.3 bits (58), Expect = 8.7 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 6/75 (8%) Query: 139 LPPETANLMPFQLSGGMIKRVSLAR--ALAI----DPDLLFLDEPTSGLDPIAAEEFDKL 192 L F LS + V+ +R I D LL + P S DP AA E+ + Sbjct: 16 LITPAELKAEFPLSDEAAETVAQSRKEIEDILHGEDDRLLVVIGPCSIHDPEAALEYARR 75 Query: 193 LIKLRHSLGLSVYMI 207 L LR L + ++ Sbjct: 76 LKALREELKDRLEIV 90 >gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341 Score = 26.1 bits (58), Expect = 8.7 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 8/51 (15%) Query: 125 LIEHIV-----HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPD 170 LI+ I+ +I +VG+ E+ N+ P + K ++L +L P+ Sbjct: 246 LIQQIIEGAPPGGRIVVVGVCMESDNIEPAL---AIRKELTLQFSLGYTPE 293 >gnl|CDD|145608 pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation. Length = 205 Score = 26.3 bits (59), Expect = 8.9 Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 36 ILRGEILGVIGSSGTGKSIL 55 I + +I+ IG +GTGK+ L Sbjct: 16 IRKNDIVFGIGPAGTGKTYL 35 >gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. Length = 207 Score = 26.3 bits (59), Expect = 9.0 Identities = 8/25 (32%), Positives = 18/25 (72%) Query: 45 IGSSGTGKSILMRGILGLIPRVSGE 69 IG G+GK++L + + G++P ++ + Sbjct: 28 IGPPGSGKTMLAKRLPGILPPLTEQ 52 >gnl|CDD|109538 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 196 Score = 26.2 bits (58), Expect = 9.3 Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 41 ILGVIGSSGTGKSILMRGI 59 I+GV GSSG GK+ + R Sbjct: 1 IIGVAGSSGAGKTTVARTF 19 >gnl|CDD|144183 pfam00493, MCM, MCM2/3/5 family. Length = 327 Score = 26.0 bits (58), Expect = 9.7 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%) Query: 36 ILRGEI-LGVIGSSGTGKSILMRGILGLIPR---VSG 68 LRG+I + ++G GT KS L++ + L PR SG Sbjct: 53 RLRGDINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSG 89 >gnl|CDD|73395 cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.. Length = 338 Score = 26.3 bits (58), Expect = 9.7 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDL 171 A+ I + T + + G T M L+ G + + LAR LA++PDL Sbjct: 284 AEKIRKVTKTPLMVTG-GFRTRAAMEQALASGAVDGIGLARPLALEPDL 331 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.139 0.391 Gapped Lambda K H 0.267 0.0842 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,086,895 Number of extensions: 167667 Number of successful extensions: 1025 Number of sequences better than 10.0: 1 Number of HSP's gapped: 819 Number of HSP's successfully gapped: 286 Length of query: 257 Length of database: 6,263,737 Length adjustment: 92 Effective length of query: 165 Effective length of database: 4,275,709 Effective search space: 705491985 Effective search space used: 705491985 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.1 bits)