RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780139|ref|YP_003064552.1| putative ATP-binding component
of ABC transporter [Candidatus Liberibacter asiaticus str. psy62]
         (257 letters)



>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
           organic solvents, ATPase component [Secondary
           metabolites biosynthesis, transport, and catabolism].
          Length = 263

 Score =  296 bits (760), Expect = 4e-81
 Identities = 117/244 (47%), Positives = 175/244 (71%)

Query: 8   SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67
           +  E ++ VR +T    +R+IL+ ++LD+ RGEIL ++G SG+GKS L+R ILGL+    
Sbjct: 3   ASPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK 62

Query: 68  GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127
           GE+ + GE +     ++ +    ++GVLFQ GALFSS+TV EN++ P++EH  LP  LI 
Sbjct: 63  GEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIR 122

Query: 128 HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187
            +V  K+ +VGL    A+L P +LSGGM KRV+LARA+A+DP+LLFLDEPTSGLDPI+A 
Sbjct: 123 ELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG 182

Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247
             D+L+ +L  +LGL+V M+THDL++L++  +RVAV+    ++ EGT  +++ S+DPW+R
Sbjct: 183 VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVR 242

Query: 248 SYFN 251
            +FN
Sbjct: 243 QFFN 246


>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
           transport system involved in resistant to organic
           solvents; ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 235

 Score =  269 bits (690), Expect = 4e-73
 Identities = 106/236 (44%), Positives = 154/236 (65%), Gaps = 1/236 (0%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           + +R LT     R +L  ++LD+ RGEIL +IG SG+GKS L+R I+GL+   SGEV + 
Sbjct: 1   IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           GE ++     + +    ++G+LFQ GALF S+TV EN++ P++EH  L  + I  IV  K
Sbjct: 61  GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK 120

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
           +  VGL     +L P +LSGGM KRV+LARALA+DP+LL  DEPT+GLDPIA+   D L+
Sbjct: 121 LEAVGLRG-AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLI 179

Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSY 249
             L+  LGL+  M+THDL+   +  +R+AV+    I+ EGT  ++  S+DP +R +
Sbjct: 180 RSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDPLVRQF 235


>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
           specific for the transport of dipeptides, oligopeptides
           (OppD), and nickel (NikDE).  The NikABCDE system of E.
           coli belongs to this family and is composed of the
           periplasmic binding protein NikA, two integral membrane
           components (NikB and NikC), and two ATPase (NikD and
           NikE).  The NikABCDE transporter is synthesized under
           anaerobic conditions to meet the increased demand for
           nickel resulting from hydrogenase synthesis.  The
           molecular mechanism of nickel uptake in many bacteria
           and most archaea is not known.  Many other members of
           this ABC family are also involved in the uptake of
           dipeptides and oligopeptides.  The oligopeptide
           transport system (Opp) is a five-component ABC transport
           composed of a membrane-anchored substrate binding
           proteins (SRP), OppA, two transmembrane proteins, OppB
           and OppC, and two ATP-binding domains, OppD and OppF..
          Length = 228

 Score =  177 bits (451), Expect = 2e-45
 Identities = 84/228 (36%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 13  ILSVRNLTIELNNRI----ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68
           +L V+NL++           L++++  I +GE LG++G SG+GKS L R ILGL+   SG
Sbjct: 1   LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60

Query: 69  EVKVLGEHLNLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISMPIKEHLNL-PADL 125
            +   G+ L     +       ++ ++FQ    +L   MT+ E I+ P++ H  L   + 
Sbjct: 61  SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120

Query: 126 IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
            +  V   +  VGLP E  N  P +LSGG  +RV++ARALA++P LL  DEPTS LD   
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
             +   LL KL+  LGL++  ITHDL  +    +RVAV+    I++EG
Sbjct: 181 QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228


>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 339

 Score =  173 bits (440), Expect = 5e-44
 Identities = 84/212 (39%), Positives = 129/212 (60%), Gaps = 2/212 (0%)

Query: 27  IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNF 86
             L++++L+I +GEI G+IG SG GKS L+R I  L    SG V V G+ L      +  
Sbjct: 20  TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79

Query: 87  AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL 146
               K+G++FQH  L SS TV EN++ P+ E   +P   I+  V   + +VGL  + A+ 
Sbjct: 80  QLRQKIGMIFQHFNLLSSRTVFENVAFPL-ELAGVPKAEIKQRVAELLELVGLS-DKADR 137

Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206
            P QLSGG  +RV++ARALA +P +L  DE TS LDP   +   +LL  +   LGL++ +
Sbjct: 138 YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVL 197

Query: 207 ITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           ITH++  +   C+RVAV+ +  +++EGT+S++
Sbjct: 198 ITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229


>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
           systems, contain duplicated ATPase [General function
           prediction only].
          Length = 539

 Score =  171 bits (436), Expect = 1e-43
 Identities = 86/248 (34%), Positives = 135/248 (54%), Gaps = 14/248 (5%)

Query: 7   PSQEEKILSVRNLT------IELNNRII-----LNNINLDILRGEILGVIGSSGTGKSIL 55
           P + E +LSVRNL+        L  R       +++++ D+  GE LG++G SG+GKS L
Sbjct: 274 PLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTL 333

Query: 56  MRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISM 113
            R + GL+P  SG +   G+ L+L  G+       ++ ++FQ    +L   MTV + ++ 
Sbjct: 334 ARILAGLLPPSSGSIIFDGQDLDLTGGELR-RLRRRIQMVFQDPYSSLNPRMTVGDILAE 392

Query: 114 PIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLF 173
           P++ H           V   + +VGLPPE  +  P +LSGG  +RV++ARALA++P LL 
Sbjct: 393 PLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLI 452

Query: 174 LDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
           LDEP S LD     +   LL  L+  LGL+   I+HDL  +    +RVAV+    I++EG
Sbjct: 453 LDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512

Query: 234 TISDIVDS 241
               + ++
Sbjct: 513 PTEKVFEN 520



 Score =  162 bits (412), Expect = 8e-41
 Identities = 80/241 (33%), Positives = 124/241 (51%), Gaps = 12/241 (4%)

Query: 13  ILSVRNLTIELNNR----IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP---- 64
           +L V NLT+E          + +++ ++  GEILG++G SG+GKS L   ++GL+P    
Sbjct: 5   LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64

Query: 65  RVSGEVKVLGEHLNLAKGKQNFAF-SAKLGVLFQH--GALFSSMTVQENISMPIKEHLNL 121
             SGEV + G  L     ++       ++ ++FQ    +L   MT+ + I   ++ H   
Sbjct: 65  ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG 124

Query: 122 PADLIEHIVHTKIAIVGLP-PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180
                       +  VGLP PE  +  P QLSGGM +RV +A ALA+ P LL  DEPT+ 
Sbjct: 125 SRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTA 184

Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
           LD     +   LL  L+  LG++V  ITHDL  +    +RV V+ K  I++ G   +I+ 
Sbjct: 185 LDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244

Query: 241 S 241
           +
Sbjct: 245 N 245


>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
           is an ABC-type transporter encoded by metN of the metNPQ
           operon in Bacillus subtilis that is involved in
           methionine transport.  Other members of this system
           include the MetP permease and  the MetQ substrate
           binding protein.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 233

 Score =  169 bits (431), Expect = 5e-43
 Identities = 87/212 (41%), Positives = 129/212 (60%), Gaps = 2/212 (0%)

Query: 27  IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNF 86
             L +++L + +GEI G+IG SG GKS L+R I GL    SG V V G  L L  GK+  
Sbjct: 19  TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78

Query: 87  AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL 146
               ++G++FQH  L SS TV EN+++P+ E   +P   IE  V   + +VGL  + A+ 
Sbjct: 79  KARRRIGMIFQHFNLLSSRTVFENVALPL-EIAGVPKAEIEERVLELLELVGLE-DKADA 136

Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206
            P QLSGG  +RV +ARALA +P +L  DE TS LDP   +    LL  +   LGL++ +
Sbjct: 137 YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVL 196

Query: 207 ITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           ITH++  +   C+RVAV++K  +++EGT+ ++
Sbjct: 197 ITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228


>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
           component [Defense mechanisms].
          Length = 293

 Score =  165 bits (419), Expect = 1e-41
 Identities = 76/231 (32%), Positives = 131/231 (56%), Gaps = 7/231 (3%)

Query: 12  KILSVRNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           +++ VRNLT +   ++  L+ ++ ++  GEI G++G +G GK+ L++ + GL+   SGE+
Sbjct: 3   EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130
            VLG  +     K+      ++G + Q  +L+  +TV+EN+    + +  L  +  E  +
Sbjct: 63  LVLGYDVV----KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY-GLSKEEAEERI 117

Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190
              + + GL  + AN     LSGGM +R+S+A AL  DP+LL LDEPTSGLDP +  E  
Sbjct: 118 EELLELFGLEDK-ANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176

Query: 191 KLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
           +LL +L    G+++ + TH L      C+RV ++    I+ EGT  ++ + 
Sbjct: 177 ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227


>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
           ATP-binding subunits of the bacterial ABC-type nitrate
           and sulfonate transport systems, respectively.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 220

 Score =  161 bits (410), Expect = 2e-40
 Identities = 79/231 (34%), Positives = 119/231 (51%), Gaps = 18/231 (7%)

Query: 14  LSVRNLTI----ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69
           L VRN++            L +I+L +  GE + ++G SG GKS L+R I GL    SGE
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 70  VKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHI 129
           V V GE +               G +FQ  AL   +TV +N+++ ++    +P       
Sbjct: 61  VLVDGEPVT--------GPGPDRGYVFQQDALLPWLTVLDNVALGLELQ-GVPKAEARER 111

Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189
               + +VGL     N  P QLSGGM +RV+LARALA+DPD+L LDEP S LD +  E+ 
Sbjct: 112 AEELLELVGLS-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL 170

Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
            + L+ +    G +V ++THD++  +   +RV V+  +     G I   V+
Sbjct: 171 QEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARP----GRIVAEVE 217


>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
           Protein Dependent) systems that are largely represented
           in archaea and eubacteria and are primarily involved in
           scavenging solutes from the environment.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 178

 Score =  161 bits (409), Expect = 2e-40
 Identities = 76/212 (35%), Positives = 114/212 (53%), Gaps = 37/212 (17%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L ++N++     + +LN+++L+I  GEI+ ++G SG+GKS L+R I GL    SG + + 
Sbjct: 1   LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           GE L      +      ++G++FQ  ALF  +TV ENI++                    
Sbjct: 61  GEDLT-DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------- 100

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
                            LSGG  +RV+LARALA+DPD+L LDEPTS LDPI   E   LL
Sbjct: 101 -----------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALL 143

Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQ 225
             L+  LG++V ++THDL+      +RV V++
Sbjct: 144 KSLQAQLGITVVLVTHDLDEAARLADRVVVLR 175


>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
           system, ATPase component [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 316

 Score =  159 bits (404), Expect = 6e-40
 Identities = 75/245 (30%), Positives = 135/245 (55%), Gaps = 17/245 (6%)

Query: 13  ILSVRNLTIELNNRI----ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR--- 65
           +L V+NL++           ++ ++ ++ +GEILG++G SG+GKS+L + I+GL+P+   
Sbjct: 1   LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60

Query: 66  --VSGEVKVLGEHL-NLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISMPIKEHLN 120
             V GE+   G+ L +L++ +       ++ ++FQ    +L   MT+ + I+  ++ H  
Sbjct: 61  RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK 120

Query: 121 LP--ADLIEHIVHTKIAIVGLPP--ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176
                +  E  +   + +VG+P         P +LSGGM +RV +A ALA++P LL  DE
Sbjct: 121 GLSKKEAKERAIEL-LELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADE 179

Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTIS 236
           PT+ LD     +   LL +L+   G ++ +ITHDL  +    +RVAV+    I++EG + 
Sbjct: 180 PTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVE 239

Query: 237 DIVDS 241
           +I  +
Sbjct: 240 EIFKN 244


>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
           Transporters-like subgroup.  This family is comprised of
           proteins involved in the transport of apparently
           unrelated solutes and proteins specific for di- and
           oligosaccharides and polyols.  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides and more complex organic molecules.  The
           nucleotide-binding domain shows the highest similarity
           between all members of the family.   ABC transporters
           are a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 213

 Score =  159 bits (404), Expect = 6e-40
 Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 15/223 (6%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L ++ L+    +   L++++L +  GE L ++G SG GK+ L+R I GL    SGE+ + 
Sbjct: 1   LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60

Query: 74  GEHL-NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
           G  +  +   ++N      +G++FQ  ALF  +TV ENI+  +K    +P   I   V  
Sbjct: 61  GRDVTGVPPERRN------IGMVFQDYALFPHLTVAENIAFGLKLRG-VPKAEIRARVRE 113

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
            + +VGL     N  P +LSGG  +RV+LARALA +P LL LDEP S LD    EE  + 
Sbjct: 114 LLELVGLEGL-LNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE 172

Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235
           L +L+  LG++   +THD    ++  +R+AV      M EG I
Sbjct: 173 LKELQRELGITTIYVTHDQEEALALADRIAV------MNEGRI 209


>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component [Inorganic ion transport and
           metabolism].
          Length = 248

 Score =  158 bits (402), Expect = 1e-39
 Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 14/228 (6%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           +L +  ++       +L +INL + +GE + ++G SG GKS L+R I GL    SGEV +
Sbjct: 3   LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
            G  +              +G +FQ  AL   +TV +N+++ ++      A+  E     
Sbjct: 63  DGRPVT--------GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE-RAKE 113

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
            + +VGL     +  P QLSGGM +RV++ARALA  P LL LDEP   LD +  EE    
Sbjct: 114 LLELVGLA-GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE 172

Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
           L++L      +V ++THD++  +   +RV V+      + G I + ++
Sbjct: 173 LLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSN----RPGRIGEELE 216


>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
           system, ATPase component [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 252

 Score =  152 bits (385), Expect = 9e-38
 Identities = 84/234 (35%), Positives = 128/234 (54%), Gaps = 11/234 (4%)

Query: 14  LSVRNLTIELNNRI----ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69
           LSVRNL+I           LNN++L+I RGE LG++G SG+GKS L R + GL    SG 
Sbjct: 4   LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63

Query: 70  VKVLGEHLNLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISMPIKEHLNLPADLIE 127
           + + G+ L  A  K+  AF   + ++FQ    +L    TV   +S P++ H        +
Sbjct: 64  ILLDGKPL--APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKSQ 118

Query: 128 HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187
             +   +  VGLPP   +  P +LSGG  +R+++ARAL  +P LL LDEPTS LD     
Sbjct: 119 QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178

Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
           +   LL++L+   GL+   I+HDL  +   C+R+AV+    I++ G   +++  
Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232


>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
           fundamental importance in the cell physiology of
           bacteria because phosphate is required as a nutrient.
           The Pst system of E. coli comprises four distinct
           subunits encoded by the pstS, pstA, pstB, and pstC
           genes.  The PstS protein is a phosphate-binding protein
           located in the periplasmic space. P stA and PstC are
           hydrophobic and they form the transmembrane portion of
           the Pst system.  PstB is the catalytic subunit, which
           couples the energy of ATP hydrolysis to the import of
           phosphate across cellular membranes through the Pst
           system, often referred as ABC-protein.  PstB belongs to
           one of the largest superfamilies of proteins
           characterized by a highly conserved adenosine
           triphosphate (ATP) binding cassette (ABC), which is also
           a nucleotide binding domain (NBD)..
          Length = 227

 Score =  152 bits (385), Expect = 1e-37
 Identities = 63/217 (29%), Positives = 114/217 (52%), Gaps = 10/217 (4%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP-----RVSG 68
           + +R+L +   ++  L +I+LDI +GEI  +IG SG GKS L+R +  L          G
Sbjct: 1   IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60

Query: 69  EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128
           EV + G+ +             ++G++FQ    F   ++ +N++  ++ H     + ++ 
Sbjct: 61  EVLLDGKDIY-DLDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDE 118

Query: 129 IVHTKIAIVGLPPETAN-LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187
            V   +    L  E  + L    LSGG  +R+ LARALA +P++L LDEPTS LDPI+  
Sbjct: 119 RVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTA 178

Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224
           + ++L+ +L+     ++ ++TH++       +R A +
Sbjct: 179 KIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFL 213


>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 240

 Score =  151 bits (384), Expect = 1e-37
 Identities = 74/242 (30%), Positives = 129/242 (53%), Gaps = 5/242 (2%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           ++ ++NL+    ++ +L  I+L + +GE++ +IG SG+GKS L+R + GL    SG + V
Sbjct: 2   MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
            GE  ++   K       K+G++FQ   LF  +TV EN+++   +   L           
Sbjct: 62  DGE--DVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALE 119

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
            +  VGL  + A+  P QLSGG  +RV++ARALA+DP ++  DEPTS LDP    E   +
Sbjct: 120 LLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV 178

Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD-SNDPWIRSYFN 251
           +  L    G+++ ++TH++       +RV  + +  I++EG   +  D       R + +
Sbjct: 179 MKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQFLS 237

Query: 252 RF 253
           + 
Sbjct: 238 KI 239


>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 345

 Score =  151 bits (382), Expect = 2e-37
 Identities = 79/249 (31%), Positives = 123/249 (49%), Gaps = 8/249 (3%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           + + N+         L++I+LDI  GE++ ++G SG GKS L+R I GL    +G +++ 
Sbjct: 3   IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEH-LNLPADLIEHIVHT 132
           G    L           K+G +FQH ALF  MTV +NI+  +K          I   V  
Sbjct: 63  GR--VLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEE 120

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
            + +V L    A+  P QLSGG  +RV+LARALA++P +L LDEP   LD    +E  + 
Sbjct: 121 LLRLVQLEG-LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW 179

Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD-SNDPWIRSYF- 250
           L KL   LG++   +THD    +   +RV V+ +  I + G   ++ D     ++  +  
Sbjct: 180 LRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFLG 239

Query: 251 --NRFTKRI 257
             N     +
Sbjct: 240 EVNVLPGEV 248


>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
           ATPase components [Amino acid transport and metabolism].
          Length = 352

 Score =  151 bits (382), Expect = 2e-37
 Identities = 81/229 (35%), Positives = 130/229 (56%), Gaps = 8/229 (3%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
            L +RN++    +   +++I+LDI +GE + ++G SG GK+ L+R I G     SGE+ +
Sbjct: 5   ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILL 64

Query: 73  LGEHL-NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131
            GE + ++   K+       +G++FQ  ALF  MTV+EN++  +K    L    I+  V 
Sbjct: 65  DGEDITDVPPEKRP------IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118

Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
             + +VGL    A+  P QLSGG  +RV+LARAL  +P +L LDEP S LD    E+  K
Sbjct: 119 EALELVGLE-GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRK 177

Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
            L +L+  LG++   +THD    ++  +R+AV+    I + GT  +I +
Sbjct: 178 ELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226


>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
           a cobalt transport family found in bacteria, archaea,
           and eukaryota.  The transition metal cobalt is an
           essential component of many enzymes and must be
           transported into cells in appropriate amounts when
           needed.  This ABC transport system of the CbiMNQO family
           is involved in cobalt transport in association with the
           cobalamin (vitamin B12) biosynthetic pathways.  Most of
           cobalt (Cbi) transport systems possess a separate CbiN
           component, the cobalt-binding periplasmic protein, and
           they are encoded by the conserved gene cluster cbiMNQO. 
           Both the CbiM and CbiQ proteins are integral cytoplasmic
           membrane proteins, and the CbiO protein has the linker
           peptide and the Walker A and B motifs commonly found in
           the ATPase components of the ABC-type transport
           systems..
          Length = 211

 Score =  150 bits (380), Expect = 4e-37
 Identities = 82/215 (38%), Positives = 130/215 (60%), Gaps = 9/215 (4%)

Query: 15  SVRNLTIELNN--RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
            ++NL+    +  R  L++I+L I +GE + ++G +G+GKS L+R + GL+   SGEV V
Sbjct: 1   ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGAL-FSSMTVQENISMPIKEHLNLPADLIEHIVH 131
            G+ L     K+      K+G++FQ+    F   TV+E ++  + E+L LP + IE  V 
Sbjct: 61  DGKDLTKLSLKE---LRRKVGLVFQNPDDQFFGPTVEEEVAFGL-ENLGLPEEEIEERVE 116

Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
             + +VGL     +  PF LSGG  +RV++A  LA+DPD+L LDEPT+GLDP    E  +
Sbjct: 117 EALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE 175

Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226
           LL KL  + G ++ ++THDL+ L+   +RV V++ 
Sbjct: 176 LLKKL-KAEGKTIIIVTHDLDLLLELADRVIVLED 209


>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 226

 Score =  147 bits (373), Expect = 3e-36
 Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 7/225 (3%)

Query: 13  ILSVRNLT----IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68
           ++ ++N++    +       L ++NL+I  GE + ++G SG+GKS L+  + GL    SG
Sbjct: 1   MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60

Query: 69  EVKVLGEHLNLAKGKQNFAFSAK-LGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127
           EV + G+ L     K+      K +G +FQ+  L   +TV EN+ +P+       A   +
Sbjct: 61  EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA-GKSAGRRK 119

Query: 128 HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187
                 + ++GL        P +LSGG  +RV++ARAL  +P ++  DEPT  LD   A+
Sbjct: 120 RAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179

Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232
           E  +LL +L    G ++ M+THD   L    +RV  ++   I +E
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP-ELAKYADRVIELKDGKIEEE 223


>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 235

 Score =  146 bits (370), Expect = 5e-36
 Identities = 79/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 12  KILSVRNLTIELNNR-IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           +++   NL+     R   L +++L+I +GE + +IG +G+GKS L++ + GL+   SGEV
Sbjct: 2   RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSM-TVQENISMPIKEHLNLPADLIEHI 129
            V G   +  K         K+G++FQ+        TV++ ++  + E+L LP + IE  
Sbjct: 62  LVDGLDTSSEKSL--LELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLGLPREEIEER 118

Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189
           V   + +VGL  E  +  PF LSGG  +RV++A  LA+ P++L LDEPT+GLDP    E 
Sbjct: 119 VAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177

Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243
            +LL KL+   G ++ ++THDL  ++   +RV V+    I+ +G  ++I +  +
Sbjct: 178 LELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAE 231


>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 254

 Score =  145 bits (367), Expect = 1e-35
 Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 13/224 (5%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
             ++ V NLT+   NR +L +I+L + +GEI  +IG +G GKS L++ ILGL+   SGE+
Sbjct: 2   MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSS--MTVQENISMPIKEHLNLPADLIEH 128
           K+ G+ +   + +       ++G + Q  ++  S  +TV++ + +           L + 
Sbjct: 62  KIFGKPVRKRRKRL------RIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKK 115

Query: 129 ---IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
               V   +  VG+  +  +    +LSGG  +RV LARALA +PDLL LDEP +G+D   
Sbjct: 116 DKEKVDEALERVGM-EDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG 174

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGI 229
            +E   LL +LR   G +V M+THDL  +++  +RV  + +  I
Sbjct: 175 QKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRHLI 217


>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
           systems, ATPase components [Inorganic ion transport and
           metabolism / Coenzyme metabolism].
          Length = 258

 Score =  144 bits (366), Expect = 2e-35
 Identities = 75/231 (32%), Positives = 124/231 (53%), Gaps = 7/231 (3%)

Query: 12  KILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
            +L V NL+     + IL++++  I +GEI G++G +G+GKS L++ + GL+   SGEV 
Sbjct: 1   MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL---PADLIEH 128
           + G+ +     K+    + KL  + Q  +    +TV E + +    HL L   P+   E 
Sbjct: 61  LDGKDIASLSPKE---LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE 117

Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188
           IV   + ++GL       +  +LSGG  +RV +ARALA +  +L LDEPTS LD     E
Sbjct: 118 IVEEALELLGLEHLADRPV-DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIE 176

Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239
             +LL  L    GL+V M+ HDLN      + + +++   I+ +GT  +++
Sbjct: 177 VLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227


>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
           betaine/L-proline ATP binding subunit in bacteria and
           its equivalents in archaea.  This transport system
           belong to the larger ATP-Binding Cassette (ABC)
           transporter superfamily.  The characteristic feature of
           these transporters is the obligatory coupling of ATP
           hydrolysis to substrate translocation.  ABC transporters
           are a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 269

 Score =  144 bits (364), Expect = 3e-35
 Identities = 77/224 (34%), Positives = 129/224 (57%), Gaps = 4/224 (1%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           +N+++LD+  GEI  ++G SG+GKS L+R I  LI   SG+V + G+ +     K+    
Sbjct: 40  VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99

Query: 89  -SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147
              K+ ++FQ  AL    TV EN++  + E   +P    E      + +VGL     +  
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGL-EVQGVPRAEREERAAEALELVGLEGW-EHKY 157

Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207
           P +LSGGM +RV LARALA+DPD+L +DE  S LDP+   E    L++L+  L  ++  I
Sbjct: 158 PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFI 217

Query: 208 THDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS-NDPWIRSYF 250
           THDL+  +   +R+A+++   +++ GT  +I+ +  + ++R +F
Sbjct: 218 THDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFF 261


>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
           ATPase components [Amino acid transport and metabolism].
          Length = 309

 Score =  143 bits (362), Expect = 5e-35
 Identities = 74/228 (32%), Positives = 127/228 (55%), Gaps = 5/228 (2%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           ++   N++    N+  ++++NL I  GE L +IG SG+GK+  ++ I  LI   SGE+ +
Sbjct: 1   MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
            GE ++            K+G + Q   LF  +TV ENI+  + + L    + I+     
Sbjct: 61  DGEDISDLDP---VELRRKIGYVIQQIGLFPHLTVAENIAT-VPKLLGWDKERIKKRADE 116

Query: 133 KIAIVGLPP-ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
            + +VGL P E A+  P +LSGG  +RV +ARALA DP +L +DEP   LDPI  ++  +
Sbjct: 117 LLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQE 176

Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239
            + +L+  LG ++  +THD++  +   +R+AV+    I++  T  +I+
Sbjct: 177 EIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224


>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
           belongs to a multisubunit transporter involved in drug
           resistance (BcrA and DrrA), nodulation, lipid transport,
           and lantibiotic immunity.  In bacteria and archaea,
           these transporters usually include an ATP-binding
           protein and one or two integral membrane proteins.
           Eukaryote systems of the ABCA subfamily display ABC
           domains that are quite similar to this family.  The
           ATP-binding domain shows the highest similarity between
           all members of the ABC transporter family.  ABC
           transporters are a subset of nucleotide hydrolases that
           contain a signature motif, Q-loop, and H-loop/switch
           region, in addition to, the Walker A motif/P-loop and
           Walker B motif commonly found in a number of ATP- and
           GTP-binding and hydrolyzing proteins..
          Length = 173

 Score =  143 bits (362), Expect = 5e-35
 Identities = 72/216 (33%), Positives = 117/216 (54%), Gaps = 43/216 (19%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           + VRNL+     +  L++I+L + +GEI G++G +G GK+ L++ ILGL+   SGE+KVL
Sbjct: 1   IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           G+ +     K+      ++G L +  +L+ ++TV+EN+                      
Sbjct: 61  GKDI----KKEPEEVKRRIGYLPEEPSLYENLTVRENL---------------------- 94

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
                           +LSGGM +R++LA+AL  DP+LL LDEPTSGLDP +  EF +LL
Sbjct: 95  ----------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138

Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGI 229
            +L+   G ++ + +H L      C+RVA++    I
Sbjct: 139 RELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173


>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
           ATPase component [Amino acid transport and metabolism].
          Length = 386

 Score =  142 bits (359), Expect = 9e-35
 Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 10/232 (4%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           +N+ +LD+  GEI  ++G SG+GKS L+R +  LI    GE+ V G+ +      +    
Sbjct: 44  VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103

Query: 89  SA-KLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147
              K+ ++FQ  AL    TV EN++  + E   +P    E      + +VGL    A+  
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGL-EVQGVPKAEREERALEALELVGLEG-YADKY 161

Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207
           P +LSGGM +RV LARALA DPD+L +DE  S LDP+   E    L++L+  L  ++  I
Sbjct: 162 PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFI 221

Query: 208 THDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS--NDPWIRSYFNRFTKRI 257
           THDL+  +   +R+A+++   I++ GT  +I+ +  ND     Y   F + +
Sbjct: 222 THDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPAND-----YVRDFVRNV 268


>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
           transporters.  This family includes transporters
           involved in the uptake of various metallic cations such
           as iron, manganese, and zinc.  The ATPases of this group
           of transporters are very similar to members of
           iron-siderophore uptake family suggesting that they
           share a common ancestor.  The best characterized
           metal-type ABC transporters are the YfeABCD system of Y.
           pestis, the SitABCD system of Salmonella enterica
           serovar Typhimurium, and the SitABCD transporter of
           Shigella flexneri.  Moreover other uncharacterized
           homologs of these metal-type transporters are mainly
           found in pathogens like Haemophilus or enteroinvasive E.
           coli isolates..
          Length = 213

 Score =  141 bits (358), Expect = 1e-34
 Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 15/221 (6%)

Query: 15  SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG 74
            V +LT+      +L +++ ++  GE L ++G +G GKS L++ ILGL+   SG ++V G
Sbjct: 1   EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60

Query: 75  EHLNLAKGKQNFAFSAKLGVLFQHGALFSSM--TVQENISMPIKEHLNL---PADLIEHI 129
           + L             ++G + Q  ++      +V++ + M +  H  L    +   +  
Sbjct: 61  KPLEK--------ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112

Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189
           V   +  VGL  E A+    +LSGG  +RV LARAL  DPDLL LDEP +G+DP   E+ 
Sbjct: 113 VDEALERVGL-SELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI 171

Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIM 230
            +LL +L    G+++ ++THDL  ++   +RV ++ +  + 
Sbjct: 172 YELLREL-RREGMTILVVTHDLGLVLEYFDRVLLLNRTVVA 211


>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
           ATP-binding cassette, macrolide-specific ABC-type efflux
           carrier (MacAB), and proteins involved in cell division
           (FtsE), and release of liporoteins from the cytoplasmic
           membrane (LolCDE).  They are clustered together
           phylogenetically.  MacAB is an exporter that confers
           resistance to macrolides, while the LolCDE system is not
           a transporter at all.  An FtsE null mutants showed
           filamentous growth and appeared viable on high salt
           medium only, indicating a role for FtsE in cell division
           and/or salt transport.  The LolCDE complex catalyses the
           release of lipoproteins from the cytoplasmic membrane
           prior to their targeting to the outer membrane..
          Length = 218

 Score =  141 bits (357), Expect = 2e-34
 Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 8/217 (3%)

Query: 14  LSVRNLT----IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69
           + ++NL+            L  ++L I +GE + ++G SG+GKS L+  + GL    SGE
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60

Query: 70  VKVLGEHLNLAKGKQNFAFSAK-LGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128
           V+V G  ++    K+  AF  + +G +FQ   L   +T  EN+ +P+     +P      
Sbjct: 61  VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPL-LLAGVPKKERRE 119

Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188
                +  VGL  +  N  P +LSGG  +RV++ARALA DP ++  DEPT  LD    +E
Sbjct: 120 RAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKE 178

Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQ 225
             +LL +L    G ++ ++THD   L    +R+  ++
Sbjct: 179 VMELLRELNKEAGTTIVVVTHD-PELAEYADRIIELR 214


>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
           components of the bacterial periplasmic histidine and
           glutamine permeases, repectively.  Histidine permease is
           a multisubunit complex containing the HisQ and HisM
           integral membrane subunits and two copies of HisP.  HisP
           has properties intermediate between those of integral
           and peripheral membrane proteins and is accessible from
           both sides of the membrane, presumably by its
           interaction with HisQ and HisM.  The two HisP subunits
           form a homodimer within the complex.  The domain
           structure of the amino acid uptake systems is typical
           for prokaryote extracellular solute binding
           protein-dependent uptake systems.  All of the amino acid
           uptake systems also have at least one, and in a few
           cases, two extracellular solute binding proteins located
           in the periplasm of Gram-negative bacteria, or attached
           to the cell membrane of Gram-positive bacteria.  The
           best-studied member of the PAAT (polar amino acid
           transport) family is the HisJQMP system of S.
           typhimurium, where HisJ is the extracellular solute
           binding proteins and HisP is the ABC protein..
          Length = 213

 Score =  140 bits (355), Expect = 3e-34
 Identities = 69/208 (33%), Positives = 112/208 (53%), Gaps = 3/208 (1%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           + ++NL     +  +L  I+L + +GE++ +IG SG+GKS L+R I  L    SG + + 
Sbjct: 1   IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           G  L   K K       K+G++FQ   LF  +TV ENI++   +   +     E      
Sbjct: 61  GLKLTDDK-KNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALEL 119

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
           +  VGL  + A+  P QLSGG  +RV++ARALA++P ++  DEPTS LDP    E   ++
Sbjct: 120 LEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178

Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRV 221
             L    G+++ ++TH++       +RV
Sbjct: 179 KDLAEE-GMTMVVVTHEMGFAREVADRV 205


>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
           systems, ATPase component [Amino acid transport and
           metabolism].
          Length = 250

 Score =  136 bits (343), Expect = 7e-33
 Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 20/245 (8%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           +L VR L+        +N+++L++  GEI+G+IG +G GK+ L   I G     SG V  
Sbjct: 4   LLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIF 63

Query: 73  LGEHLNLAKGKQNFAFSAKLGVL--FQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130
            G  +      +     A+LG+   FQ   LF  +TV EN+++     L L   L     
Sbjct: 64  RGRDITGLPPHR----IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRA 119

Query: 131 HTK-----------IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTS 179
             +           +  VGL    A+     LS G  +R+ +ARALA  P LL LDEP +
Sbjct: 120 RKEEREARERARELLEFVGLGEL-ADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAA 178

Query: 180 GLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239
           GL+P   EE  +L+ +LR   G+++ +I HD+  ++   +R+ V+    ++ EGT  ++ 
Sbjct: 179 GLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238

Query: 240 DSNDP 244
             N+P
Sbjct: 239 --NNP 241


>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
           component of a bacterial solute transporter that serves
           a protective role to cells growing in a hyperosmolar
           environment.  ABC (ATP-binding cassette) transporter
           nucleotide-binding domain; ABC transporters are a large
           family of proteins involved in the transport of a wide
           variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition, to the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 242

 Score =  135 bits (341), Expect = 1e-32
 Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 5/214 (2%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           +NN+NL+I +GE L +IG SG+GK+  M+ I  LI   SGE+ + GE +      +    
Sbjct: 17  VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVE---L 73

Query: 89  SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET-ANLM 147
             K+G + Q   LF  MTV+ENI++ + + L  P + I       +A+VGL P   A+  
Sbjct: 74  RRKIGYVIQQIGLFPHMTVEENIAL-VPKLLKWPKEKIRERADELLALVGLDPAEFADRY 132

Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207
           P +LSGG  +RV +ARALA DP LL +DEP   LDPI  ++  +   +L+  LG ++  +
Sbjct: 133 PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFV 192

Query: 208 THDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
           THD++      +R+A+++   I++ GT  +I+ S
Sbjct: 193 THDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226


>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
           subfamily is involved in the transport of the
           hydrophobic amino acids leucine, isoleucine and valine. 
           MJ1267 is a branched-chain amino acid transporter with
           29% similarity to both the LivF and LivG components of
           the E. coli  branched-chain amino acid transporter.
           MJ1267 contains an insertion from residues 114 to 123
           characteristic of LivG (Leucine-Isoleucine-Valine)
           homologs.  The branched-chain amino acid transporter
           from E. coli comprises a heterodimer of ABCs (LivF and
           LivG), a heterodimer of six-helix TM domains (LivM and
           LivH), and one of two alternative soluble periplasmic
           substrate binding proteins (LivK or LivJ)..
          Length = 236

 Score =  134 bits (338), Expect = 4e-32
 Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 19/242 (7%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L VR LT      + L++++  +  GEI G+IG +G GK+ L   I G +   SG V   
Sbjct: 1   LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFD 60

Query: 74  GEHLNLAKGKQNFAFSAKLGVL--FQHGALFSSMTVQENISMPIKEHLNLPADL------ 125
           GE +    G       A+LG+   FQ   LF  +TV EN+ +  +        L      
Sbjct: 61  GEDIT---GLPPHEI-ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARRE 116

Query: 126 ---IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
                      +  VGL    A+    +LS G  +R+ +ARALA DP LL LDEP +GL+
Sbjct: 117 EREARERAEELLERVGLADL-ADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175

Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
           P   EE  +L+ +LR   G++V ++ HD++ ++S  +RV V+ +  ++ EGT  ++   N
Sbjct: 176 PEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR--N 232

Query: 243 DP 244
           +P
Sbjct: 233 NP 234


>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
           component of the spermidine/putrescine-preferential
           uptake system consisting of PotA, -B, -C, and -D.  PotA
           has two domains with the N-terminal domain containing
           the ATPase activity and the residues required for
           homodimerization with PotA and heterdimerization with
           PotB.  ABC transporters are a large family of proteins
           involved in the transport of a wide variety of different
           compounds, like sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 232

 Score =  133 bits (337), Expect = 4e-32
 Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           + + N++      + L+ ++LDI  GE   ++G SG GK+ L+R I G     SGE+ + 
Sbjct: 1   IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60

Query: 74  GEHL-NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
           G+ + NL   K+          +FQ+ ALF  +TV ENI+  ++    LP   I+  V  
Sbjct: 61  GKDITNLPPHKRPV------NTVFQNYALFPHLTVFENIAFGLR-LKKLPKAEIKERVAE 113

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
            + +V L    AN  P QLSGG  +RV++ARAL  +P +L LDEP   LD    ++    
Sbjct: 114 ALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE 172

Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
           L +L+  LG++   +THD    ++  +R+AV+ K  I + GT  +I + 
Sbjct: 173 LKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221


>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
           complex cysAWTP involved in sulfate import.  Responsible
           for energy coupling to the transport system.  The
           complex is composed of two ATP-binding proteins (cysA),
           two transmembrane proteins (cysT and cysW), and a
           solute-binding protein (cysP).  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 239

 Score =  133 bits (337), Expect = 4e-32
 Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 16  VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE 75
           VRN++    + + L++++LDI  GE++ ++G SG+GK+ L+R I GL    SG +   GE
Sbjct: 5   VRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGE 64

Query: 76  HLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKE---HLNLPADLIEHIVHT 132
                  ++       +G +FQH ALF  MTV +N++  ++        P   I   VH 
Sbjct: 65  DATDVPVQER-----NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHE 119

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
            + +V L    A+  P QLSGG  +RV+LARALA++P +L LDEP   LD    +E  + 
Sbjct: 120 LLKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW 178

Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
           L +L   L ++   +THD    +   +RV V+ K  I + GT  ++ D 
Sbjct: 179 LRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227


>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
           duplicated ATPase component [General function prediction
           only].
          Length = 534

 Score =  133 bits (337), Expect = 4e-32
 Identities = 79/255 (30%), Positives = 126/255 (49%), Gaps = 15/255 (5%)

Query: 8   SQEEKILSVRNLTIELNN----RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI 63
                +LS+RNL++  +        +  I+ DI  GE L ++G SG+GKS+    ILGL+
Sbjct: 1   MMTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL 60

Query: 64  P-----RVSGEVKVLGEH-LNLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISMPI 115
           P       SG +   GE  L  ++ +       K+G++FQ    +L    T+ + ++  +
Sbjct: 61  PSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVL 120

Query: 116 KEHLNLPADLIEHIVHTKIAIVGLPPETANL--MPFQLSGGMIKRVSLARALAIDPDLLF 173
           + H  L            + +VG+P     L   P +LSGG  +RV +A ALA +PDLL 
Sbjct: 121 RLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLI 180

Query: 174 LDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
            DEPT+ LD     +   LL +L+  LG+++  ITHDL  +    +RV V+Q   I++ G
Sbjct: 181 ADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETG 240

Query: 234 TISDIV-DSNDPWIR 247
           T   +      P+ R
Sbjct: 241 TTETLFAAPQHPYTR 255



 Score =  132 bits (334), Expect = 8e-32
 Identities = 79/249 (31%), Positives = 131/249 (52%), Gaps = 15/249 (6%)

Query: 7   PSQEEKILSVRNLTI-----------ELNNRIILNNINLDILRGEILGVIGSSGTGKSIL 55
           P     +L V +L +            +++   ++ I+L + RG+ LG++G SG+GKS L
Sbjct: 270 PEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTL 329

Query: 56  MRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQ--HGALFSSMTVQENISM 113
              +L LIP   GE++  G+ ++    K+      ++ V+FQ  +G+L   MTV + I  
Sbjct: 330 GLALLRLIPS-QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEE 388

Query: 114 PIKEH-LNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLL 172
            ++ H   L A   +  V   +  VGL P T N  P + SGG  +R+++ARAL + P+L+
Sbjct: 389 GLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELI 448

Query: 173 FLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232
            LDEPTS LD     +   LL  L+   GLS   I+HDL  + + C+RV V++   I+++
Sbjct: 449 LLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508

Query: 233 GTISDIVDS 241
           G    +  +
Sbjct: 509 GPTEAVFAN 517


>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
           ATPase component [Inorganic ion transport and
           metabolism].
          Length = 258

 Score =  130 bits (329), Expect = 3e-31
 Identities = 66/239 (27%), Positives = 120/239 (50%), Gaps = 9/239 (3%)

Query: 11  EKILSVRNLT-IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69
           E ++ V+NL+         L ++NL+I +GE++ +IG SG GKS L+R + GL+   SGE
Sbjct: 1   EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60

Query: 70  VKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEH-------LNLP 122
           +   G  +   KGK+       +G++FQ   L   ++V EN+ +    +         L 
Sbjct: 61  ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120

Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
           +   +      +  VG+  + A      LSGG  +RV++ARAL   P ++  DEP + LD
Sbjct: 121 SKEDKAQALDALERVGI-LDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179

Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
           P +A++   +L  +    G++V +  H ++      +R+  ++   I+ +G  S++ D 
Sbjct: 180 PESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDE 238


>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 268

 Score =  129 bits (325), Expect = 1e-30
 Identities = 68/240 (28%), Positives = 101/240 (42%), Gaps = 50/240 (20%)

Query: 11  EKILSVRNLTIELNNR---------IILNNINLDILRGEILGVIGSSGTGKSILMRGILG 61
           E +L V+NL                  ++ ++  I  GE LG++G SG GKS L R ILG
Sbjct: 2   EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG 61

Query: 62  LIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL 121
           L    SGE+   G                                         K+   L
Sbjct: 62  LEEPTSGEILFEG-----------------------------------------KDITKL 80

Query: 122 PADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGL 181
             +     V   +  VGLP E     P +LSGG  +R+ +ARALA++P L+  DEP S L
Sbjct: 81  SKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSAL 140

Query: 182 DPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
           D     +   LL  L+  LGL+   I+HDL+ +    +R+AV+    I++ G   ++  +
Sbjct: 141 DVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200


>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
           involved in the uptake of siderophores, heme, and
           vitamin B12, are widely conserved in bacteria and
           archaea.  Only very few species lack representatives of
           the siderophore family transporters.  The E. coli BtuCD
           protein is an ABC transporter mediating vitamin B12
           uptake.  The two ATP-binding cassettes (BtuD) are in
           close contact with each other, as are the two
           membrane-spanning subunits (BtuC); this arrangement is
           distinct from that observed for the E. coli lipid
           flippase MsbA.  The BtuC subunits provide 20
           transmembrane helices grouped around a translocation
           pathway that is closed to the cytoplasm by a gate
           region, whereas the dimer arrangement of the BtuD
           subunits resembles the ATP-bound form of the Rad50 DNA
           repair enzyme.  A prominent cytoplasmic loop of BtuC
           forms the contact region with the ATP-binding cassette
           and represent a conserved motif among the ABC
           transporters..
          Length = 180

 Score =  128 bits (324), Expect = 1e-30
 Identities = 71/219 (32%), Positives = 108/219 (49%), Gaps = 39/219 (17%)

Query: 15  SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG 74
            V NL++    R +L++++L I  GEI+G++G +G GKS L++ + GL+   SGE+ + G
Sbjct: 1   EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60

Query: 75  EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKI 134
           + L     K+    + K+  + Q  AL               E L L A L +   +   
Sbjct: 61  KDLASLSPKE---LARKIAYVPQ--AL---------------ELLGL-AHLADRPFNE-- 97

Query: 135 AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194
                           LSGG  +RV LARALA +P +L LDEPTS LD     E  +LL 
Sbjct: 98  ----------------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141

Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
           +L    G +V M+ HDLN      +RV +++   I+ +G
Sbjct: 142 RLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180


>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
           transport system.  Phosphonates are a class of
           organophosphorus compounds characterized by a chemically
           stable carbon-to-phosphorus (C-P) bond.  Phosphonates
           are widespread among naturally occurring compounds in
           all kingdoms of wildlife, but only procaryotic
           microorganisms are able to cleave this bond.  Certain
           bacteria such as E. coli can use alkylphosphonates as a
           phosphorus source.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 241

 Score =  127 bits (322), Expect = 2e-30
 Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 9/235 (3%)

Query: 14  LSVRNLTIELNN-RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           + V NL+    N +  L +++L I  GE + +IG SG GKS L+R + GL+   SG V +
Sbjct: 1   IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE--HIV 130
            G  +N  KGK       ++G++FQ   L   ++V EN+        +    L       
Sbjct: 61  DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE 120

Query: 131 HTKIAI-----VGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
             + A+     VGL  + A     QLSGG  +RV++ARAL   P L+  DEP + LDP +
Sbjct: 121 EKQRALAALERVGL-LDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPAS 179

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
           + +   LL ++    G++V +  H ++      +R+  ++   I+ +G  +++ D
Sbjct: 180 SRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD 234


>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
           [Carbohydrate transport and metabolism].
          Length = 338

 Score =  127 bits (321), Expect = 3e-30
 Identities = 77/226 (34%), Positives = 115/226 (50%), Gaps = 9/226 (3%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L ++N+     +  +L ++NLDI  GE + ++G SG GKS L+R I GL    SGE+ + 
Sbjct: 4   LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILID 63

Query: 74  GEHLN-LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
           G  +  L   K+  A       +FQ+ AL+  MTV ENI+  +K    +P   I+  V  
Sbjct: 64  GRDVTDLPPEKRGIAM------VFQNYALYPHMTVYENIAFGLK-LRGVPKAEIDKRVKE 116

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
              ++GL     N  P QLSGG  +RV+LARAL   P +  LDEP S LD          
Sbjct: 117 VAKLLGLEHL-LNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE 175

Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           + KL   LG +   +THD    ++  +R+ V+    I + GT  ++
Sbjct: 176 IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221


>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
           division and chromosome partitioning].
          Length = 223

 Score =  125 bits (316), Expect = 1e-29
 Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 4/207 (1%)

Query: 24  NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83
             R  L +++  I +GE + + G SG GKS L++ I G      G++ V G  L+  KG+
Sbjct: 13  GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGR 72

Query: 84  QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143
           +      ++GV+FQ   L    TV EN+++P+   +  P   I   V   + +VGL    
Sbjct: 73  EIPFLRRQIGVVFQDFRLLPDRTVYENVALPL-RVIGKPPREIRRRVSEVLDLVGLK-HK 130

Query: 144 ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLS 203
           A  +P QLSGG  +RV++ARA+   P +L  DEPT  LDP  + E  +L  ++ + LG +
Sbjct: 131 ARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI-NRLGTT 189

Query: 204 VYMITHDLNNLISTCNRVAVIQKKGIM 230
           V M THDL  L++      +  + G +
Sbjct: 190 VLMATHDL-ELVNRMRHRVLALEDGRL 215


>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
           ModC is an ABC-type transporter and the ATPase component
           of a molybdate transport system that also includes the
           periplasmic binding protein ModA and the membrane
           protein ModB.  ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 235

 Score =  125 bits (316), Expect = 1e-29
 Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L V NL+ +      L N++L++ RG+   ++G +G+GKS+L+  I G I   SG++ + 
Sbjct: 1   LKVENLSKDWKE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59

Query: 74  GEHL-NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
           G+ + NL   K++ ++      + Q+ ALF  MTV +NI+  +K    +    IE  V  
Sbjct: 60  GKDITNLPPEKRDISY------VPQNYALFPHMTVYKNIAYGLK-KRKVDKKEIERKVLE 112

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
              ++G+     N  P  LSGG  +RV++ARAL ++P +L LDEP S LD    E+  + 
Sbjct: 113 IAEMLGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE 171

Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           L K+R   G++V  +THD     +  ++VA++    +++ G   ++
Sbjct: 172 LKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217


>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 253

 Score =  125 bits (316), Expect = 1e-29
 Identities = 66/213 (30%), Positives = 121/213 (56%), Gaps = 15/213 (7%)

Query: 8   SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI---LGLIP 64
           + +   + VR+L +   ++  L +INLDI + ++  +IG SG GKS L+R +     LIP
Sbjct: 2   TMKIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP 61

Query: 65  --RVSGEVKVLGEHLNLAKGKQN-FAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL 121
             RV GEV + G+  N+   K +      ++G++FQ    F  M++ +N++  ++ H   
Sbjct: 62  GARVEGEVLLDGK--NIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK 118

Query: 122 PADLIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178
             +L + IV + +    L  E  + +      LSGG  +R+ +ARALA+ P++L +DEPT
Sbjct: 119 DKEL-DEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177

Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
           S LDPI+  + ++L+ +L+     ++ ++TH++
Sbjct: 178 SALDPISTLKIEELITELKKK--YTIVIVTHNM 208


>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 259

 Score =  125 bits (314), Expect = 2e-29
 Identities = 68/206 (33%), Positives = 110/206 (53%), Gaps = 10/206 (4%)

Query: 19  LTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLN 78
           L+ E   R  L +++L I  GE++ V+G SG GK+ L+  I G +    G +++      
Sbjct: 11  LSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQL------ 64

Query: 79  LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVG 138
              G++     A+ GV+FQ+ AL   + V +N++  ++    +       I H  +A+VG
Sbjct: 65  --NGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLR-GIEKAQRREIAHQMLALVG 121

Query: 139 LPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198
           L     +   +QLSGGM +RV +ARALA++P LL LDEP   LD +  E+  +LL+ L  
Sbjct: 122 LE-GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180

Query: 199 SLGLSVYMITHDLNNLISTCNRVAVI 224
             G  V +ITHD+   +    R+ V+
Sbjct: 181 ETGKQVLLITHDIEEALFLATRLVVL 206


>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
           transporter, MalK.  ATP binding cassette (ABC) proteins
           function from bacteria to human, mediating the
           translocation of substances into and out of cells or
           organelles.  ABC transporters contain two
           transmembrane-spanning domains (TMDs) or subunits and
           two nucleotide binding domains (NBDs) or subunits that
           couple transport to the hydrolysis of ATP.  In the
           maltose transport system, the periplasmic maltose
           binding protein (MBP) stimulates the ATPase activity of
           the membrane-associated transporter, which consists of
           two transmembrane subunits, MalF and MalG, and two
           copies of the ATP binding subunit, MalK, and becomes
           tightly bound to the transporter in the catalytic
           transition state, ensuring that maltose is passed to the
           transporter as ATP is hydrolyzed..
          Length = 213

 Score =  123 bits (310), Expect = 6e-29
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 7/220 (3%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           + + N+T    N   L+++NLDI  GE + ++G SG GK+  +R I GL    SG + + 
Sbjct: 1   VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           G  +     K        + ++FQ+ AL+  MTV +NI+  +K    +P D I+  V   
Sbjct: 61  GRDVTDLPPKDR-----DIAMVFQNYALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREV 114

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
             ++ +     +  P QLSGG  +RV+L RA+  +P +  +DEP S LD     +    L
Sbjct: 115 AELLQIE-HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL 173

Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
            +L+  LG +   +THD    ++  +R+AV+    I + G
Sbjct: 174 KRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213


>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
           family are similar to members of the Mj1267_LivG family,
           which is involved in the transport of branched-chain
           amino acids.  The genes yhbG and yhbN are located in a
           single operon and may function together in cell envelope
           during biogenesis.  YhbG is the putative ATP-binding
           cassette component and YhbN is the putative
           periplasmic-binding protein.  Depletion of each gene
           product leads to growth arrest, irreversible cell damage
           and loss of viability in E. coli.  The YhbG homolog
           (NtrA) is essential in Rhizobium meliloti, a symbiotic
           nitrogen-fixing bacterium..
          Length = 232

 Score =  122 bits (309), Expect = 6e-29
 Identities = 70/239 (29%), Positives = 124/239 (51%), Gaps = 11/239 (4%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L   NL+     R ++N ++L + +GEI+G++G +G GK+     I+GL+   SG++ + 
Sbjct: 1   LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60

Query: 74  GEHLNLAKGKQNFAFSAKLGV--LFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131
           G+ +     K      A+LG+  L Q  ++F  +TV+ENI + + E   L     E  + 
Sbjct: 61  GQDIT----KLPMHKRARLGIGYLPQEASIFRKLTVEENI-LAVLEIRGLSKKEREEKLE 115

Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
             +    +           LSGG  +RV +ARALA +P  L LDEP +G+DPIA ++  K
Sbjct: 116 ELLEEFHITH-LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQK 174

Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYF 250
           ++  L+   G+ V +  H++   +S  +R  +I +  ++ EGT  +I    +  +R  +
Sbjct: 175 IIKILKDR-GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA--ANELVRKVY 230


>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
           ATPase components [General function prediction only].
          Length = 501

 Score =  122 bits (307), Expect = 1e-28
 Identities = 63/218 (28%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           E  L +R +T      +  ++++L + +GEI  ++G +G GKS LM+ + GL    SGE+
Sbjct: 2   EPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI--SMPIKEHLNLPADLIEH 128
           +V G+ + +   +   A    +G++ QH  L  ++TV ENI   +   +   +       
Sbjct: 62  RVDGKEVRIKSPRD--AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA 119

Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188
            +       GLP +    +   LS G  +RV + +AL     LL LDEPT+ L P  A+E
Sbjct: 120 RIKELSERYGLPVDPDAKVA-DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE 178

Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226
             ++L +L    G ++  ITH L  +++  +RV V+++
Sbjct: 179 LFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVLRR 215



 Score = 97.9 bits (244), Expect = 2e-21
 Identities = 64/241 (26%), Positives = 116/241 (48%), Gaps = 18/241 (7%)

Query: 11  EKILSVRNLTIELNNRII-LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69
           E +L V +L+++    +  + +++ ++  GEI+G+ G +G G+S L+  I GL    SG 
Sbjct: 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGR 314

Query: 70  VKVLGEHLNLAKGKQNFAFSAKLGVLF------QHGALFSSMTVQENISM------PIKE 117
           + + G+      G+ +     +LG+ +       HG L   +++ EN+ +      P   
Sbjct: 315 ILLNGKD---VLGRLSPRERRRLGLAYVPEDRHGHG-LVLDLSLAENLVLGRHDKKPFSR 370

Query: 118 HLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEP 177
              L    I       I    +   + +     LSGG  +++ LAR LA  PDLL   +P
Sbjct: 371 GGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQP 430

Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISD 237
           T GLD  A E   + L++LR + G +V +I+ DL+ ++   +R+AVI +  I+      +
Sbjct: 431 TRGLDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489

Query: 238 I 238
            
Sbjct: 490 A 490


>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
           of a variety of lipid compounds.  Mutations of members
           of ABCA subfamily are associated with human genetic
           diseases, such as, familial high-density lipoprotein
           (HDL) deficiency, neonatal surfactant deficiency,
           degenerative retinopathies, and congenital
           keratinization disorders.  The ABCA1 protein is involved
           in disorders of cholesterol transport and high-density
           lipoprotein (HDL) biosynthesis.  The ABCA4 (ABCR)
           protein transports vitamin A derivatives in the outer
           segments of photoreceptor cells, and therefore, performs
           a crucial step in the visual cycle.  The ABCA genes are
           not present in yeast.  However, evolutionary studies of
           ABCA genes indicate that they arose as transporters that
           subsequently duplicated and that certain sets of ABCA
           genes were lost in different eukaryotic lineages..
          Length = 220

 Score =  119 bits (301), Expect = 5e-28
 Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 14/229 (6%)

Query: 14  LSVRNLTIELNN--RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
           L +RNLT       +  +++++L++ +GEI G++G +G GK+  ++ + G +   SG   
Sbjct: 1   LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM--PIKEHLNLPADLIEHI 129
           + G  +         A    LG   Q  ALF  +TV+E++     +K    LP   I+  
Sbjct: 61  INGYSIR----TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEE 113

Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189
           V   + ++GL  + AN     LSGGM +++SLA AL   P +L LDEPTSGLDP +    
Sbjct: 114 VELLLRVLGLTDK-ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI 172

Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
             L++++R   G S+ + TH ++   + C+R+A++    +   G+  ++
Sbjct: 173 WDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219


>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
           systems, ATPase component [Amino acid transport and
           metabolism].
          Length = 237

 Score =  119 bits (299), Expect = 1e-27
 Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 12/243 (4%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
             +L V NL+        L  ++L++ RGEI+ ++G +G GK+ L++ I+GL+   SG +
Sbjct: 1   APMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130
              GE  ++     +      +  + +   +F  +TV+EN+ +             E   
Sbjct: 61  IFDGE--DITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY-----ARRDKEAQE 113

Query: 131 HTKIAIVGLPP---ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187
                +  L P   E  N     LSGG  + +++ARAL   P LL LDEP+ GL P   E
Sbjct: 114 RDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 173

Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247
           E  + + +LR   G+++ ++  +    +   +R  V++   I+  GT +++    DP +R
Sbjct: 174 EIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAEL--LADPDVR 231

Query: 248 SYF 250
             +
Sbjct: 232 EAY 234


>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
           component [General function prediction only].
          Length = 243

 Score =  119 bits (299), Expect = 1e-27
 Identities = 71/251 (28%), Positives = 126/251 (50%), Gaps = 31/251 (12%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
            L   NL      R ++N+++L++  GEI+G++G +G GK+     I+GL+   SG++ +
Sbjct: 4   TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILL 63

Query: 73  LGEHLNLAKGKQNFAFSAKLGV--LFQHGALFSSMTVQENI---------SMPIKEHLNL 121
             E +     K      A+LG+  L Q  ++F  +TV++NI          +   E    
Sbjct: 64  DDEDIT----KLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE 119

Query: 122 PADLIE--HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTS 179
              L+E  HI H +           +   + LSGG  +RV +ARALA +P  + LDEP +
Sbjct: 120 LDALLEEFHITHLR-----------DSKAYSLSGGERRRVEIARALAANPKFILLDEPFA 168

Query: 180 GLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239
           G+DPIA  +  +++  L+   G+ V +  H++   +  C+R  +I    ++ EG+  +IV
Sbjct: 169 GVDPIAVIDIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227

Query: 240 DSNDPWIRSYF 250
             N+  +R  +
Sbjct: 228 --NNEDVRRVY 236


>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
           ABC transporters involved in peptide antibiotic
           resistance.  Bacitracin is a dodecapeptide antibiotic
           produced by B. licheniformis and B. subtilis.  The
           synthesis of bacitracin is non-ribosomally catalyzed by
           a multienzyme complex BcrABC.  Bacitracin has potent
           antibiotic activity against gram-positive bacteria.  The
           inhibition of peptidoglycan biosynthesis is the best
           characterized bacterial effect of bacitracin.  The
           bacitracin resistance of B. licheniformis is mediated by
           the ABC transporter Bcr which is composed of two
           identical BcrA ATP-binding subunits and one each of the
           integral membrane proteins, BcrB and BcrC.  B. subtilis
           cells carrying bcr genes on high-copy number plasmids
           develop collateral detergent sensitivity, a similar
           phenomenon in human cells with overexpressed multi-drug
           resistance P-glycoprotein..
          Length = 208

 Score =  117 bits (295), Expect = 3e-27
 Identities = 67/220 (30%), Positives = 121/220 (55%), Gaps = 12/220 (5%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L   +LT     + +L++I+L + +GEI G +G +G GK+  M+ ILGLI   SGE+   
Sbjct: 1   LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD 60

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           G+       ++N     ++G L +    + ++T +EN+ +  +        + +  +   
Sbjct: 61  GK-----SYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL-----GIRKKRIDEV 110

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
           + +VGL  ++A       S GM +R+ +A AL  +PDLL LDEPT+GLDP   +E  +L+
Sbjct: 111 LDVVGL-KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELI 169

Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
           + LR   G++V + +H L+ +    +R+ +I K  +++EG
Sbjct: 170 LSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208


>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
           LIV-I bacterial ABC-type two-component transport system
           that imports neutral, branched-chain amino acids.  The
           E. coli branched-chain amino acid transporter comprises
           a heterodimer of ABC transporters (LivF and LivG), a
           heterodimer of six-helix TM domains (LivM and LivH), and
           one of two alternative soluble periplasmic substrate
           binding proteins (LivK or LivJ).  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules..
          Length = 222

 Score =  117 bits (295), Expect = 3e-27
 Identities = 58/229 (25%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L V NL        IL  ++L +  GEI+ ++G +G GK+ L++ I+GL+P  SG ++  
Sbjct: 1   LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60

Query: 74  GEHLNLAKGKQNFAFSAKLGVLF--QHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131
           G  +      +     A+ G+ +  +   +F  +TV+EN+ +             +  + 
Sbjct: 61  GRDITGLPPHE----RARAGIGYVPEGRRIFPELTVEENLLLGAY---ARRRAKRKARLE 113

Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
               +     E    +   LSGG  + +++ARAL   P LL LDEP+ GL P   EE  +
Sbjct: 114 RVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173

Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
            + +LR   G+++ ++  +    +   +R  V+++  ++ EGT ++++ 
Sbjct: 174 AIRELR-DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221


>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
           lysophospholipase L1 biosynthesis, ATPase component
           [Secondary metabolites biosynthesis, transport, and
           catabolism].
          Length = 228

 Score =  116 bits (291), Expect = 8e-27
 Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 8/216 (3%)

Query: 10  EEKILSVRNLTIELNNRI----ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR 65
            E I+ V +L+  +        IL  + L + RGE + ++G SG+GKS L+  + GL   
Sbjct: 3   AENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP 62

Query: 66  VSGEVKVLGEHLNLAKGKQNFAFSAK-LGVLFQHGALFSSMTVQENISMPIKEHLNLPAD 124
            SGEV++LG+ L+        A  A+ +G +FQ   L  ++T  EN+++P+ E     + 
Sbjct: 63  SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPL-ELRGESSA 121

Query: 125 LIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184
                    +  VGL  +     P QLSGG  +RV+LARA A  PD+LF DEPT  LD  
Sbjct: 122 DSRAGAKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180

Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNR 220
             ++   LL  L    G ++ ++THD   L + C+R
Sbjct: 181 TGDKIADLLFALNRERGTTLVLVTHDP-QLAARCDR 215


>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
           [Carbohydrate transport and metabolism].
          Length = 500

 Score =  114 bits (287), Expect = 3e-26
 Identities = 66/246 (26%), Positives = 113/246 (45%), Gaps = 24/246 (9%)

Query: 7   PSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV 66
               E +L VRNL+        + +++  +  GEILG+ G  G G++ L R + G  P  
Sbjct: 257 EGIGEPVLEVRNLSG----GGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS 312

Query: 67  SGEVKVLGEHLNLAKGKQNFAFSAKLGVLF-----QHGALFSSMTVQENISMP----IKE 117
           SGE+ + G+ + +     +   + K G+ +     +   L   M++ ENI++        
Sbjct: 313 SGEILLDGKPVRIR----SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSR 368

Query: 118 HLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEP 177
              +       +    I  + +   +       LSGG  ++V LAR LA DP +L LDEP
Sbjct: 369 RGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEP 428

Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISD 237
           T G+D  A  E  +L+ +L    G ++ MI+ +L  L+   +R+ V      M+EG I  
Sbjct: 429 TRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILV------MREGRIVG 481

Query: 238 IVDSND 243
            +D  +
Sbjct: 482 ELDREE 487



 Score =  112 bits (282), Expect = 8e-26
 Identities = 56/221 (25%), Positives = 109/221 (49%), Gaps = 7/221 (3%)

Query: 7   PSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV 66
                 +L +R ++        L+ ++L +  GE+  ++G +G GKS LM+ + G+ P  
Sbjct: 2   TMSTPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD 61

Query: 67  SGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM---PIKEHLNLPA 123
           SGE+ + G+ +  +  +   A +A +  + Q  +L  +++V ENI +   P +    +  
Sbjct: 62  SGEILIDGKPVAFSSPRD--ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDR 119

Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183
             +       +A +GL  +   L+   LS    + V +ARAL+ D  +L LDEPT+ L  
Sbjct: 120 KAMRRRARELLARLGLDIDPDTLV-GDLSIAQRQMVEIARALSFDARVLILDEPTAALTV 178

Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224
              E    L+ +L+   G+++  I+H L+ +    +R+ V+
Sbjct: 179 KETERLFDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVL 218


>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
           superfamily [Secondary metabolites biosynthesis,
           transport and catabolism].
          Length = 1228

 Score =  113 bits (284), Expect = 6e-26
 Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 30/253 (11%)

Query: 8   SQEEKILSVRNLTIELNN----------RIILNNINLDILRGEILGVIGSSGTGKSILMR 57
           S+  ++LS     IE  N            IL  ++L I  G+ + ++G SG+GKS L++
Sbjct: 338 SKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQ 397

Query: 58  GILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKE 117
            +       SGEV + GE +   +        +++G++ Q   LF+  T++ENI      
Sbjct: 398 LLARFYDPTSGEVLIDGEDI---RNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRY---- 449

Query: 118 HLNLPADLIEHIVHTKIA-----IVGLPPETANLMPF---QLSGGMIKRVSLARALAIDP 169
                A   E     K A     I+ LP     L+     QLSGG  +R+++ARAL  +P
Sbjct: 450 -GKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNP 508

Query: 170 DLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGI 229
            +L LDE TS LD  +     + L K   S G +  ++ H L + I   +++AV+++  I
Sbjct: 509 KILLLDEATSALDAESERVVQEALDKA--SKGRTTIVVAHRL-STIRNADKIAVMEEGKI 565

Query: 230 MKEGTISDIVDSN 242
           +++GT  +++   
Sbjct: 566 VEQGTHDELIALG 578



 Score = 85.3 bits (211), Expect = 2e-17
 Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 28/222 (12%)

Query: 25   NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR----VSGEVKVLGEHLNLA 80
            +  +LNN++L I  G+ + ++G SG+GKS     ++ L+ R     +G+VK+ G  +   
Sbjct: 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKST----VISLLERFYDPDAGKVKIDGVDI--- 1054

Query: 81   KGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA----- 135
            K         ++G++ Q   LF+  T++ENI+   +E         E I   K+A     
Sbjct: 1055 KDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSEE-----VSEEEIIEAAKLANAHNF 1108

Query: 136  IVGLPP--ETANLMP-FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
            I  LP   +T       QLSGG  +R+++ARA+  +P +L LDE TS LD  +     + 
Sbjct: 1109 ISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEA 1168

Query: 193  LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
            L +     G +  +I H L + I   + +AV++   ++++GT
Sbjct: 1169 LDRAM--EGRTTIVIAHRL-STIQNADVIAVLKNGKVVEQGT 1207


>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
           bacterial exporter complex that confers resistance to
           the antibiotics daunorubicin and doxorubicin.  In
           addition to DrrA, the complex includes an integral
           membrane protein called DrrB.  DrrA belongs to the ABC
           family of transporters and shares sequence and
           functional similarities with a protein found in cancer
           cells called  P-glycoprotein.  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region in
           addition to the Walker A motif/P-loop and Walker B motif
           commonly found in a number of ATP- and GTP-binding and
           hydrolyzing proteins..
          Length = 220

 Score =  113 bits (283), Expect = 7e-26
 Identities = 63/223 (28%), Positives = 115/223 (51%), Gaps = 6/223 (2%)

Query: 16  VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE 75
           V NL  +  +   +  ++  + RGEI G++G +G GK+  ++ +  L+   SG   V G 
Sbjct: 3   VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGH 62

Query: 76  HLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA 135
            +     ++      ++G++FQ  ++   +T  EN+ +  + +  +P       +   + 
Sbjct: 63  DVV----REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY-GVPGAERRERIDELLD 117

Query: 136 IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIK 195
            VGL  E A+ +    SGGM +R+ +AR+L   P++LFLDEPT GLDP       + + K
Sbjct: 118 FVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEK 176

Query: 196 LRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           L+   G+++ + TH +      C+RVA+I    I+ EGT  ++
Sbjct: 177 LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219


>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
           nucleotide-binding protein that binds FtsX to form a
           heterodimeric ATP-binding cassette (ABC)-type
           transporter that associates with the bacterial inner
           membrane.  The FtsE/X transporter is thought to be
           involved in cell division and is important for assembly
           or stability of the septal ring..
          Length = 214

 Score =  112 bits (282), Expect = 8e-26
 Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 3/203 (1%)

Query: 24  NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83
           N    L+ IN+ I  GE + ++G SG GKS L++ I       SG ++V G+ ++  +G+
Sbjct: 12  NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR 71

Query: 84  QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143
                  K+GV+FQ   L     V EN++  + E   +P   I   V   + +VGL    
Sbjct: 72  AIPYLRRKIGVVFQDFRLLPDRNVYENVAFAL-EVTGVPPREIRKRVPAALELVGL-SHK 129

Query: 144 ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLS 203
              +P +LSGG  +RV++ARA+   P +L  DEPT  LDP    E   LL K+ +  G +
Sbjct: 130 HRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI-NKAGTT 188

Query: 204 VYMITHDLNNLISTCNRVAVIQK 226
           V + TH    + +T +RV  +++
Sbjct: 189 VVVATHAKELVDTTRHRVIALER 211


>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
           [Coenzyme metabolism].
          Length = 231

 Score =  112 bits (281), Expect = 1e-25
 Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 9/213 (4%)

Query: 33  NLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE-HLNLAKGKQNFAFSAK 91
           +L +  GEI+ ++G SG GKS L+  I G     SGE+ + G  H      ++  +    
Sbjct: 19  DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVS---- 74

Query: 92  LGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQL 151
             +LFQ   LF+ +TV +NI + +   L L A+  E +     A VGL      L P +L
Sbjct: 75  --MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAA-AAQVGLAGFLKRL-PGEL 130

Query: 152 SGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
           SGG  +RV+LAR L  +  +L LDEP S LDP    E   L+ +L     +++ M+TH  
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP 190

Query: 212 NNLISTCNRVAVIQKKGIMKEGTISDIVDSNDP 244
            +     +RV  +    I  +G+  +++     
Sbjct: 191 EDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223


>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
           carbohydrate uptake proteins that transport only
           monosaccharides (Monos).  The Carb_Monos family is
           involved in the uptake of monosaccharides, such as
           pentoses (such as xylose, arabinose, and ribose) and
           hexoses (such as xylose, arabinose, and ribose), that
           cannot be broken down to simple sugars by hydrolysis.
           In members of Carb_Monos family the single hydrophobic
           gene product forms a homodimer, while the ABC protein
           represents a fusion of two nucleotide-binding domains.
           However, it is assumed that two copies of the ABC
           domains are present in the assembled transporter..
          Length = 182

 Score =  111 bits (280), Expect = 2e-25
 Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 54/230 (23%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           E +L VR L+++      + +++ ++  GEI+G+ G  G G++ L   + GL P  SGE+
Sbjct: 2   EPVLEVRGLSVKGA----VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEI 57

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVLF-----QHGALFSSMTVQENISMPIKEHLNLPADL 125
            + G+ +     +     + + G+ +     +   L   ++V ENI++            
Sbjct: 58  TLDGKPVTRRSPRD----AIRAGIAYVPEDRKREGLVLDLSVAENIALSS---------- 103

Query: 126 IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
                                    LSGG  ++V LAR LA DP +L LDEPT G+D  A
Sbjct: 104 ------------------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA 139

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235
             E  +L+ +L  + G +V +I+ +L+ L+  C+R+ V      M EG I
Sbjct: 140 KAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILV------MYEGRI 182


>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 256

 Score =  111 bits (278), Expect = 3e-25
 Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 12/231 (5%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L V +L        +L  ++L    G+++ +IGSSG+GKS  +R I  L    +G ++V 
Sbjct: 7   LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVN 66

Query: 74  GEHLNLAKGKQNFAFSA----------KLGVLFQHGALFSSMTVQENISMPIKEHLNLPA 123
           GE + L + K      A          +LG++FQH  L+S MTV EN+       L +  
Sbjct: 67  GEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSK 126

Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183
                     +A VG+  E A+  P  LSGG  +RV++ARALA++P+++  DEPTS LDP
Sbjct: 127 AEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP 185

Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
               E  K++  L    G ++ ++TH++       + V  + +  I +EG 
Sbjct: 186 ELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGP 235


>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
           nucleotide-binding domain; ABC transporters are a large
           family of proteins involved in the transport of a wide
           variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide-binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 157

 Score =  110 bits (275), Expect = 6e-25
 Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 57/212 (26%)

Query: 15  SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG 74
            + NL+     R  L+N++L +  GEI+ ++G +G+GKS L+R I GL+   SGE+ + G
Sbjct: 1   EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60

Query: 75  EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKI 134
           + +                                             A L    +  +I
Sbjct: 61  KDI---------------------------------------------AKLPLEELRRRI 75

Query: 135 AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194
             V            QLSGG  +RV+LARAL ++PDLL LDEPTSGLDP + E   +LL 
Sbjct: 76  GYV-----------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124

Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226
           +L    G +V ++THD        +RV V++ 
Sbjct: 125 ELAEE-GRTVIIVTHDPELAELAADRVIVLKD 155


>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
           transporter and the ATPase component of a molybdate
           transport system that also includes the periplasmic
           binding protein ModA and the membrane protein ModB. ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides and more complex organic
           molecules. The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 214

 Score =  109 bits (273), Expect = 1e-24
 Identities = 71/211 (33%), Positives = 111/211 (52%), Gaps = 6/211 (2%)

Query: 18  NLTIELNNRIILNNINLDI-LRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEH 76
            L +++  R+    + +D  L  E+ G+ G+SG GKS L+R I GL     G + + G  
Sbjct: 1   MLCVDIEKRLPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTV 60

Query: 77  LNLAKGKQNFAFSA-KLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA 135
           L  ++ K N      K+G++FQ  ALF  + V+EN++  +K   N         V   + 
Sbjct: 61  LFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNRE---DRISVDELLD 117

Query: 136 IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIK 195
           ++GL     N  P QLSGG  +RV+LARALA  P+LL LDEP S LD     +    L +
Sbjct: 118 LLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176

Query: 196 LRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226
           ++ +L + V  +THDL+      +R+ V++ 
Sbjct: 177 IKKNLNIPVIFVTHDLSEAEYLADRIVVMED 207


>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
           ATPase domains [General function prediction only].
          Length = 530

 Score =  108 bits (271), Expect = 1e-24
 Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 25/231 (10%)

Query: 12  KILSVRNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
            +L   N++      R++L +++  I RG+ + ++G +G GKS L++ + G +  +SG V
Sbjct: 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130
           KV GE + +    Q+               L    TV E +S           D  E  V
Sbjct: 380 KV-GETVKIGYFDQHRD------------ELDPDKTVLEELS-------EGFPDGDEQEV 419

Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190
              +   G   E        LSGG   R+ LA+ L   P+LL LDEPT+ LD  + E  +
Sbjct: 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE 479

Query: 191 KLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
           + L+        +V +++HD   L     R+ +++ K    EG   D ++ 
Sbjct: 480 EALLDFEG----TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQ 526



 Score = 96.9 bits (241), Expect = 5e-21
 Identities = 62/238 (26%), Positives = 103/238 (43%), Gaps = 49/238 (20%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           ++++ NL++   +R +L N++L +  GE +G++G +G GKS L++ + G +   SGEV  
Sbjct: 3   MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL------- 125
                             ++G L Q   L    TV + +     E   L A+L       
Sbjct: 63  PK--------------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL 108

Query: 126 ----------------------IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLAR 163
                                 +E      +  +G P E   +    LSGG  +RV+LAR
Sbjct: 109 ADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVS--SLSGGWRRRVALAR 166

Query: 164 ALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRV 221
           AL  +PDLL LDEPT+ LD  + E  +  L +       +V +++HD   L +    +
Sbjct: 167 ALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG----TVIVVSHDRYFLDNVATHI 220


>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
           system, ATPase component.  The biological function of
           this family is not well characterized, but display ABC
           domains similar to members of ABCA subfamily.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 211

 Score =  107 bits (270), Expect = 2e-24
 Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 17/224 (7%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L + NLT     +  L+ ++L +  G + G++G +G GK+ LMR +  L P  SG +++ 
Sbjct: 1   LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHL----NLPADLIEHI 129
           G+ +     KQ      ++G L Q   ++ + TV+E +     +++     +P+  ++  
Sbjct: 60  GQDV----LKQPQKLRRRIGYLPQEFGVYPNFTVREFL-----DYIAWLKGIPSKEVKAR 110

Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189
           V   + +V L  + A      LSGGM +RV +A+AL  DP +L +DEPT+GLDP     F
Sbjct: 111 VDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169

Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
             LL +L       V + TH + ++ S CN+VAV+ K  ++ EG
Sbjct: 170 RNLLSEL--GEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211


>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
           an N-terminal double-glycine peptidase domain [Defense
           mechanisms].
          Length = 709

 Score =  106 bits (267), Expect = 4e-24
 Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 32/251 (12%)

Query: 7   PSQEEKILSVRNLTIELNNR--IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP 64
             + +  +   N++         +L +++L+I  GE + ++G SG+GKS L++ +LGL  
Sbjct: 465 LPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK 524

Query: 65  RVSGEVKVLG---EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL 121
              G + + G     ++LA  ++       +G + Q   LFS  +++ENI+      L  
Sbjct: 525 PQQGRILLDGVDLNDIDLASLRRQ------VGYVLQDPFLFSG-SIRENIA------LGN 571

Query: 122 PADLIEHIVHTKIAIVGLPPETANL----------MPFQLSGGMIKRVSLARALAIDPDL 171
           P    E I+     + G      NL              LSGG  +R++LARAL   P +
Sbjct: 572 PEATDEEIIE-AAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI 630

Query: 172 LFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMK 231
           L LDE TS LDP       + L+++    G +V +I H L + I + +R+ V+ +  I++
Sbjct: 631 LLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRL-STIRSADRIIVLDQGKIVE 687

Query: 232 EGTISDIVDSN 242
           +G+  +++   
Sbjct: 688 QGSHEELLAQG 698


>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 213

 Score =  105 bits (262), Expect = 2e-23
 Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 19/208 (9%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP---RVSGE 69
           +L ++N+++ L    +L N+N  I +GEI+ ++G SG GKS L+  ++G +      +GE
Sbjct: 2   MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61

Query: 70  VKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLI--- 126
           + +  + L++    Q      ++G+LFQ   LF  ++V +N+         LPA L    
Sbjct: 62  LWLNEQRLDMLPAAQR-----QIGILFQDALLFPHLSVGQNLL------FALPATLKGNA 110

Query: 127 -EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
             +  +  +   GL     +  P  LSGG   RV+L RAL   P  L LDEP S LD   
Sbjct: 111 RRNAANAALERSGLD-GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVAL 169

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNN 213
            ++F + +     + G+    +THDL +
Sbjct: 170 RDQFRQWVFSEVRAAGIPTVQVTHDLQD 197


>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 259

 Score =  104 bits (261), Expect = 2e-23
 Identities = 70/235 (29%), Positives = 109/235 (46%), Gaps = 14/235 (5%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           ++   NL+  L  R +L+ ++LD+  GE+L ++G +G GKS L++ + G +   SGEV +
Sbjct: 1   MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH--IV 130
            G  LN    +     +    VL Q+ +L    TVQE + M    H     +  E   I 
Sbjct: 61  NGVPLNSWPPE---ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPH-RSGREPEEDERIA 116

Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALA------IDPDLLFLDEPTSGLDPI 184
              +A   L           LSGG  +RV LAR LA           LFLDEPTS LD  
Sbjct: 117 AQALAATDLSGLAGRDYR-TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIA 175

Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239
                 +L  +L    G +V  + HDLN      +R+ ++ +  ++  G+  D++
Sbjct: 176 HQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229


>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
           transporters are involved in drug, peptide, and lipid
           export.  They belong to the subfamily C of the
           ATP-binding cassette (ABC) superfamily of transport
           proteins.  The ABCC subfamily contains transporters with
           a diverse functional spectrum that includes ion
           transport, cell surface receptor, and toxin secretion
           activities.  The MRP-like family, simlar to all ABC
           proteins, have a common four-domain core structure
           constituted by two membrane-spanning domains, each
           composed of six transmembrane (TM) helices, and two
           nucleotide-binding domains (NBD).  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 171

 Score =  104 bits (262), Expect = 2e-23
 Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 48/215 (22%)

Query: 14  LSVRNLTIELNNRI--ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
           +  +N++     R   +L +++L I  GE + ++G SG+GKS L++ +L L    SGE+ 
Sbjct: 1   IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131
           + G  L     +   +    +  + Q   LFS  T++ENI                    
Sbjct: 61  IDGVDLRDLDLE---SLRKNIAYVPQDPFLFS-GTIRENI-------------------- 96

Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
                              LSGG  +R+++ARAL  DP +L LDE TS LDP       +
Sbjct: 97  -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137

Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226
            L  L    G +V +I H L+ +    +R+ V+  
Sbjct: 138 ALRALAK--GKTVIVIAHRLSTIRD-ADRIIVLDD 169


>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
           resistance, nodulation, lipid transport, and bacteriocin
           and lantibiotic immunity.  In eubacteria and archaea,
           the typical organization consists of one ABC and one or
           two IMs.  Eukaryote systems of the ABCA subfamily
           display ABC domains strongly similar to this family.
           ABC transporters are a large family of proteins involved
           in the transport of a wide variety of different
           compounds, like sugars, ions, peptides and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region in addition to the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 210

 Score =  104 bits (261), Expect = 3e-23
 Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 24/220 (10%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L V N+T        L++I+  + +GEI G++G +G GK+  +R ILG+I   SGEV   
Sbjct: 1   LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI-------SMPIKEHLNLPADLI 126
           G+ L++A          ++G L +   L+  M V + +        +  +E      + +
Sbjct: 61  GKPLDIAARN-------RIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWL 113

Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186
           E         + L  E AN    +LS G  ++V    A+  DP+LL LDEP SGLDP+  
Sbjct: 114 ER--------LEL-SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNV 164

Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226
           E    ++ +L  + G +V + TH +  +   C+RV ++ K
Sbjct: 165 ELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNK 203


>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
           a cobalt transport family found in bacteria, archaea,
           and eukaryota.  The transition metal cobalt is an
           essential component of many enzymes and must be
           transported into cells in appropriate amounts when
           needed.  The CbiMNQO family ABC transport system is
           involved in cobalt transport in association with the
           cobalamin (vitamin B12) biosynthetic pathways.  Most
           cobalt (Cbi) transport systems possess a separate CbiN
           component, the cobalt-binding periplasmic protein, and
           they are encoded by the conserved gene cluster cbiMNQO. 
           Both the CbiM and CbiQ proteins are integral cytoplasmic
           membrane proteins, and the CbiO protein has the linker
           peptide and the Walker A and B motifs commonly found in
           the ATPase components of the ABC-type transport
           systems..
          Length = 205

 Score =  102 bits (256), Expect = 9e-23
 Identities = 64/216 (29%), Positives = 114/216 (52%), Gaps = 13/216 (6%)

Query: 15  SVRNLTIELN-NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
            + N++        IL++++LD+  GEI+ + G +G GK+ L + + GLI   SG + + 
Sbjct: 1   RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           G+ +   + +++  +  +  V +Q   LF+  +V+E + + +KE L+   +  E ++   
Sbjct: 61  GKPIKAKERRKSIGYVMQ-DVDYQ---LFTD-SVREELLLGLKE-LDAGNEQAETVL-KD 113

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
           + +  L        P  LSGG  +R+++A AL    DLL  DEPTSGLD    E   +L+
Sbjct: 114 LDLYAL----KERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169

Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGI 229
            +L  + G +V +ITHD   L   C+RV ++    I
Sbjct: 170 RELA-AQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204


>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
           [Amino acid transport and metabolism].
          Length = 242

 Score =  102 bits (254), Expect = 1e-22
 Identities = 74/244 (30%), Positives = 121/244 (49%), Gaps = 11/244 (4%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI--PRVSGEVK 71
           + +  +         L +I LD   GE L ++G SG GKS L+R +L L+  PR SG + 
Sbjct: 3   IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLR-VLNLLEMPR-SGTLN 60

Query: 72  VLGEHLNLAK---GKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128
           + G H + +K    K        +G++FQ   L+  +TVQEN+       L L  D    
Sbjct: 61  IAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALA 120

Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP-IAAE 187
                +  + L P  A+  P  LSGG  +RV++ARAL ++P +L  DEPT+ LDP I A+
Sbjct: 121 RAEKLLKRLRLKP-YADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179

Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247
                +IK     G++  ++TH++     T +RV  ++   I+++G  S   +      +
Sbjct: 180 IVS--IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFK 237

Query: 248 SYFN 251
           +Y +
Sbjct: 238 NYLS 241


>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
           [Energy production and conversion / Inorganic ion
           transport and metabolism].
          Length = 245

 Score =  101 bits (254), Expect = 2e-22
 Identities = 62/214 (28%), Positives = 113/214 (52%), Gaps = 15/214 (7%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           + +++ +   GEI G++G +G GK+ L+R I  L+   SG+V +  + ++  +       
Sbjct: 18  VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI--DGVDTVR--DPSFV 73

Query: 89  SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIV----GLPPETA 144
             K+GVLF    L++ +T +EN+    + +      L    +  +IA +     L  E  
Sbjct: 74  RRKIGVLFGERGLYARLTARENLKYFARLN-----GLSRKEIKARIAELSKRLQLL-EYL 127

Query: 145 NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSV 204
           +    + S GM ++V++ARAL  DP +L LDEPTSGLD     +F   + +L++  G +V
Sbjct: 128 DRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE-GRAV 186

Query: 205 YMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
              +H +  + + C+RV V+ K  ++ EG+I  +
Sbjct: 187 IFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220


>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
           cancer resistance protein) [Secondary metabolites
           biosynthesis, transport and catabolism].
          Length = 613

 Score =  100 bits (251), Expect = 3e-22
 Identities = 69/255 (27%), Positives = 122/255 (47%), Gaps = 22/255 (8%)

Query: 1   MQLNNIPSQEEKILSVRNLTIELNN-----RIILNNINLDILRGEILGVIGSSGTGKSIL 55
           +  + +P  E   LS RNLT+         + IL  ++     GE+L ++G SG+GK+ L
Sbjct: 13  LSFSELPYLEPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTL 72

Query: 56  MRGILGLIPR---VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI- 111
           +  + G +     +SGE+ + G   +    ++   +        Q   L  ++TV+E + 
Sbjct: 73  LNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQ------QDDVLLPTLTVRETLR 126

Query: 112 -SMPIKEHLNLPADLIEHIVHTKIAIVGL----PPETANLMPFQLSGGMIKRVSLARALA 166
            S  ++   +L  +     V   I+ +GL         N     LSGG  KRVS+A  L 
Sbjct: 127 FSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL 186

Query: 167 IDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLN-NLISTCNRVAVIQ 225
            DP +LFLDEPTSGLD  +A +  +LL +L  S G +V    H  +  L    +++ ++ 
Sbjct: 187 TDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLS 245

Query: 226 KKGIMKEGTISDIVD 240
           +  ++  G+  ++++
Sbjct: 246 EGEVVYSGSPRELLE 260


>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
           biosynthesis, fused ATPase and permease components
           [Energy production and conversion / Posttranslational
           modification, protein turnover, chaperones].
          Length = 573

 Score =  100 bits (250), Expect = 4e-22
 Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 28/244 (11%)

Query: 4   NNIPSQEEKILSVRNLTIEL--NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILG 61
           +   +   + L +RN++          L N NL + +GE + ++G SG+GKS L++ + G
Sbjct: 327 DEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386

Query: 62  LIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMP------- 114
                 G + + G  +     +   A    + VL Q   LFS  T+++N+ +        
Sbjct: 387 AWDPQQGSITLNGVEIASLDEQ---ALRETISVLTQRVHLFSG-TLRDNLRLANPDASDE 442

Query: 115 ----IKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPD 170
                 + + L   L+E         +G           +LSGG  +R++LARAL  D  
Sbjct: 443 ELWAALQQVGL-EKLLESAPDGLNTWLGEGGR-------RLSGGERRRLALARALLHDAP 494

Query: 171 LLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIM 230
           L  LDEPT GLDPI   +   LL    H+ G ++ M+TH L  L    +R+ V+    I+
Sbjct: 495 LWLLDEPTEGLDPITERQVLALL--FEHAEGKTLLMVTHRLRGL-ERMDRIIVLDNGKII 551

Query: 231 KEGT 234
           +EGT
Sbjct: 552 EEGT 555


>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 300

 Score = 99.6 bits (248), Expect = 7e-22
 Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 24/238 (10%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L +  +T    ++  ++NI+ ++  GEI G++G +G GK+   R ILGL+    GE+   
Sbjct: 3   LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN 62

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI-------SMPIKEHLNLPADLI 126
           G       G  +     ++G L +   L+  MTV++ +        MP  E        +
Sbjct: 63  G-------GPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWL 115

Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186
           E     ++ IVG   +       +LS G  +++    A+  +P+LL LDEP SGLDP+  
Sbjct: 116 E-----RLEIVGKKTKKIK----ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNV 166

Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDP 244
           E     + +L+   G ++   +H + ++   C+R+ +++K   +  GT+ DI  S   
Sbjct: 167 ELLKDAIFELKEE-GATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK 223


>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
           component of the protease secretion system PrtD, a
           60-kDa integral membrane protein sharing 37% identity
           with HlyB, the ABC component of the alpha-hemolysin
           secretion pathway, in the C-terminal domain.  They
           export degradative enzymes by using a type I protein
           secretion system and  lack an N-terminal signal peptide,
           but contain a C-terminal secretion signal.  The Type I
           secretion apparatus is made up of three components, an
           ABC transporter, a membrane fusion protein (MFP), and an
           outer membrane protein (OMP).  For the HlyA transporter
           complex, HlyB (ABC transporter) and HlyD (MFP) reside in
           the inner membrane of E. coli.  The OMP component is
           TolC, which is thought to interact with the MFP to form
           a continuous channel across the periplasm from the
           cytoplasm to the exterior.  HlyB belongs to the family
           of ABC transporters, which are ubiquitous, ATP-dependent
           transmembrane pumps or channels.  The spectrum of
           transport substrates ranges from inorganic ions,
           nutrients such as amino acids, sugars, or peptides,
           hydrophobic drugs, to large polypeptides, such as HlyA..
          Length = 173

 Score = 99.1 bits (247), Expect = 1e-21
 Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 47/218 (21%)

Query: 14  LSVRNLTIEL--NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
           L V N++         +L N++  I  GE L +IG SG+GKS L R ILGL+   SG V+
Sbjct: 1   LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131
           + G  ++     +       +G L Q   LFS  ++ ENI                    
Sbjct: 61  LDGADISQWDPNE---LGDHVGYLPQDDELFSG-SIAENI-------------------- 96

Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
                              LSGG  +R+ LARAL  +P +L LDEP S LD       ++
Sbjct: 97  -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137

Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGI 229
            +  L+ + G +  +I H     +++ +R+ V++   +
Sbjct: 138 AIAALK-AAGATRIVIAHRP-ETLASADRILVLEDGRV 173


>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 223

 Score = 98.2 bits (244), Expect = 2e-21
 Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 7/213 (3%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           +L ++ +     +  ILNNI+L +  GE + + G SG GKS L++ +  LI   SG +  
Sbjct: 3   LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLF 62

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
            GE ++  K +   A+  ++    Q  ALF   TV++N+  P +     P          
Sbjct: 63  EGEDVSTLKPE---AYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRPD---RAAALD 115

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
            +A   LP         +LSGG  +R++L R L   P +L LDE TS LD       +++
Sbjct: 116 LLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175

Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQ 225
           + +      ++V  ITHD +  I   ++V  +Q
Sbjct: 176 IHRYVREQNVAVLWITHDKDQAIRHADKVITLQ 208


>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
           the carbohydrate uptake proteins that transport only
           monosaccharides (Monos).  The Carb_Monos family is
           involved in the uptake of monosaccharides, such as
           pentoses (such as xylose, arabinose, and ribose) and
           hexoses (such as xylose, arabinose, and ribose), that
           cannot be broken down to simple sugars by hydrolysis.
           Pentoses include xylose, arabinose, and ribose.
           Important hexoses include glucose, galactose, and
           fructose.  In members of the Carb_monos family, the
           single hydrophobic gene product forms a homodimer while
           the ABC protein represents a fusion of two
           nucleotide-binding domains.  However, it is assumed that
           two copies of the ABC domains are present in the
           assembled transporter..
          Length = 163

 Score = 97.8 bits (244), Expect = 2e-21
 Identities = 58/211 (27%), Positives = 90/211 (42%), Gaps = 56/211 (26%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L +R +T        L+ ++L + RGE+  ++G +G GKS LM+ + GL    SGE+ V 
Sbjct: 1   LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           G+                                        +     P D         
Sbjct: 61  GK----------------------------------------EVSFASPRDARRA----G 76

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
           IA+V           +QLS G  + V +ARALA +  LL LDEPT+ L P   E   K++
Sbjct: 77  IAMV-----------YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVI 125

Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224
            +LR + G++V  I+H L+ +    +RV V+
Sbjct: 126 RRLR-AQGVAVIFISHRLDEVFEIADRVTVL 155


>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
           (EP) precursor transport, regulation of
           lipid-trafficking mechanisms, and pleiotropic drug
           resistance (DR).  DR is a well-described phenomenon
           occurring in fungi and shares several similarities with
           processes in bacteria and higher eukaryotes.  Compared
           to other members of the ABC transporter subfamilies, the
           ABCG transporter family is composed of proteins that
           have an ATP-binding cassette domain at the N-terminus
           and a TM (transmembrane) domain at the C-terminus..
          Length = 194

 Score = 97.9 bits (244), Expect = 2e-21
 Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 47/222 (21%)

Query: 14  LSVRNLTIELNN------RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI--PR 65
           LS RNLT+ + +      + +L N++     GE+  ++G SG GKS L+  + G      
Sbjct: 4   LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63

Query: 66  VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125
           VSGEV + G  L+        +F   +G + Q   L  ++TV+E +              
Sbjct: 64  VSGEVLINGRPLDK------RSFRKIIGYVPQDDILHPTLTVRETLMF------------ 105

Query: 126 IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
                             A L    LSGG  KRVS+A  L  +P LLFLDEPTSGLD  +
Sbjct: 106 -----------------AAKLR--GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLI-STCNRVAVIQK 226
           A +   LL +L  + G ++    H  ++ I    +++ ++ +
Sbjct: 147 ALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQ 187


>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
           component [General function prediction only].
          Length = 249

 Score = 97.6 bits (243), Expect = 3e-21
 Identities = 64/254 (25%), Positives = 118/254 (46%), Gaps = 20/254 (7%)

Query: 10  EEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69
              IL +  +++       LN+++  +  GE+  +IG +G GK+ LM  I G      GE
Sbjct: 2   NPIILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGE 61

Query: 70  VKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL-------- 121
           V +     +L K  ++    A +G  FQ   +F ++TV+EN+ + +    ++        
Sbjct: 62  V-LFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL 120

Query: 122 ---PADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178
                  I+ +    +A +GL  E  + +   LS G  + + +   LA DP LL LDEP 
Sbjct: 121 RAEERRRIDEL----LATIGLGDE-RDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPV 175

Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           +G+     E+  +LL  L      S+ ++ HD+  +    ++V V+ +  ++ EG++ D 
Sbjct: 176 AGMTDAETEKTAELLKSLAGK--HSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL-DE 232

Query: 239 VDSNDPWIRSYFNR 252
           V ++   I  Y  R
Sbjct: 233 VQNDPKVIEVYLGR 246


>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 258

 Score = 95.8 bits (238), Expect = 1e-20
 Identities = 64/247 (25%), Positives = 119/247 (48%), Gaps = 20/247 (8%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           + +LSV  L+          +++ D+  GE+LG++G SG+GK+ L++ I G +   +G V
Sbjct: 4   KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63

Query: 71  KVLG------EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQE--NI-----SMPIKE 117
                     +   +++ ++      + G + Q+      M V    NI     ++  + 
Sbjct: 64  TYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH 123

Query: 118 HLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEP 177
           + N+ A+  + +   +I       +  + +P   SGGM +R+ +AR L   P L+F+DEP
Sbjct: 124 YGNIRAEAQDWLEEVEI-----DLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEP 178

Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISD 237
           T GLD         LL  L   LGL+V ++THDL       +R+ V+++  +++ G    
Sbjct: 179 TGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDR 238

Query: 238 IVDSNDP 244
           ++D  DP
Sbjct: 239 VLD--DP 243


>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
           ATPase component of a bacterial ABC-type Na+ transport
           system called NatAB, which catalyzes ATP-dependent
           electrogenic Na+ extrusion without mechanically coupled
           to proton or K+ uptake.  NatB possess six putative
           membrane spanning regions at its C-terminus.  In B.
           subtilis, NatAB is inducible by agents such as ethanol
           and protonophores, which lower the protonmotive force
           across the membrane.  The closest sequence similarity to
           NatA is exhibited by DrrA of the two-component
           daunomycin- and doxorubicin-efflux system.  Hence, the
           functional NatAB is presumably assembled with two copies
           of the single ATP-binding protein and the single
           intergral membrane protein..
          Length = 236

 Score = 94.9 bits (236), Expect = 2e-20
 Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 33/219 (15%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L  I+  I +GEI+G IG +G GK+  ++ + GL+   SGEV+V G    L   K+   F
Sbjct: 37  LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG----LVPWKRRKKF 92

Query: 89  SAKLGVLF-QHGALFSSMTVQENISMPIKEHLNLP-----------ADL--IEHIVHTKI 134
             ++GV+F Q   L+  + V ++  + +    +LP           ++L  +E ++ T +
Sbjct: 93  LRRIGVVFGQKTQLWWDLPVIDSFYL-LAAIYDLPPARFKKRLDELSELLDLEELLDTPV 151

Query: 135 AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194
                          QLS G   R  +A AL  +P++LFLDEPT GLD +A E     L 
Sbjct: 152 R--------------QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLK 197

Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
           +     G +V + +H + ++ +   RV VI K  ++ +G
Sbjct: 198 EYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236


>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
           transporters homologous to the Drosophila white gene,
           which acts as a dimeric importer for eye pigment
           precursors.  The eye pigmentation of Drosophila is
           developed from the synthesis and deposition in the cells
           of red pigments, which are synthesized from guanine, and
           brown pigments, which are synthesized from tryptophan.
           The pigment precursors are encoded by the white, brown,
           and scarlet genes, respectively.  Evidence from genetic
           and biochemical studies suggest that the White and Brown
           proteins function as heterodimers to import guanine,
           while the White and Scarlet proteins function to import
           tryptophan.  However, a recent study also suggests that
           White may be involved in the transport of a metabolite,
           such as 3-hydroxykynurenine, across intracellular
           membranes.  Mammalian ABC transporters belonging to the
           White subfamily (ABCG1, ABCG5, and ABCG8) have been
           shown to be involved in the regulation of
           lipid-trafficking mechanisms in macrophages,
           hepatocytes, and intestinal mucosa cells.  ABCG1 (ABC8),
           the human homolog of the Drosophila white gene is
           induced in monocyte-derived macrophages during
           cholesterol influx mediated by acetylated low-density
           lipoprotein.  It is possible that human ABCG1 forms
           heterodimers with several heterologous partners..
          Length = 226

 Score = 94.5 bits (235), Expect = 3e-20
 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 15/180 (8%)

Query: 24  NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP---RVSGEVKVLGEHLNLA 80
               ILN+++L +  G+++ ++GSSG+GK+ L+  I G +      SG++   G+     
Sbjct: 18  KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77

Query: 81  KGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLP 140
           + ++  A+      + Q   L   +TV+E  ++     L LP    + I   ++  V L 
Sbjct: 78  QFQKCVAY------VRQDDILLPGLTVRE--TLTYTAILRLPRKSSDAIRKKRVEDVLLR 129

Query: 141 ----PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKL 196
                     +   +SGG  +RVS+A  L  DP +L LDEPTSGLD   A      L +L
Sbjct: 130 DLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL 189


>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
           central component of the secretion machinery that
           translocates the toxin, hemolysin A, in a
           Sec-independent fashion across both membranes of E.
           coli.  The hemolysin A (HlyA) transport machinery is
           composed of the ATP-binding cassette (ABC) transporter
           HlyB located in the inner membrane, hemolysin D (HlyD),
           also anchored in the inner membrane, and TolC, which
           resides in the outer membrane.  HlyD apparently forms a
           continuous channel that bridges the entire periplasm,
           interacting with TolC and HlyB.  This arrangement
           prevents the appearance of periplasmic intermediates of
           HlyA during substrate transport.  Little is known about
           the molecular details of HlyA transport, but it is
           evident that ATP-hydrolysis by the ABC-transporter HlyB
           is a necessary source of energy..
          Length = 237

 Score = 94.2 bits (234), Expect = 3e-20
 Identities = 70/230 (30%), Positives = 122/230 (53%), Gaps = 26/230 (11%)

Query: 24  NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83
           +  +IL+NI+L I  GE++G++G SG+GKS L + I       +G V V G  L LA   
Sbjct: 13  DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPA 72

Query: 84  QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH-TKIA-----IV 137
                  ++GV+ Q   LF+  ++++NI+      L  P   +E ++   K+A     I 
Sbjct: 73  ---WLRRQVGVVLQENVLFNR-SIRDNIA------LADPGMSMERVIEAAKLAGAHDFIS 122

Query: 138 GLPPETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194
            LP     ++  Q   LSGG  +R+++ARAL  +P +L  DE TS LD     E +  ++
Sbjct: 123 ELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD----YESEHAIM 178

Query: 195 KLRHSL--GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
           +  H +  G +V +I H L+  +   +R+ V++K  I+++G+  +++  N
Sbjct: 179 RNMHDICAGRTVIIIAHRLST-VKNADRIIVMEKGRIVEQGSHDELLAEN 227


>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 267

 Score = 93.9 bits (233), Expect = 4e-20
 Identities = 63/259 (24%), Positives = 129/259 (49%), Gaps = 21/259 (8%)

Query: 11  EKILSVRNLTIELNNRIIL---------NNINLDILRGEILGVIGSSGTGKSILMRGILG 61
           E +L VRNL+     R  L           ++  +  G+ L +IG +G+GKS L + + G
Sbjct: 2   ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAG 61

Query: 62  LIPRVSGEVKVLGEHLNLAKGKQNFAFSAK-LGVLFQ--HGALFSSMTVQENISMPIKEH 118
           +I   SGE+ +    L+      +++F +K + ++FQ  + +L   + + + +  P++ +
Sbjct: 62  MIEPTSGEILINDHPLHF----GDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN 117

Query: 119 LNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178
            +L  +     +   + +VGL P+ AN  P  L+ G  +RV+LARAL + P ++  DE  
Sbjct: 118 TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEAL 177

Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           + LD     +   L+++L+   G+S   +T  +  +    ++V V+ +  +++ G+ +D+
Sbjct: 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237

Query: 239 V-----DSNDPWIRSYFNR 252
           +     +     I S+F  
Sbjct: 238 LASPLHELTKRLIESHFGE 256


>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
           biosynthesis, ATPase and permease components [Energy
           production and conversion / Posttranslational
           modification, protein turnover, chaperones].
          Length = 559

 Score = 93.3 bits (232), Expect = 6e-20
 Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 25/216 (11%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL-NLAKGKQNFA 87
           L+++NL I  G++  ++G+SG GKS L+  +LG +    GE++V G  L +L+      A
Sbjct: 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPE----A 392

Query: 88  FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147
           +  ++  + Q+  LF+  T++ENI +      +   + I   +       GL        
Sbjct: 393 WRKQISWVSQNPYLFAG-TIRENILL---ARPDASDEEIIAALDQ----AGLLEFVPKPD 444

Query: 148 PFQ---------LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198
                       LSGG  +R++LARAL     LL LDEPT+ LD    +   + L     
Sbjct: 445 GLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQAL--QEL 502

Query: 199 SLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
           +   +V +ITH L +     +R+ V+    ++++GT
Sbjct: 503 AKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGT 537


>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
           system; part of the binding-protein-dependent transport
           system tbpA-thiPQ for thiamine and TPP.  Probably
           responsible for the translocation of thiamine across the
           membrane. ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 211

 Score = 92.3 bits (229), Expect = 1e-19
 Identities = 66/201 (32%), Positives = 99/201 (49%), Gaps = 7/201 (3%)

Query: 33  NLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKL 92
           +L   +GEI  ++G SG+GKS L+  I G     SG V + G  +  A           +
Sbjct: 18  DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADR-----PV 72

Query: 93  GVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLS 152
            +LFQ   LF+ +TV++N+ + +   L L A+  + I    +A VGL      L P +LS
Sbjct: 73  SMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAI-EVALARVGLAGLEKRL-PGELS 130

Query: 153 GGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLN 212
           GG  +RV+LAR L  D  +L LDEP + LDP    E   L++ L     ++V M+TH   
Sbjct: 131 GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190

Query: 213 NLISTCNRVAVIQKKGIMKEG 233
           +      RV  +    I  +G
Sbjct: 191 DAKRLAQRVVFLDNGRIAAQG 211


>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 263

 Score = 91.1 bits (226), Expect = 3e-19
 Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 18/234 (7%)

Query: 13  ILSVRNLTIELNN-----RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67
           ++S+ N T          +  LN ++L+I  G+ + VIGS+G GKS L+  I G +   S
Sbjct: 1   MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60

Query: 68  GEVKVLGEHLN-LAKGKQNFAFSAKLGVLFQHGA--LFSSMTVQENISMPI---KEHLNL 121
           G++ + G  +   +  K+    +  L  +FQ         +T++EN+++     K+    
Sbjct: 61  GQILIDGVDVTKKSVAKR----ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLS 116

Query: 122 PADLIEHIVHTKIAIVGLPPETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPT 178
            A         +  +  L     N +  +   LSGG  + +SL  A    P +L LDE T
Sbjct: 117 SALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176

Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232
           + LDP  AE   +L  K+     L+  M+TH++ + +   NR+ ++    I+ +
Sbjct: 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230


>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
           superfamily [Intracellular trafficking, secretion, and
           vesicular transport].
          Length = 591

 Score = 90.3 bits (224), Expect = 5e-19
 Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 26/240 (10%)

Query: 14  LSVRNLTIE-LNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           +   ++       R +L  ++  I +GE + ++GS+G+GKS ++R +L      SG + +
Sbjct: 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF-DYSGSILI 410

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI-----SMPIKEHLNLP----- 122
            G+ +   K     +    +GV+ Q   LF+  T+  NI     S   +E +        
Sbjct: 411 DGQDI---KEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGL 466

Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
            D+I  +      +VG   E        LSGG  +RVSLARA   D  +L LDE TS LD
Sbjct: 467 HDVISRLPDGYQTLVG---ERGL----MLSGGEKQRVSLARAFLKDAPILLLDEATSALD 519

Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
                E   +++ +    G +V MI H L +L+   +++ V+    + + GT S+++  +
Sbjct: 520 SETEREILDMIMDV--MSGRTVIMIVHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLAPS 576


>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 352

 Score = 89.6 bits (222), Expect = 7e-19
 Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 11/217 (5%)

Query: 32  INLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLA-KGKQNFAFSA 90
            N  +    I  + G SG+GK+ L+  I GL     G +++ G  L  A KG        
Sbjct: 17  ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76

Query: 91  KLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQ 150
           ++G +FQ   LF   TV+ N+   + + +    D +       +A++G+     +  P  
Sbjct: 77  RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQL-------VALLGIEH-LLDRYPGT 128

Query: 151 LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210
           LSGG  +RV++ RAL   P+LL +DEP + LD     E    L +LR  + + +  ++H 
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHS 188

Query: 211 LNNLISTCNRVAVIQKKGIMKEGTISDIVDSND--PW 245
           L+ ++   +RV V++   +   G + ++  S D  PW
Sbjct: 189 LDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPPW 225


>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
           system, ATPase component [Carbohydrate transport and
           metabolism / Cell envelope biogenesis, outer membrane].
          Length = 249

 Score = 89.5 bits (222), Expect = 8e-19
 Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 20/216 (9%)

Query: 27  IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNF 86
             L +I+ +I +GE +G+IG +G GKS L++ I G+    SG+VKV G+           
Sbjct: 41  WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK----------V 90

Query: 87  AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL 146
           A   +LG  F        +T +ENI +     L L    I+  V   I    L       
Sbjct: 91  APLIELGAGFDP-----ELTGRENIYL-RGLILGLTRKEIDEKVDEIIEFAEL--GDFID 142

Query: 147 MPFQ-LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205
            P +  S GM  R++ + A  ++PD+L LDE  +  D    E+  + L +L      ++ 
Sbjct: 143 QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIV 201

Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
           +++HDL  +   C+R   ++   I  EG+  +++ +
Sbjct: 202 LVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237


>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
           biogenesis, ATPase component [Posttranslational
           modification, protein turnover, chaperones].
          Length = 209

 Score = 89.2 bits (221), Expect = 9e-19
 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 10/197 (5%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L   NL+ E   R + ++++  +  GE L + G +G GK+ L+R + GL+   +GEV   
Sbjct: 3   LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           GE +   +      +   L  L     + + +T  EN+    + H +  A  I   +   
Sbjct: 63  GEPIQNVRES----YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQ- 117

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
              VGL     +L   QLS G  +RV+LAR       L  LDEP + LD         L+
Sbjct: 118 ---VGL-AGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALM 173

Query: 194 IKLRHSLGLSVYMITHD 210
                  G+ V + TH 
Sbjct: 174 AAHAAQGGI-VLLTTHQ 189


>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
           a bacterial ABC-type Na+ transport system called NatAB,
           which catalyzes ATP-dependent electrogenic Na+ extrusion
           without mechanically coupled proton or K+ uptake.  NatB
           possess six putative membrane spanning regions at its
           C-terminus.  In B. subtilus, NatAB is inducible by
           agents such as ethanol and protonophores, which lower
           the protonmotive force across the membrane.  The closest
           sequence similarity to NatA is exhibited by DrrA of the
           two-component daunomycin- and doxorubicin-efflux system.
            Hence, the functional NatAB is presumably assembled
           with two copies of a single ATP-binding protein and a
           single intergral membrane protein..
          Length = 218

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           ++ ++  +  GE+ G++G +G GK+  +R + GL+   +G   V G        K+    
Sbjct: 21  VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG----FDVVKEPAEA 76

Query: 89  SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMP 148
             +LG +     L+  +T +EN+      +  L  D +   +      +G+  E  +   
Sbjct: 77  RRRLGFVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTARLEELADRLGME-ELLDRRV 134

Query: 149 FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208
              S GM ++V++ARAL  DP +L LDEPT+GLD +A     + + +LR +LG  +   T
Sbjct: 135 GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR-ALGKCILFST 193

Query: 209 HDLNNLISTCNRVAVIQKKGIMKEG 233
           H +  +   C+RV V+ +  ++ EG
Sbjct: 194 HIMQEVERLCDRVVVLHRGRVVYEG 218


>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 325

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 9/235 (3%)

Query: 10  EEKILSVRNLTIELNNRII--LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67
           E  +    N       R I  + +I+ +I +GEI+G +G++G GKS  ++ + GL+   S
Sbjct: 19  EPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS 78

Query: 68  GEVKVLGEHLNLAKGKQNFAFSAKLG-VLFQHGALFSSMTVQENISMPIKEHLNLPADLI 126
           G+V+V G        ++   +   +G V+ Q   L+  +   +++ + +K    +P D  
Sbjct: 79  GKVRVNG----KDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEV-LKLIYEIPDDEF 133

Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186
              +     I+ L       +  +LS G   R  LA AL   P +LFLDEPT GLD  A 
Sbjct: 134 AERLDFLTEILDLEGFLKWPVR-KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192

Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
               + L +       +V + TH  +++ + C+RV +I +  ++ +GT++ + + 
Sbjct: 193 ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247


>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
           component/photorepair protein PhrA [Inorganic ion
           transport and metabolism].
          Length = 257

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 57/233 (24%), Positives = 108/233 (46%), Gaps = 10/233 (4%)

Query: 10  EEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69
            E ++ ++N+++  N + IL +++  +  GE   ++G +G GK+ L+  + G  P  SG+
Sbjct: 28  NEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGD 87

Query: 70  VKVLGEHLNLAKGKQNFAFSAKLGVL--FQHGALFSSMTVQENISMPIKEHLNLPA---- 123
           V +LG      KG+  F    ++G++    H       TV++ +       + +      
Sbjct: 88  VTLLGRR--FGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLT 145

Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183
                     + ++G     A+     LS G  +RV +ARAL  DP+LL LDEP  GLD 
Sbjct: 146 AEDLAAAQWLLELLGA-KHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDL 204

Query: 184 IAAEEFDKLLIKLRHSL-GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235
           IA E+    L +L  S    ++  +TH    +        ++++  ++ +G +
Sbjct: 205 IAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGKL 257


>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
           permease components [Defense mechanisms].
          Length = 567

 Score = 88.6 bits (219), Expect = 2e-18
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 10/235 (4%)

Query: 24  NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83
             + +L +I+  I  GE + ++G SG+GKS L++ +L L    SGE+ + G  +   +  
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDI---RDI 396

Query: 84  QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPP-- 141
              +   ++G++ Q   LFS  T++ENI++   +  +   +    + +    I  LP   
Sbjct: 397 SLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGY 455

Query: 142 -ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL 200
                     LSGG  +R+++ARAL  +P +L LDE TS LD          L KL    
Sbjct: 456 DTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK-- 513

Query: 201 GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYFNRFTK 255
           G +  +I H L+  I   +R+ V+    I++ GT  +++     + R Y  +   
Sbjct: 514 GRTTLIIAHRLST-IKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGGA 567


>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a large
           family of proteins responsible for translocation of a
           variety of compounds across biological membranes. ABC
           transporters are the largest family of proteins in many
           completely sequenced bacteria. ABC transporters are
           composed of two copies of this domain and two copies of
           a transmembrane domain pfam00664. These four domains may
           belong to a single polypeptide or belong in different
           polypeptide chains.
          Length = 119

 Score = 88.1 bits (219), Expect = 2e-18
 Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 8/127 (6%)

Query: 53  SILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENIS 112
           S L++ I GL+   SG + + GE       ++  A   ++GV+FQ   LF  +TV+EN+ 
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTDLSSRK--ALRKRIGVVFQDPQLFPELTVRENLF 58

Query: 113 MPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLL 172
             +++         +      +  VGLP          LSGG  +RV++ARAL   P LL
Sbjct: 59  FGLRDKE------ADARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKLL 112

Query: 173 FLDEPTS 179
            LDEPT+
Sbjct: 113 LLDEPTA 119


>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
           and permease components [General function prediction
           only].
          Length = 580

 Score = 87.2 bits (216), Expect = 4e-18
 Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 39/243 (16%)

Query: 11  EKILSVRNLTIELNN--RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68
           +  LSV  LT       + IL  I+  +  GE LG+IG SG+GKS L R ++G+ P  SG
Sbjct: 332 QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391

Query: 69  EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM--------PIKEHLN 120
            V++ G  L     +Q       +G L Q   LF   T+ ENI+          + E   
Sbjct: 392 SVRLDGADLRQWDREQ---LGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAAR 447

Query: 121 LPADLIEHIVH------TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFL 174
           L A + E I+       T+I   G            LSGG  +R++LARAL  DP L+ L
Sbjct: 448 L-AGVHELILRLPQGYDTRIGEGGAT----------LSGGQRQRIALARALYGDPFLVVL 496

Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
           DEP S LD          ++  + + G +V +I H   + +++ +++ V      +++G 
Sbjct: 497 DEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAHRP-SALASVDKILV------LQDGR 548

Query: 235 ISD 237
           I+ 
Sbjct: 549 IAA 551


>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
           proteins, ABC superfamily [Lipid transport and
           metabolism, General function prediction only].
          Length = 885

 Score = 87.4 bits (216), Expect = 4e-18
 Identities = 57/219 (26%), Positives = 101/219 (46%), Gaps = 6/219 (2%)

Query: 6   IPSQEEKILSVRNLTIELNNR-IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP 64
             S     L + NL+     +   +  ++  +  GE  G++G +G GK+   + + G   
Sbjct: 557 FRSSYSSALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK 616

Query: 65  RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPAD 124
             SGE  + G  + ++   Q      +LG   Q  AL+  +T +E++         LP  
Sbjct: 617 PTSGEALIKGHDITVSTDFQQV--RKQLGYCPQFDALWEELTGREHLEF-YARLRGLPRS 673

Query: 125 LIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184
            I   +   + +VGL P     +    SGG  +R+S A AL  DP ++ LDEP++GLDP 
Sbjct: 674 DIGSAIEKLLRLVGLGPYANKQVRT-YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPK 732

Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAV 223
           A      ++ +LR + G ++ + +H +    + C R A+
Sbjct: 733 ARRHLWDIIARLRKN-GKAIILTSHSMEEAEALCTRTAI 770


>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
           mitochondrial ATP-binding cassette protein involved in
           iron homeostasis and one of four ABC transporters
           expressed in the mitochondrial inner membrane, the other
           three being MDL1(ABC7), MDL2, and ATM1.  In fact, the
           yeast MDL1 (multidrug resistance-like protein 1) and
           MDL2 (multidrug resistance-like protein 2) transporters
           are also included in this CD.  MDL1 is an ATP-dependent
           permease that acts as a high-copy suppressor of ATM1 and
           is thought to have a role in resistance to oxidative
           stress. Interestingly, subfamily B is more closely
           related to the carboxyl-terminal component of subfamily
           C than the two halves of ABCC molecules are with one
           another..
          Length = 238

 Score = 86.7 bits (215), Expect = 5e-18
 Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 34/230 (14%)

Query: 25  NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR----VSGEVKVLGEH---L 77
           +  IL  ++L I  G+ + ++GSSG GKS     ++ L+ R     SGE+ + G     L
Sbjct: 15  DVPILKGLSLTIPPGKTVALVGSSGCGKST----VVSLLERFYDPTSGEILLDGVDIRDL 70

Query: 78  NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA-- 135
           NL          +++G++ Q   LF   T+ ENI           A   E     K A  
Sbjct: 71  NLRW------LRSQIGLVSQEPVLFD-GTIAENIRYGKP-----DATDEEVEEAAKKANI 118

Query: 136 ---IVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189
              I+ LP     L+     QLSGG  +R+++ARAL  +P +L LDE TS LD  + +  
Sbjct: 119 HDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178

Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239
            + L +     G +  +I H L+  I   + +AV+Q   ++++GT  +++
Sbjct: 179 QEALDRAM--KGRTTIVIAHRLST-IRNADLIAVLQNGQVVEQGTHDELM 225


>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 252

 Score = 86.4 bits (214), Expect = 6e-18
 Identities = 58/230 (25%), Positives = 116/230 (50%), Gaps = 5/230 (2%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           ++++ N++     +++L++++LDI +G I  +IG +G GKS L+  +  L+ + SGE+ +
Sbjct: 1   MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM-PIKEHLNLPADLIEHIVH 131
            G  L     K     + KL +L Q   + S +TV++ +                  I++
Sbjct: 61  DGLELTSTPSK---ELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIIN 117

Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
             I  + L   +   +  +LSGG  +R  +A  LA D D + LDEP + LD   + +  K
Sbjct: 118 EAIEYLHLEDLSDRYLD-ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176

Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
           +L +L   LG ++ ++ HD+N      + +  ++   ++K+G+  +I+  
Sbjct: 177 ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226


>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
           assembly, ATPase component [Posttranslational
           modification, protein turnover, chaperones].
          Length = 251

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 14/232 (6%)

Query: 11  EKILSVRNLTIELNNRI-ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR---V 66
             +L +++L +E+  +  IL  +NL +  GE+  ++G +G+GKS L   I+G  P+    
Sbjct: 1   MMMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVT 59

Query: 67  SGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLI 126
            GE+   GE +      +     A + + FQ+      +T  + +   +         L 
Sbjct: 60  EGEILFDGEDILELSPDERAR--AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILP 117

Query: 127 EHI--VHTKIAIVGLPPETANLMPFQ-LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183
           E I  +  K  ++GL  E       +  SGG  KR  + + L ++P L  LDEP SGLD 
Sbjct: 118 EFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI 177

Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITH--DLNNLISTCNRVAVIQKKGIMKEG 233
            A +   + +  LR   G  V +ITH   L + I   ++V V+    I+K G
Sbjct: 178 DALKIVAEGINALR-EEGRGVLIITHYQRLLDYI-KPDKVHVLYDGRIVKSG 227


>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
           expressed in the mitochondria.  Although the specific
           function of ATM1 is unknown, its disruption results in
           the accumulation of excess mitochondrial iron, loss of
           mitochondrial cytochromes, oxidative damage to
           mitochondrial DNA, and decreased levels of cytosolic
           heme proteins.  ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 236

 Score = 83.7 bits (207), Expect = 4e-17
 Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 26/229 (11%)

Query: 25  NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ 84
            R +L +++  I  G+ + ++G SG+GKS ++R +       SG + + G+ +   +   
Sbjct: 13  GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI---REVT 69

Query: 85  NFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETA 144
             +    +GV+ Q   LF+  T+  NI      +    A   E I   K A +    +  
Sbjct: 70  LDSLRRAIGVVPQDTVLFND-TIGYNI-----RYGRPDATDEEVIEAAKAAQIH---DKI 120

Query: 145 NLMPFQ-----------LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
              P             LSGG  +RV++ARA+  +P +L LDE TS LD     E    L
Sbjct: 121 MRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL 180

Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
             +  S G +  +I H L+  I   +++ V++   I++ GT  +++   
Sbjct: 181 RDV--SKGRTTIVIAHRLST-IVNADKIIVLKDGRIVERGTHEELLAKG 226


>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt   The KpsT/Wzt ABC transporter
           subfamily is involved in extracellular polysaccharide
           export.  Among the variety of membrane-linked or
           extracellular polysaccharides excreted by bacteria, only
           capsular polysaccharides, lipopolysaccharides, and
           teichoic acids have been shown to be exported by ABC
           transporters.  A typical system is made of a conserved
           integral membrane and an ABC.  In addition to these
           proteins, capsular polysaccharide exporter systems
           require two 'accessory' proteins to perform their
           function: a periplasmic (E.coli) or a lipid-anchored
           outer membrane protein called OMA (Neisseria
           meningitidis and Haemophilus influenzae) and a
           cytoplasmic membrane protein MPA2..
          Length = 224

 Score = 83.7 bits (207), Expect = 5e-17
 Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 24/227 (10%)

Query: 3   LNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL 62
                S   K L +     E+     L +++ ++ RGE +G+IG +G GKS L+R + G+
Sbjct: 12  TYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71

Query: 63  IPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLP 122
            P  SG V V G              S+ LG+    G     +T +ENI +     L L 
Sbjct: 72  YPPDSGTVTVRGR------------VSSLLGL---GGGFNPELTGRENIYL-NGRLLGLS 115

Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
              I+  +   I    L  +  +L     S GM  R++ A A A++PD+L +DE  +  D
Sbjct: 116 RKEIDEKIDEIIEFSEL-GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174

Query: 183 PIAAEEF-DKLLIKLRHSL--GLSVYMITHDLNNLISTCNRVAVIQK 226
                 F +K   +LR  L  G +V +++HD +++   C+R  V++K
Sbjct: 175 ----AAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEK 217


>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
           cytochrome bd biogenesis.  The CydC and CydD proteins
           are important for the formation of cytochrome bd
           terminal oxidase of E. coli and it has been proposed
           that they were necessary for biosynthesis of the
           cytochrome bd quinol oxidase and for periplasmic c-type
           cytochromes.  CydCD were proposed to determine a
           heterooligomeric complex important for heme export into
           the periplasm or to be involved in the maintenance of
           the proper redox state of the periplasmic space.  In
           Bacillus subtilius, the absence of CydCD does not affect
           the presence of halo-cytochrome c in the membrane and
           this observation suggests that CydCD proteins are not
           involved in the export of heme in this organism..
          Length = 178

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 46/222 (20%)

Query: 14  LSVRNLTIEL--NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
           LS+ N++       + +L N++L++ +GE + ++G SG+GKS L++ + G +    GE+ 
Sbjct: 1   LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131
           + G  ++  +     A S+ + VL Q   LF + T++ N+                    
Sbjct: 61  LDGVPVSDLEK----ALSSLISVLNQRPYLFDT-TLRNNLGR------------------ 97

Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
                             + SGG  +R++LAR L  D  ++ LDEPT GLDPI   +   
Sbjct: 98  ------------------RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139

Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
           L+ +       ++  ITH L   I   +++  ++   I+ +G
Sbjct: 140 LIFE--VLKDKTLIWITHHLTG-IEHMDKILFLENGKIIMQG 178


>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
           exporters. Many non-lantibiotic bacteriocins of lactic
           acid bacteria are produced as precursors which have
           N-terminal leader peptides that share similarities in
           amino acid sequence and contain a conserved processing
           site of two glycine residues in positions -1 and -2.  A
           dedicated ATP-binding cassette (ABC) transporter is
           responsible for the proteolytic cleavage of the leader
           peptides and subsequent translocation of the
           bacteriocins across the cytoplasmic membrane..
          Length = 220

 Score = 81.0 bits (200), Expect = 3e-16
 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 26/216 (12%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLAKGKQN 85
           L+N++L I  GE + +IG  G+GKS L++ + GL    SG V + G     L+ A  ++N
Sbjct: 20  LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79

Query: 86  FAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA----IVGLPP 141
                 +G + Q   LF   T+++NI++         AD    +   ++A     V   P
Sbjct: 80  ------IGYVPQDVTLFYG-TLRDNITLG-----APLADDERILRAAELAGVTDFVNKHP 127

Query: 142 ETANLM----PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197
              +L        LSGG  + V+LARAL  DP +L LDEPTS +D  + E   + L +L 
Sbjct: 128 NGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL 187

Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
                ++ +ITH   +L+   +R+ V+    I+ +G
Sbjct: 188 G--DKTLIIITHRP-SLLDLVDRIIVMDSGRIVADG 220


>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 716

 Score = 80.8 bits (199), Expect = 3e-16
 Identities = 61/220 (27%), Positives = 105/220 (47%), Gaps = 24/220 (10%)

Query: 25  NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLAK 81
           +  +L N++  I  GE++ ++G SG+GKS +   +L      SG + + G     +N   
Sbjct: 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKY 539

Query: 82  GKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA---IVG 138
            ++      +  VLF       S +++ENI+  +    N   + IE       A   I  
Sbjct: 540 LRRKIGLVGQEPVLF-------SGSIRENIAYGL---DNATDEEIEAAAKMANAHEFITN 589

Query: 139 LPPETANLM----PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194
            P +  N +      QLSGG  +R+++ARAL  +P +L LDE TS LD  +     + L 
Sbjct: 590 FP-DGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALD 648

Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
           +L    G +V +I H L + +   +++ VI K  +++ GT
Sbjct: 649 RLMQ--GRTVLVIAHRL-STVRHADQIVVIDKGRVVEMGT 685


>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
           related to eukaryotic MDR proteins.  ABC transporters
           are a large family of proteins involved in the transport
           of a wide variety of different compounds, like sugars,
           ions, peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 234

 Score = 80.6 bits (199), Expect = 4e-16
 Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 24/225 (10%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV----SGEVKVLGEHLNLAKGK 83
           +L +I+LDI  GE + ++G SG+GKS L+     LIPR     SG + + G  +      
Sbjct: 17  VLRDISLDIPAGETVALVGPSGSGKSTLVN----LIPRFYDVDSGRILIDGHDVRDYTLA 72

Query: 84  QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA---IVGLP 140
                  ++G++ Q   LF+  TV ENI+           + +E       A   I+ LP
Sbjct: 73  S---LRRQIGLVSQDVFLFND-TVAENIAY---GRPGATREEVEEAARAANAHEFIMELP 125

Query: 141 PETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197
                ++     +LSGG  +R+++ARAL  DP +L LDE TS LD  +       L +L 
Sbjct: 126 EGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL- 184

Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
                + ++I H L+  I   +R+ V++   I++ GT  +++   
Sbjct: 185 -MKNRTTFVIAHRLST-IENADRIVVLEDGKIVERGTHEELLAQG 227


>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C.  This
           family is also known as MRP (mulrtidrug
           resisitance-associated protein).  Some of the MRP
           members have five additional transmembrane segments in
           their N-terminas, but the function of these additional
           membrane-spanning domains is not clear.  The MRP was
           found in the multidrug-resisting lung cancer cell in
           which p-glycoprotein was not overexpressed. MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions, such as
           glutathione, glucuronate, and sulfate..
          Length = 204

 Score = 79.7 bits (197), Expect = 6e-16
 Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 47/231 (20%)

Query: 14  LSVRNLTI-----ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68
           +SV + +      E      L +INL++ +GE++ ++G  G+GKS L+  +LG + ++SG
Sbjct: 1   ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60

Query: 69  EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI--SMPIKE--------- 117
            V V G          + A+ ++   +        + T++ENI    P  E         
Sbjct: 61  SVSVPG----------SIAYVSQEPWIQ-------NGTIRENILFGKPFDEERYEKVIKA 103

Query: 118 -HLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176
             L    +++     T+I   G+           LSGG  +R+SLARA+  D D+  LD+
Sbjct: 104 CALEPDLEILPDGDLTEIGEKGI----------NLSGGQKQRISLARAVYSDADIYLLDD 153

Query: 177 PTSGLDP-IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226
           P S +D  +    F+  ++ L      +  ++TH L  L+   +++ V+  
Sbjct: 154 PLSAVDAHVGRHIFENCILGLL-LNNKTRILVTHQL-QLLPHADQIVVLDN 202


>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 330

 Score = 79.7 bits (196), Expect = 8e-16
 Identities = 57/239 (23%), Positives = 117/239 (48%), Gaps = 36/239 (15%)

Query: 13  ILSVRNLTIEL---NNRI-ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP---R 65
           +L +RNLTIE       +  ++ +++ +  GEI G++G SG+GKS++ + I G+     R
Sbjct: 3   LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWR 62

Query: 66  VSGEVKVLG--EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPA 123
           V+ +       + L L+  ++       + ++FQ     S +   E +   + +  N+PA
Sbjct: 63  VTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ--SCLDPSERVGRQLIQ--NIPA 118

Query: 124 DLIE---------------HIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARAL 165
              +                ++H ++ I     +  ++M   P++L+ G  ++V +A AL
Sbjct: 119 WTYKGRWWQRFGWRKRRAIELLH-RVGI----KDHKDIMRSYPYELTEGECQKVMIAIAL 173

Query: 166 AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224
           A  P LL  DEPT+ ++P    +  +LL +L  +   ++ +I+HDL  +    +++ V+
Sbjct: 174 ANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVL 232


>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
           protein/mitoxantrone resistance protein, ABC superfamily
           [Secondary metabolites biosynthesis, transport and
           catabolism].
          Length = 1381

 Score = 79.5 bits (196), Expect = 9e-16
 Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 39/228 (17%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L +IN +I +G+++ V+G  G+GKS L+  ILG +P++SG V V G          + A+
Sbjct: 537 LKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG----------SVAY 586

Query: 89  SAKLGVLFQHGALFSSMTVQENISM--PIKEHL--------NLPADLIEHIVHTKIAIVG 138
                   Q   +  + TV+ENI    P  E           L  DL E +    +  +G
Sbjct: 587 VP------QQPWIQ-NGTVRENILFGSPYDEERYDKVIKACALKKDL-EILPFGDLTEIG 638

Query: 139 LPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP-IAAEEFDKLLIKLR 197
              E        LSGG  +R+SLARA+  D D+  LD+P S +D  +    F++ +  L 
Sbjct: 639 ---ERG----INLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL 691

Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPW 245
              G +V ++TH L  L    +++ V++   I++ GT  +++ S   +
Sbjct: 692 R--GKTVILVTHQLQFL-PHADQIIVLKDGKIVESGTYEELLKSGGDF 736



 Score = 66.1 bits (161), Expect = 9e-12
 Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 31/246 (12%)

Query: 24   NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLA 80
            N  ++L  I+  I  GE +G++G +G GKS L+  +  L+    GE+ + G     + L 
Sbjct: 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLH 1210

Query: 81   KGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLP 140
              +       +L ++ Q   LFS  TV+ N+  P  E+ +            K  +  LP
Sbjct: 1211 DLRS------RLSIIPQDPVLFSG-TVRFNLD-PFDEYSDDEIWEALERCQLKDVVSSLP 1262

Query: 141  --------PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
                        N      S G  + + LARAL     +L LDE T+ +DP    E D L
Sbjct: 1263 GGLDSEVSEGGEN-----FSVGQRQLLCLARALLRKSKILVLDEATASVDP----ETDAL 1313

Query: 193  LIK-LRHSL-GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYF 250
            + K +R      +V  I H LN ++   +RV V+    +++  + ++++   D    S  
Sbjct: 1314 IQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLL 1372

Query: 251  NRFTKR 256
                  
Sbjct: 1373 KEAALS 1378


>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
           superfamily [Inorganic ion transport and metabolism].
          Length = 790

 Score = 76.6 bits (188), Expect = 6e-15
 Identities = 54/239 (22%), Positives = 105/239 (43%), Gaps = 21/239 (8%)

Query: 14  LSVRNLTIELN-NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           +   N+T   +  + +L++I+  +  G+ + ++G SG GKS +MR +       SG + +
Sbjct: 538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITI 597

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
            G+ +         +  + +GV+ Q   LF+  T+  NI      +    A   E     
Sbjct: 598 DGQDIRNV---TQSSLRSSIGVVPQDTVLFND-TILYNI-----RYAKPSASNEEVYAAA 648

Query: 133 KIA-----IVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184
           K A     I+  P      +     +LSGG  +RV++AR +   P ++ LDE TS LD  
Sbjct: 649 KAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTN 708

Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243
                   L +L      +  ++ H L+ +++  + + VI    I++ G   +++  + 
Sbjct: 709 TERAIQAALARL--CANRTTIVVAHRLSTIVNA-DLILVISNGRIVERGRHEELLKRDG 764


>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
           protein.  In A. tumefaciens cyclic beta-1, 2-glucan must
           be transported into the periplasmic space to exert its
           action as a virluence factor.  This subfamily belongs to
           the MRP-like family and is involved in drug, peptide,
           and lipid export.  The MRP-like family, similar to all
           ABC proteins, have a common four-domain core structure
           constituted by two membrane-spanning domains each
           composed of six transmembrane (TM) helices and two
           nucleotide-binding domains (NBD).  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 229

 Score = 76.0 bits (187), Expect = 8e-15
 Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 25/241 (10%)

Query: 14  LSVRNLTIELNN-RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           +   N+    +  + +L +IN  I  GE + ++G +G GK+ L+  ++       G++ +
Sbjct: 3   IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM----PIKEHLNLPA----- 123
            G  +     K      + +GV+ Q   LFS  T+ ENI +       E +   A     
Sbjct: 63  DGIDIRDISRKS---LRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGA 118

Query: 124 -DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
            D I  + +    ++G   E        LS G  + +++ARA+  DP +L LDE TS +D
Sbjct: 119 HDFIMKLPNGYDTVLG---ENGGN----LSQGERQLLAIARAMLRDPKILILDEATSNID 171

Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
               +   + L KL    G +  +I H L+  I   +++ V+    I++EGT  +++   
Sbjct: 172 TETEKLIQEALEKLMK--GRTSIIIAHRLST-IKNADKILVLDDGKIIEEGTHDELLAKK 228

Query: 243 D 243
            
Sbjct: 229 G 229


>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
           Fe-S cluster assembly, ATPase component.  Biosynthesis
           of iron-sulfur clusters (Fe-S) depends on multiprotein
           systems.  The SUF system of E. coli and Erwinia
           chrysanthemi is important for Fe-S biogenesis under
           stressful conditions.  The SUF system is made of six
           proteins: SufC is an atypical cytoplasmic ABC-ATPase,
           which forms a complex with SufB and SufD; SufA plays the
           role of a scaffold protein for assembly of iron-sulfur
           clusters and delivery to target proteins; SufS is a
           cysteine desulfurase which mobilizes the sulfur atom
           from cysteine and provides it to the cluster; SufE has
           no associated function yet..
          Length = 200

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 43/225 (19%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR---VSGEV 70
           L +++L + +  + IL  +NL I +GE+  ++G +G+GKS L + I+G  P+     GE+
Sbjct: 1   LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYEVTEGEI 59

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130
              GE  ++            + + FQ+      +   + +      ++N          
Sbjct: 60  LFKGE--DITDLPPEERARLGIFLAFQYPPEIPGVKNADFL-----RYVN---------- 102

Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190
                  G             SGG  KR  + + L ++PDL  LDEP SGLD  A     
Sbjct: 103 ------EGF------------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVA 144

Query: 191 KLLIKLRHSLGLSVYMITH--DLNNLISTCNRVAVIQKKGIMKEG 233
           +++ KLR   G SV +ITH   L + I   +RV V+    I+K G
Sbjct: 145 EVINKLR-EEGKSVLIITHYQRLLDYIKP-DRVHVLYDGRIVKSG 187


>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
           component [Coenzyme metabolism].
          Length = 248

 Score = 73.5 bits (180), Expect = 6e-14
 Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 23/220 (10%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L  ++ ++  GEIL ++G +G GKS L+  + G+    SG ++  G+ L      +    
Sbjct: 15  LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATE---- 69

Query: 89  SAKLGVLFQHGALFSSMTVQENISMPIKEHLNL--PADLIEHIVHTKIAIVGLPPETANL 146
                 L +H A  S        +MP+  +L L  P      +++     + L  +    
Sbjct: 70  ------LARHRAYLSQQQ-TPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGR- 121

Query: 147 MPFQLSGGMIKRVSLARA-LAIDPD------LLFLDEPTSGLDPIAAEEFDKLLIKLRHS 199
              QLSGG  +RV LA   L I PD      LL LDEP + LD       D+LL  L   
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ 181

Query: 200 LGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239
            GL++ M +HDLN+ +   +R  ++++  ++  G   +++
Sbjct: 182 -GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220


>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
           permease components [Secondary metabolites biosynthesis,
           transport, and catabolism / Inorganic ion transport and
           metabolism].
          Length = 546

 Score = 72.7 bits (178), Expect = 9e-14
 Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 13/205 (6%)

Query: 7   PSQEEKILSVRNLTIE-LNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR 65
              + K L +RN+     +N   +  INL I RGE++ +IG +G+GKS L   + GL   
Sbjct: 316 AFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP 375

Query: 66  VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125
            SGE+ + G        +Q   +      +F    LF  +   E  + P      L    
Sbjct: 376 QSGEILLDG---KPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLE 432

Query: 126 IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
           + H                     +LS G  KR++L  AL  + D+L LDE  +  DP  
Sbjct: 433 LAHKTSLN---------DGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAF 483

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHD 210
             EF ++L+ L    G +++ I+HD
Sbjct: 484 RREFYQVLLPLLKEQGKTIFAISHD 508


>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
           with duplicated ATPase domains/Translation elongation
           factor EF-3b [Amino acid transport and metabolism,
           Translation, ribosomal structure and biogenesis].
          Length = 582

 Score = 72.3 bits (177), Expect = 1e-13
 Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 23/209 (11%)

Query: 10  EEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69
           + K + + N  +    +I+LN  NL + RG   G++G +G GKS L+R I       +G+
Sbjct: 77  KSKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAI------ANGQ 130

Query: 70  VKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHI 129
           V        +          A   VL           + E   +     L       E I
Sbjct: 131 VSGFHVEQEVRGDD----TEALQSVL--ESDTERLDFLAEEKELLAGLTL-------EEI 177

Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189
               +A +G  PE        LSGG   R++LARAL   PDLL LDEPT+ LD +A    
Sbjct: 178 YDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWL 237

Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTC 218
           +  L     +  ++  +++HD N L + C
Sbjct: 238 ENYL----QTWKITSLIVSHDRNFLNTVC 262



 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 51/215 (23%), Positives = 78/215 (36%), Gaps = 24/215 (11%)

Query: 24  NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83
           +       + LD      +  +G +G GKS L+              K+L   L   +G 
Sbjct: 375 SEYQWRKQLGLDRESDSRISRVGENGDGKSTLL--------------KILKGDLTPTRGI 420

Query: 84  QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143
                  ++    QH   F    V   +    K       + I       +   GL  E 
Sbjct: 421 VGRHPRLRIKYFAQHHVDFLDKNVNA-VDFMEKSFPGKTEEEIRR----HLGSFGLSGEL 475

Query: 144 ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLS 203
           A      LSGG   RV+ A     +P LL LDEPT+ LD    +    L   L++  G  
Sbjct: 476 ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLD---RDSLGALAKALKNFNG-G 531

Query: 204 VYMITHDLNNLISTCNRVAVIQKKGIMK-EGTISD 237
           V +++HD   + S C  + V++   +   EG I  
Sbjct: 532 VVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDK 566


>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
           Processing; TAP is essential for peptide delivery from
           the cytosol into the lumen of the endoplasmic reticulum
           (ER), where these peptides are loaded on major
           histocompatibility complex (MHC) I molecules.  Loaded
           MHC I leave the ER and display their antigenic cargo on
           the cell surface to cytotoxic T cells.  Subsequently,
           virus-infected or malignantly transformed cells can be
           eliminated.  TAP belongs to the large family of
           ATP-binding cassette (ABC) transporters, which
           translocate a vast variety of solutes across membranes..
          Length = 226

 Score = 71.5 bits (175), Expect = 2e-13
 Identities = 54/226 (23%), Positives = 110/226 (48%), Gaps = 13/226 (5%)

Query: 7   PSQEEKILSVRNLTIELNNR---IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI 63
           P   + I+  +N+T     R   ++L +++  +  GE+  ++G SG+GKS ++  +    
Sbjct: 5   PDHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64

Query: 64  PRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENIS--MPIKEHLNL 121
               G+V + G+ ++  + K      +K+ ++ Q   LF+  ++Q+NI+  +       +
Sbjct: 65  QPQGGQVLLDGKPISQYEHKY---LHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECV 120

Query: 122 PADLIEHIVHTKIAIVGLPPET-ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180
                +   H+ I+ +    +T       QLSGG  +RV++ARAL  +P +L LDE TS 
Sbjct: 121 KEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSA 180

Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226
           LD  + ++  + L         +V +I H L + +   +++ V+  
Sbjct: 181 LDAESEQQVQQALYDWPER--RTVLVIAHRL-STVERADQILVLDG 223


>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C.  This
           family is also known as MRP (mulrtidrug
           resisitance-associated protein).  Some of the MRP
           members have five additional transmembrane segments in
           their N-terminus, but the function of these additional
           membrane-spanning domains is not clear.  The MRP was
           found in the multidrug-resistance lung cancer cell in
           which p-glycoprotein was not overexpressed.  MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions, such as
           glutathione, glucuronate, and sulfate..
          Length = 221

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 17/213 (7%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLAKGKQ 84
           +L NI+  I  GE +G++G +G+GKS L+  +  L+   SG + + G     + L   + 
Sbjct: 19  VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78

Query: 85  NFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPP--- 141
                 ++ ++ Q   LFS  T++ N+  P  E+ +         V  K  +  LP    
Sbjct: 79  ------RISIIPQDPVLFSG-TIRSNLD-PFGEYSDEELWQALERVGLKEFVESLPGGLD 130

Query: 142 ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLG 201
                    LS G  + + LARAL     +L LDE T+ +DP       K + +      
Sbjct: 131 TVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--D 188

Query: 202 LSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
            +V  I H L+ +I   +R+ V+ K  +++  +
Sbjct: 189 CTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220


>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
           [General function prediction only].
          Length = 614

 Score = 70.4 bits (172), Expect = 5e-13
 Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 29/251 (11%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           + + +L++  +   ++ ++ L++ RG   G+IG +G+GKS  +R I G    +       
Sbjct: 76  VKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIP------ 129

Query: 74  GEHLNLAKGKQNFAFS----AKLGVLF-----QHGALFSSMTVQE------NISMPIKEH 118
            EH++     +    S     +  V+      +     +    Q       +    + E 
Sbjct: 130 -EHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYER 188

Query: 119 LN-LPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEP 177
           L+ +  D  E      +  +G   E  +     LSGG   R +LARAL   PDLL LDEP
Sbjct: 189 LDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEP 248

Query: 178 TSGLDPIAAEEFDKLLIKL-RHSLGLSVYMITHDLNNLISTC-NRVAVIQKKGIMKEGTI 235
           T+ LD  A    ++ L K  R  L +    ++H  + L   C N + +  KK I  EG  
Sbjct: 249 TNHLDLEAIVWLEEYLAKYDRIILVI----VSHSQDFLNGVCTNIIHLDNKKLIYYEGNY 304

Query: 236 SDIVDSNDPWI 246
              V +     
Sbjct: 305 DQYVKTRSELE 315



 Score = 68.1 bits (166), Expect = 2e-12
 Identities = 53/210 (25%), Positives = 78/210 (37%), Gaps = 28/210 (13%)

Query: 25  NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ 84
           N +I   +N  I     + ++G +G GKS L++ I G +    G V     H  L +  Q
Sbjct: 402 NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMV-SRHSHNKLPRYNQ 460

Query: 85  NFAFSAKL--GVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPE 142
           + A    L    L      F      E +   +     L  D                  
Sbjct: 461 HLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRF-GLTGD------------------ 501

Query: 143 TANLMPF-QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLG 201
            A ++P  QLS G  +RV  AR     P LL LDEPT+ LD    E  D L   +    G
Sbjct: 502 -AQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLD---IETIDALAEAINEFPG 557

Query: 202 LSVYMITHDLNNLISTCNRVAVIQKKGIMK 231
             V +++HD   +      + V +   + K
Sbjct: 558 -GVVLVSHDFRLISQVAEEIWVCENGTVTK 586


>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
           the bacterial CcmAB transporter.  The CCM family is
           involved in bacterial cytochrome c biogenesis.
           Cytochrome c maturation in E. coli requires the ccm
           operon, which encodes eight membrane proteins
           (CcmABCDEFGH).  CcmE is a periplasmic heme chaperone
           that binds heme covalently and transfers it onto
           apocytochrome c in the presence of CcmF, CcmG, and CcmH.
            The CcmAB proteins represent an ABC transporter and the
           CcmCD proteins participate in heme transfer to CcmE..
          Length = 201

 Score = 69.6 bits (170), Expect = 7e-13
 Identities = 58/199 (29%), Positives = 89/199 (44%), Gaps = 12/199 (6%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L    LT E + R + + ++  +  GE L V G +G+GK+ L+R + GL P ++G V + 
Sbjct: 1   LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLN 60

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           G  L      Q  + +  L  L     + ++++V EN+           AD  +  V   
Sbjct: 61  GGPL----DFQRDSIARGLLYLGHAPGIKTTLSVLENLRF-------WHADHSDEQVEEA 109

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
           +A VGL     +    QLS G  +RV+LAR L     L  LDEPT+ LD      F + +
Sbjct: 110 LARVGL-NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168

Query: 194 IKLRHSLGLSVYMITHDLN 212
                  G+ V     DL 
Sbjct: 169 AGHCARGGMVVLTTHQDLG 187


>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
           superfamily) [Translation, ribosomal structure and
           biogenesis].
          Length = 807

 Score = 69.0 bits (168), Expect = 1e-12
 Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 15/219 (6%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           + + N  I    +++  N +L I+ G   G++G +G GK+ L++ I      +   + VL
Sbjct: 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVL 324

Query: 74  -GEHLNLAKGKQNF-----AFSAKLGVLFQHGALFSSM-----TVQENISMPIKEHLNLP 122
             E   +A           A   +L +L +   L S +     T  E +     E   + 
Sbjct: 325 LCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG 384

Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
           AD  E      +A +G   E       + SGG   RVSLARAL ++P LL LDEPT+ LD
Sbjct: 385 ADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLD 444

Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRV 221
             A    D  L   + +L     +++HD   L S C  +
Sbjct: 445 LNAVIWLDNYLQGWKKTL----LIVSHDQGFLDSVCTDI 479



 Score = 57.0 bits (137), Expect = 5e-09
 Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 25/218 (11%)

Query: 13  ILSVRNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
           +L + ++T      + +   ++  I     + ++G +G GKS L++ ++G +    GE++
Sbjct: 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELR 645

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131
              ++  L           ++G   QH     ++  +E     ++   NLP         
Sbjct: 646 ---KNHRL-----------RIGWFDQHAN--EALNGEETPVEYLQRKFNLP----YQEAR 685

Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
            ++   GL      +    LSGG   RV+LA      PD+L LDEPT+ LD    E  D 
Sbjct: 686 KQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD---IESIDA 742

Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGI 229
           L   +    G  V M++HD   ++ T   + V++ +GI
Sbjct: 743 LAEAINEYNG-GVIMVSHDERLIVETDCNLWVVENQGI 779


>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
           assembly, permease and ATPase components
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 497

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 16/216 (7%)

Query: 25  NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ 84
            R ILN I+  I  G+ + ++G SG GKS ++R +       SG + + G+ +      Q
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDV--TQ 332

Query: 85  NFAFSAKLGVLFQHGALFSSMTVQENISM--PIKEHLNLPADLIEHIVHTKIAIVGLPPE 142
                A +G++ Q   LF+  T+  NI    P      + A      +H  I  +   PE
Sbjct: 333 QSLRRA-IGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL---PE 387

Query: 143 TANLM----PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198
             +        +LSGG  +RV++AR +  +P +L LDE TS LD    +     L ++  
Sbjct: 388 GYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREV-- 445

Query: 199 SLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
           S G +  +I H L+ +I   + + V+    I++ GT
Sbjct: 446 SAGRTTLVIAHRLSTIIDA-DEIIVLDNGRIVERGT 480


>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
           (PDR1-15), ABC superfamily [Secondary metabolites
           biosynthesis, transport and catabolism].
          Length = 1391

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 32/227 (14%)

Query: 3   LNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL 62
           L NI S   + +       +     IL +I+  I  GE+  V+G  G+GK+ L++ + G 
Sbjct: 105 LVNILSNPLESILRMLGKRKKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGK 164

Query: 63  IP---RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI-------- 111
           +    + SGE+   G  L     K+  A++++  V F        +TV+E +        
Sbjct: 165 LDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE------LTVRETLDFAARCKG 218

Query: 112 ------SMPIKEHLNLPADLIEHIV---HTKIAIVGLPPETANLMPFQLSGGMIKRVSLA 162
                  +  +E L    D +  I+   H    +VG      N M   +SGG  KRVS+ 
Sbjct: 219 PGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVG------NDMVRGVSGGERKRVSIG 272

Query: 163 RALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209
             L     +LF DE T GLD   A +  K L +L H  G +  +   
Sbjct: 273 EMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSIL 319



 Score = 63.7 bits (155), Expect = 5e-11
 Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 20/172 (11%)

Query: 26  RIILNNINLDILRGEILGVIGSSGTGKSILM-----RGILGLIPRVSGEVKVLGEHLNLA 80
           R +LNN++     G +  ++G SG GK+ L+     R   G I    G++ + G      
Sbjct: 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYI---EGDILISG------ 854

Query: 81  KGKQNFAFSAKLGVLFQHGALFSSMTVQEN--ISMPIKEHLNLPADLIEHIVHTKIAIVG 138
             K    F+   G + Q       +TV+E+   S  ++    +  +     V   I ++ 
Sbjct: 855 FPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLE 914

Query: 139 LPPETANLM--PFQ-LSGGMIKRVSLARALAIDPD-LLFLDEPTSGLDPIAA 186
           L      L+  P   LS    KR+++   L  +P  +LFLDEPTSGLD  AA
Sbjct: 915 LKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAA 966


>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
           permease and ATPase components [General function
           prediction only].
          Length = 604

 Score = 66.8 bits (163), Expect = 5e-12
 Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 26/207 (12%)

Query: 8   SQEEKILSVRNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV 66
              +  +++ NL++   + + +L+ +N ++  GE L + G SG GK+ L+R + GL P  
Sbjct: 387 DNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG 446

Query: 67  SGEVKVLGEHLNLAKGKQNFAFSAKLGVLF--QHGALFSSMTVQENISMPIKEHLNLPAD 124
           SG + +  +                  +LF  Q        T++E +  P        A+
Sbjct: 447 SGRISMPADS----------------ALLFLPQRP-YLPQGTLREALCYPNAAPDFSDAE 489

Query: 125 LIEHIVHTKIAIVGLPPETANLMPFQ--LSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
           L+   V  K+ +  L         +   LSGG  +R++ AR L   P  +FLDE TS LD
Sbjct: 490 LVA--VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547

Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITH 209
               +   +LL         +V  + H
Sbjct: 548 EETEDRLYQLLK--EELPDATVISVGH 572


>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 235

 Score = 64.2 bits (156), Expect = 3e-11
 Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV--LGEHLNLAKGKQN 85
           +L N++L +  GE + + G SG+GKS L+R +        G++ V   GE ++L   +  
Sbjct: 26  VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85

Query: 86  FAFSAK---LGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPE 142
                +   +G + Q   +   ++  + ++ P+     +P ++        +  + LP  
Sbjct: 86  EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA-RGVPREVARAKAADLLTRLNLPER 144

Query: 143 TANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
             +L P   SGG  +RV++AR   +D  +L LDEPT+ LD
Sbjct: 145 LWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184


>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
           (PDR) family of ATP-binding cassette (ABC) transporters.
           PDR is a well-described phenomenon occurring in fungi
           and shares several similarities with processes in
           bacteria and higher eukaryotes.  This PDR subfamily
           represents domain I of its (ABC-IM)2 organization.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds
           including sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 192

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 57/206 (27%), Positives = 87/206 (42%), Gaps = 51/206 (24%)

Query: 13  ILSVRNLTIELN----NRIILNNINLDILRGEILGVIGSSGTGKSILM-----RGILGLI 63
           +L+ +NL   +      R +LNNI+  +  G +  ++G SG GK+ L+     R   G+I
Sbjct: 3   VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI 62

Query: 64  PRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPA 123
              +GE+ + G         +NF  S   G + Q      ++TV+E +            
Sbjct: 63  ---TGEILINGR-----PLDKNFQRST--GYVEQQDVHSPNLTVREALRF---------- 102

Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183
                              +A L    LS    KR+++   LA  P +LFLDEPTSGLD 
Sbjct: 103 -------------------SALLR--GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS 141

Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITH 209
            AA    + L KL  S G ++    H
Sbjct: 142 QAAYNIVRFLKKLADS-GQAILCTIH 166


>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
           transporter (Pat) is involved in the import of very
           long-chain fatty acids (VLCFA) into the peroxisome.  The
           peroxisomal membrane forms a permeability barrier for a
           wide variety of metabolites required for and formed
           during fatty acid beta-oxidation.  To communicate with
           the cytoplasm and mitochondria, peroxisomes need
           dedicated proteins to transport such hydrophilic
           molecules across their membranes.  X-linked
           adrenoleukodystrophy (X-ALD) is caused by mutations in
           the ALD gene, which encodes ALDP (adrenoleukodystrophy
           protein ), a peroxisomal integral membrane protein that
           is a member of the ATP-binding cassette (ABC)
           transporter protein family.  The disease is
           characterized by a striking and unpredictable variation
           in phenotypic expression.  Phenotypes include the
           rapidly progressive childhood cerebral form (CCALD), the
           milder adult form, adrenomyeloneuropathy (AMN), and
           variants without neurologic involvement (i.e.
           asymptomatic)..
          Length = 166

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 56/199 (28%)

Query: 14  LSVRNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           + + NL++   + R++L +++ +I  G+ L + G SGTGKS L R + GL P  SG + +
Sbjct: 1   IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLF--QHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130
                                +LF  Q        T++E +  P  +             
Sbjct: 61  PEGE----------------DLLFLPQR-PYLPLGTLREQLIYPWDD------------- 90

Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190
                               LSGG  +R++ AR L   P  +FLDE TS LD    EE +
Sbjct: 91  -------------------VLSGGEQQRLAFARLLLHKPKFVFLDEATSALD----EESE 127

Query: 191 KLLIKLRHSLGLSVYMITH 209
             L +L   LG++V  + H
Sbjct: 128 DRLYQLLKELGITVISVGH 146


>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1.  The cystic
           fibrosis transmembrane regulator (CFTR), the product of
           the gene mutated in patients with cystic fibrosis, has
           adapted the ABC transporter structural motif to form a
           tightly regulated anion channel at the apical surface of
           many epithelia.  Use of the term assembly of a
           functional ion channel implies the coming together of
           subunits, or at least smaller not-yet functional
           components of the active whole.  In fact, on the basis
           of current knowledge only the CFTR polypeptide itself is
           required to form an ATP- and protein kinase A-dependent
           low-conductance chloride channel of the type present in
           the apical membrane of many epithelial cells.  CFTR
           displays the typical organization (IM-ABC)2 and carries
           a characteristic hydrophilic R-domain that separates
           IM1-ABC1 from IM2-ABC2..
          Length = 282

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 24/197 (12%)

Query: 4   NNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI 63
           +   S ++  L   NL +      +L NINL I +GE+L + GS+G+GK+ L+  ILG +
Sbjct: 30  DRKHSSDDNNLFFSNLCLVGAP--VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87

Query: 64  PRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPA 123
               G++K  G            +FS++        +     T++ENI   +        
Sbjct: 88  EPSEGKIKHSGR----------ISFSSQF-------SWIMPGTIKENIIFGVSYDEYRYK 130

Query: 124 DLIEHIVHTKIAIVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180
            +++     +  I   P +   ++      LSGG   R+SLARA+  D DL  LD P   
Sbjct: 131 SVVK-ACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189

Query: 181 LDPIAAEE-FDKLLIKL 196
           LD    +E F+  + KL
Sbjct: 190 LDVFTEKEIFESCVCKL 206


>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1.  The sulfonylurea receptor
           SUR is an ATP transporter of the ABCC/MRP family with
           tandem ATPase binding domains.  Unlike other ABC
           proteins, it has no intrinsic transport function,
           neither active nor passive, but associates with the
           potassium channel proteins Kir6.1 or Kir6.2 to form the
           ATP-sensitive potassium (K(ATP)) channel.  Within the
           channel complex, SUR serves as a regulatory subunit that
           fine-tunes the gating of Kir6.x in response to
           alterations in cellular metabolism.  It constitutes a
           major pharmaceutical target as it binds numerous drugs,
           K(ATP) channel openers and blockers, capable of up- or
           down-regulating channel activity..
          Length = 218

 Score = 61.3 bits (148), Expect = 3e-10
 Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 37/207 (17%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV-------KVLGEHLNLAK 81
           L+NIN+ I  G++  ++G  G GKS L+  ILG +  + G+V                ++
Sbjct: 17  LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76

Query: 82  GKQNFAFSAKLGVLFQHGALFSSMTVQENISM--PIKEH----------LNLPADLIEHI 129
            + + A++A+   L        + TV+ENI+   P  +           L    DL+   
Sbjct: 77  NRYSVAYAAQKPWLL-------NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFG 129

Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD-PIAAEE 188
             T+I   G+           LSGG  +R+ +ARAL  + +++FLD+P S LD  ++   
Sbjct: 130 DQTEIGERGI----------NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHL 179

Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLI 215
             + ++K       ++ ++TH L  L 
Sbjct: 180 MQEGILKFLQDDKRTLVLVTHKLQYLP 206


>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
           acetyltransferase domain [General function prediction
           only].
          Length = 593

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 25/211 (11%)

Query: 5   NIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP 64
            +P++ + IL    +   +  R +L N+NL+I  G+++ V+G SG GK+ L+R ILG   
Sbjct: 375 GLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG--- 431

Query: 65  RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLF--QHGALFSSMTVQENISMPIKEHLNLP 122
                 K  GE        +       +  L   ++   F  +T+ E++        +  
Sbjct: 432 ----AQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLR-------SKT 480

Query: 123 ADLIEHIVHTKIAIV---GLPPETANLMPF-QLSGGMIKRVSLARALAIDPDLLFLDEPT 178
            D     ++  + I+   GL         F +LS G  +R  LA+ LA  P++L +DE  
Sbjct: 481 GD-----LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFA 535

Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209
           + LD + A    + + +L    G+++ ++TH
Sbjct: 536 AHLDELTAVRVARKISELAREAGITLIVVTH 566


>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2.  The cystic
           fibrosis transmembrane regulator (CFTR), the product of
           the gene mutated in patients with cystic fibrosis, has
           adapted the ABC transporter structural motif to form a
           tightly regulated anion channel at the apical surface of
           many epithelia.  Use of the term assembly of a
           functional ion channel implies the coming together of
           subunits or at least smaller not-yet functional
           components of the active whole.  In fact, on the basis
           of current knowledge only the CFTR polypeptide itself is
           required to form an ATP- and protein kinase A-dependent
           low-conductance chloride channel of the type present in
           the apical membrane of many epithelial cells.  CFTR
           displays the typical organization (IM-ABC)2 and carries
           a characteristic hydrophilic R-domain that separates
           IM1-ABC1 from IM2-ABC2..
          Length = 275

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 59/236 (25%), Positives = 114/236 (48%), Gaps = 22/236 (9%)

Query: 14  LSVRNLTIELNN--RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
           ++V++LT +       +L NI+  I  G+ +G++G +G+GKS L+   L L+    G+++
Sbjct: 3   MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGDIQ 61

Query: 72  VLGEHLN---LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128
           + G   N   L K ++ F      GV+ Q   +FS  T ++N+  P  +  +     +  
Sbjct: 62  IDGVSWNSVPLQKWRKAF------GVIPQKVFIFSG-TFRKNLD-PYGKWSDEEIWKVAE 113

Query: 129 IVHTKIAIVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
            V  K  I   P +   ++      LS G  + + LAR++     +L LDEP++ LDPI 
Sbjct: 114 EVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT 173

Query: 186 AEEFDKLLIKLRHSL-GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
            +   K    L+ +    +V +  H +  ++  C R  VI++  + +  +I  +++
Sbjct: 174 YQVIRKT---LKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN 225


>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
           superfamily (involved in peroxisome organization and
           biogenesis) [Lipid transport and metabolism, General
           function prediction only].
          Length = 659

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 30/198 (15%)

Query: 24  NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83
           N  +++ N++L++  G+ L + G SG GK+ L+R + GL P   G++    +        
Sbjct: 446 NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD-------- 497

Query: 84  QNFAFSAKLGVLF-QHGALFSSMTVQENISMPIKEHLNLPA----DLIEHIVHTKIAIVG 138
                  K  + F       +  T+++ +  P+K           + I  I+   + +  
Sbjct: 498 ----GGPK-DLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILE-NVQLGH 551

Query: 139 LPPETANLMPFQ-------LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
           L      L           LS G  +R++ AR     P    LDE TS +     E+ + 
Sbjct: 552 LLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVT----EDVEG 607

Query: 192 LLIKLRHSLGLSVYMITH 209
            L +    +G++   + H
Sbjct: 608 ALYRKCREMGITFISVGH 625


>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
           family of ATP-binding cassette (ABC) transporters.  PDR
           is a well-described phenomenon occurring in fungi and
           shares several similarities with processes in bacteria
           and higher eukaryotes.  This PDR subfamily represents
           domain I of its (ABC-IM)2 organization.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds
           including sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide-binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 202

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 47/213 (22%)

Query: 1   MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL 60
           +   NI     K           +   IL + +  +  GE++ V+G  G+G S L++ + 
Sbjct: 4   LSWRNISFTTGK---------GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALA 54

Query: 61  GLIP---RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMP--- 114
                   V G++   G        K            +    ++ S   +E++  P   
Sbjct: 55  NRTEGNVSVEGDIHYNGIPYKEFAEK------------YPGEIIYVS---EEDVHFPTLT 99

Query: 115 IKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFL 174
           ++E L+                        N     +SGG  KRVS+A AL     +L  
Sbjct: 100 VRETLDFALRC-----------------KGNEFVRGISGGERKRVSIAEALVSRASVLCW 142

Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207
           D  T GLD   A E  K +  +   L  + ++ 
Sbjct: 143 DNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175


>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3  Elongation factor 3 (EF-3) is a
           cytosolic protein required by fungal ribosomes for in
           vitro protein synthesis and for in vivo growth.  EF-3
           stimulates the binding of the EF-1: GTP: aa-tRNA ternary
           complex to the ribosomal A site by facilitated release
           of the deacylated tRNA from the E site.  The reaction
           requires ATP hydrolysis.  EF-3 contains two ATP
           nucleotide binding sequence (NBS) motifs.  NBSI is
           sufficient for the intrinsic ATPase activity. NBSII is
           essential for the ribosome-stimulated functions..
          Length = 144

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209
           QLSGG   R++LA+ L  +P+LL LDEPT+ LD  + E  ++ L +       +V +++H
Sbjct: 70  QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPG----TVILVSH 125

Query: 210 DLNNLISTCNRVAVIQKKG 228
           D   L     ++  ++   
Sbjct: 126 DRYFLDQVATKIIELEDGK 144



 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 18/59 (30%), Positives = 34/59 (57%)

Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
          + + NL+     +++L +I+L I  G+ +G++G +G GKS L++ I G +    G V  
Sbjct: 1  IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59


>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
          Length = 252

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 70/240 (29%), Positives = 116/240 (48%), Gaps = 23/240 (9%)

Query: 12  KILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR---VSG 68
            IL ++NL   +N   IL  +NL I +GEI  ++G +G+GKS L + I G  P    + G
Sbjct: 6   PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH-PAYKILEG 64

Query: 69  EVKVLGEHLNLAKGKQNFAFSAKLGVL--FQHGALFSSMTVQENISMPIK---EHLNLP- 122
           ++   GE +   + ++     A LG+   FQ+      ++  + + +      +   LP 
Sbjct: 65  DILFKGESILDLEPEER----AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPE 120

Query: 123 ADLIE--HIVHTKIAIVGLPPE--TANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178
            D +E   I++ K+ +VG+ P   + N+     SGG  KR  + +   +D +L  LDE  
Sbjct: 121 LDPLEFLEIINEKLKLVGMDPSFLSRNVNE-GFSGGEKKRNEILQMALLDSELAILDETD 179

Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITH--DLNNLISTCNRVAVIQKKGIMKEGTIS 236
           SGLD  A +   + + KL  S   S+ +ITH   L + I   + V V+Q   I+K G   
Sbjct: 180 SGLDIDALKIIAEGINKLMTS-ENSIILITHYQRLLDYIKP-DYVHVMQNGKIIKTGDAE 237


>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
           [General function prediction only].
          Length = 591

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 23/148 (15%)

Query: 35  DILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGV 94
           +I  GE++G++G +G GK+  ++ + G+I    G  + L           ++  + +  +
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLL 422

Query: 95  LFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGG 154
                + F S   +  I  P    LNL  DL+E  V                    LSGG
Sbjct: 423 RSAIRSAFGSSYFKTEIVKP----LNLE-DLLERPVDE------------------LSGG 459

Query: 155 MIKRVSLARALAIDPDLLFLDEPTSGLD 182
            ++RV++A AL+ + DL  LDEP++ LD
Sbjct: 460 ELQRVAIAAALSREADLYLLDEPSAYLD 487



 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 48/200 (24%)

Query: 12  KILSVRNLTIELNNRII----LNNINLDIL----RGEILGVIGSSGTGKSILMRGILGLI 63
             +S+ NL  EL   ++    +N   L  L     G+++G++G +G GKS  ++ IL   
Sbjct: 65  DAISIVNLPEELEEEVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALK-IL--- 120

Query: 64  PRVSGEVKV-LGEH---------LNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQ--ENI 111
              +GE+K  LG +         +   +G +   +  KL      G L +    Q  + I
Sbjct: 121 ---AGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL----YEGELRAVHKPQYVDLI 173

Query: 112 SMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPF---------QLSGGMIKRVSLA 162
              +K  +    +L++     K+   G   E    +           +LSGG ++RV++A
Sbjct: 174 PKVVKGKVG---ELLK-----KVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIA 225

Query: 163 RALAIDPDLLFLDEPTSGLD 182
            AL  D D+ F DEP+S LD
Sbjct: 226 AALLRDADVYFFDEPSSYLD 245


>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
           L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI),
           is a key enzyme in ribosomal biogenesis, formation of
           translation preinitiation complexes, and assembly of HIV
           capsids.  RLI's are not transport proteins and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLI's have an N-terminal
           Fe-S domain and two nucleotide-binding domains which are
           arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity of more than 48%.  The high degree of
           evolutionary conservation suggests that RLI performs a
           central role in archaeal and eukaryotic physiology..
          Length = 246

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 27/151 (17%)

Query: 35  DILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGV 94
            I   E++G++G +G GK+  ++ + G++    G++++  + ++                
Sbjct: 21  SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKP------------- 67

Query: 95  LFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQ---L 151
             Q+       TV++ +S   K+    P    E         +  P +   ++  +   L
Sbjct: 68  --QYIKADYEGTVRDLLSSITKDFYTHPYFKTE---------IAKPLQIEQILDREVPEL 116

Query: 152 SGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
           SGG ++RV++A  L+ D D+  LDEP++ LD
Sbjct: 117 SGGELQRVAIAACLSKDADIYLLDEPSAYLD 147


>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
           transporter 1).  NFT1 belongs to the MRP (mulrtidrug
           resisitance-associated protein) family of ABC
           transporters.  Some of the MRP members have five
           additional transmembrane segments in their N-terminas,
           but the function of these additional membrane-spanning
           domains is not clear.  The MRP was found in the
           multidrug-resisting lung cancer cell in which
           p-glycoprotein was not overexpressed.  MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions such as
           glutathione, glucuronate, and sulfate..
          Length = 207

 Score = 46.4 bits (110), Expect = 8e-06
 Identities = 47/201 (23%), Positives = 92/201 (45%), Gaps = 27/201 (13%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87
           +L N++  +  GE +G++G +G GKS L+  +   +    G++++ G  ++    +    
Sbjct: 23  VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLE---D 79

Query: 88  FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147
             + L ++ Q   LFS  T++ N+  P  E+ +   ++   +   +++  GL        
Sbjct: 80  LRSSLTIIPQDPTLFSG-TIRSNLD-PFDEYSD--EEIYGAL---RVSEGGL-------- 124

Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL--GLSVY 205
              LS G  + + LARAL   P +L LDE T+ +D       D L+ K         ++ 
Sbjct: 125 --NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT----DALIQKTIREEFTNSTIL 178

Query: 206 MITHDLNNLISTCNRVAVIQK 226
            I H L  +I   +++ V+  
Sbjct: 179 TIAHRLRTIID-YDKILVMDA 198


>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
           Nucleotide excision repair in eubacteria is a process
           that repairs DNA damage by the removal of a 12-13-mer
           oligonucleotide containing the lesion.  Recognition and
           cleavage of the damaged DNA is a multistep ATP-dependent
           reaction that requires the UvrA, UvrB, and UvrC
           proteins.  Both UvrA and UvrB are ATPases, with UvrA
           having two ATP binding sites, which have the
           characteristic signature of the family of ABC proteins
           and UvrB having one ATP binding site that is
           structurally related to that of helicases..
          Length = 261

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 52/252 (20%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L NI++DI  G +  V G SG+GKS L+   L   P ++  + +  E        +    
Sbjct: 11  LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLY--PALARRLHLKKEQPGNHDRIEGLEH 68

Query: 89  SAKLGVLFQ-----------------------------HGALFSSMTVQ-----ENIS-- 112
             K+ V+ Q                              G  ++  T++     ++I+  
Sbjct: 69  IDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADV 128

Query: 113 --MPIKEHLNLPADL--IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARAL--- 165
             M ++E L    ++  I   + T +  VGL           LSGG  +R+ LA+ L   
Sbjct: 129 LDMTVEEALEFFENIPKIARKLQT-LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKR 187

Query: 166 AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH--SLGLSVYMITHDLNNLISTCNRVAV 223
           +    L  LDEPT+GL      +  KLL  L+     G +V +I H+L ++I   + +  
Sbjct: 188 STGKTLYILDEPTTGLHF---HDVKKLLEVLQRLVDKGNTVVVIEHNL-DVIKCADWIID 243

Query: 224 IQKKGIMKEGTI 235
           +  +G    G +
Sbjct: 244 LGPEGGDGGGQV 255


>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
           recombination, and repair].
          Length = 935

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 15/116 (12%)

Query: 151 LSGGMIKRVSLARAL---AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207
           LSGG  +RV LA+ L   +    L  LDEPT+GL     ++  ++L +L    G +V +I
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVI 881

Query: 208 THDLNNLISTCNRVAVIQKKG------IMKEGTISDIVDSNDPWIRSYFNRFTKRI 257
            H+L ++I T + +  +  +G      I+  GT  ++         SY  ++ K+ 
Sbjct: 882 EHNL-DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKV----KASYTGKYLKKY 932



 Score = 38.2 bits (89), Expect = 0.002
 Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 25/161 (15%)

Query: 106 TVQENISMPIKEHLNLPADLIEHIVHTKIAI---------------VGLPPETANLMPFQ 150
            + E   M I + L    +L       KIA                VGL   T +     
Sbjct: 422 NIAEISEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGT 481

Query: 151 LSGGMIKRVSLARAL--AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208
           LSGG  +R+ LA  +   +   L  LDEP+ GL     E   + L +LR  LG +V ++ 
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVVE 540

Query: 209 HDLNNLISTCNRVAVIQKKG------IMKEGTISDIVDSND 243
           HD  + I   + +  I          I+ EGT  +++ + +
Sbjct: 541 HDE-DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPE 580



 Score = 33.6 bits (77), Expect = 0.055
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 19  LTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLN 78
           L ++   R  L NI+++I  G    V G SG+GKS L+   L         V  L  HLN
Sbjct: 607 LELKGARRNNLKNIDVEIPLGVFTCVTGVSGSGKSTLINDTL---------VPALARHLN 657

Query: 79  LAK 81
             K
Sbjct: 658 GTK 660



 Score = 31.7 bits (72), Expect = 0.22
 Identities = 13/27 (48%), Positives = 20/27 (74%)

Query: 29 LNNINLDILRGEILGVIGSSGTGKSIL 55
          L NI+L+I R +++ + G SG+GKS L
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42


>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
           (RLI) is a key enzyme in ribosomal biogenesis, formation
           of translation preinitiation complexes, and assembly of
           HIV capsids.  RLI's are not transport proteins, and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLI's have an N-terminal
           Fe-S domain and two nucleotide-binding domains, which
           are arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity more than 48%.  The high degree of evolutionary
           conservation suggests that RLI performs a central role
           in archaeal and eukaryotic physiology..
          Length = 177

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 21/76 (27%), Positives = 37/76 (48%)

Query: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209
            LSGG ++RV++A AL  +      DEP++ LD        + + +L      +  ++ H
Sbjct: 71  DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130

Query: 210 DLNNLISTCNRVAVIQ 225
           DL  L    +R+ V +
Sbjct: 131 DLAVLDYLSDRIHVFE 146



 Score = 30.3 bits (68), Expect = 0.49
 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 35 DILRGEILGVIGSSGTGKSILMRGILG-LIP 64
           +  GE++G++G +GTGK+  ++ + G LIP
Sbjct: 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIP 51


>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
           L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI),
           is a key enzyme in ribosomal biogenesis, formation of
           translation preinitiation complexes, and assembly of HIV
           capsids.  RLI s are not transport proteins and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLIs have an N-terminal
           Fe-S domain and two nucleotide binding domains which are
           arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity more than 48%.  The high degree of evolutionary
           conservation suggests that RLI performs a central role
           in archaeal and eukaryotic physiology..
          Length = 255

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209
           QLSGG ++RV++A ALA D D  F DEP+S LD I        LI+        V ++ H
Sbjct: 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLD-IKQRLNAARLIRELAEDDNYVLVVEH 197

Query: 210 DL 211
           DL
Sbjct: 198 DL 199



 Score = 26.4 bits (58), Expect = 8.0
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 39 GEILGVIGSSGTGKSILMRGILG-LIP 64
          G++LG++G +G GKS  ++ + G L P
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKP 52


>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
           recombination, and repair].
          Length = 908

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 13/71 (18%)

Query: 150 QLSGGMIKRVSLARALAI--------DPDLLFLDEPTSGLDPIAAEEFDKLLIKLR--HS 199
            LSGG     SLA  LA+          +LLFLDEP   LD    E  +KL   L    S
Sbjct: 815 TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDE---ERLEKLAEILEELLS 871

Query: 200 LGLSVYMITHD 210
            G  + +I+H 
Sbjct: 872 DGRQIIIISHV 882


>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
           processing and modification].
          Length = 592

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 24/187 (12%)

Query: 40  EILGVIGSSGTGKSILMRGILGLI-PRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH 98
           EI+ ++G +GTGK+  +R + G + P   GE+      LN++   Q    S K     + 
Sbjct: 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIP----VLNVSYKPQ--KISPKREGTVRQ 421

Query: 99  GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKR 158
             L  +      +       +  P   IE+I+  ++                LSGG ++R
Sbjct: 422 --LLHTKIRDAYMHPQFVNDVMKPL-QIENIIDQEVQ--------------GLSGGELQR 464

Query: 159 VSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTC 218
           V+LA  L    D+  +DEP++ LD        K++ +       + +++ HD        
Sbjct: 465 VALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLA 524

Query: 219 NRVAVIQ 225
           +RV V +
Sbjct: 525 DRVIVFE 531



 Score = 32.2 bits (73), Expect = 0.13
 Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 43/222 (19%)

Query: 17  RNLTIELNNRIILNNINLDILR----GEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
            NL  E  +R   N+  L  L     G++LG++G++G GKS  ++ IL      +G+ K 
Sbjct: 74  TNLEKETTHRYSANSFKLHRLPIPRPGQVLGLVGTNGIGKSTALK-IL------AGKQKP 126

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMT--VQENISMPIKEHLNLPADLIEHIV 130
                NL +      +   L   F+   L +  T  +++N+   IK       D I   V
Sbjct: 127 -----NLGRYDNPPDWQEILT-YFRGSELQNYFTKILEDNLKAIIKPQY---VDQIPRAV 177

Query: 131 HTKIA-IVGLPPETANLMPF---------------QLSGGMIKRVSLARALAIDPDLLFL 174
              +  ++    E  N                   QLSGG ++R ++A       D+   
Sbjct: 178 KGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMF 237

Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT--HDLNNL 214
           DEP+S LD    ++  K  I +R  +    Y+I   HDL+ L
Sbjct: 238 DEPSSYLD---VKQRLKAAITIRSLINPDRYIIVVEHDLSVL 276


>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
           the ATP-binding cassette of ABC transporters, but are
           not associated with membrane-spanning domains.  The
           conserved ATP-binding motifs common to Rad50 and the ABC
           transporter family include the Walker A and Walker B
           motifs, the Q loop, a histidine residue in the switch
           region, a D-loop, and a conserved LSGG sequence.  This
           conserved sequence, LSGG, is the most specific and
           characteristic motif of this family and is thus known as
           the ABC signature sequence..
          Length = 204

 Score = 39.4 bits (92), Expect = 9e-04
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 146 LMPFQLSGG------MIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE-FDKLLIKLRH 198
            M  + SGG      +I R++LA     +  +L LDEPT+ LD    EE   +++ + + 
Sbjct: 111 DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS 170

Query: 199 SLGLSVYMITHD 210
                + +ITHD
Sbjct: 171 QKNFQLIVITHD 182


>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
           excision repair in eubacteria is a process that repairs
           DNA damage by the removal of a 12-13-mer oligonucleotide
           containing the lesion.  Recognition and cleavage of the
           damaged DNA is a multistep ATP-dependent reaction that
           requires the UvrA, UvrB, and UvrC proteins.  Both UvrA
           and UvrB are ATPases, with UvrA having two ATP binding
           sites, which have the characteristic signature of the
           family of ABC proteins, and UvrB having one ATP binding
           site that is structurally related to that of helicases..
          Length = 176

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 151 LSGGMIKRVSLARALA--IDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208
           LSGG ++RV LA  L       L  LDEP++GL      +  +++  L   LG +V +I 
Sbjct: 88  LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI-DLGNTVILIE 146

Query: 209 HDL 211
           H+L
Sbjct: 147 HNL 149


>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
           Nucleotide excision repair in eubacteria is a process
           that repairs DNA damage by the removal of a 12-13-mer
           oligonucleotide containing the lesion.  Recognition and
           cleavage of the damaged DNA is a multistep ATP-dependent
           reaction that requires the UvrA, UvrB, and UvrC
           proteins.  Both UvrA and UvrB are ATPases, with UvrA
           having two ATP binding sites, which have the
           characteristic signature of the family of ABC proteins,
           and UvrB having one ATP binding site that is
           structurally related to that of helicases..
          Length = 226

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 52/216 (24%), Positives = 82/216 (37%), Gaps = 62/216 (28%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSIL--------------------------------M 56
           L N+++DI R +++ + G SG+GKS L                                +
Sbjct: 11  LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDV 70

Query: 57  RGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIK 116
             I GL P ++ + K    +     G     +   L +LF                + I+
Sbjct: 71  DSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYD-YLRLLFAR--------------VGIR 115

Query: 117 EHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPD--LLFL 174
           E L     L++         VGL   T +     LSGG  +R+ LA  +       L  L
Sbjct: 116 ERLGF---LVD---------VGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL 163

Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210
           DEP+ GL P   +   + L +LR  LG +V ++ HD
Sbjct: 164 DEPSIGLHPRDNDRLIETLKRLR-DLGNTVLVVEHD 198


>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
           transporter, ABC superfamily [Lipid transport and
           metabolism].
          Length = 728

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 45/194 (23%), Positives = 72/194 (37%), Gaps = 27/194 (13%)

Query: 24  NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83
              +++  +   I  G  L + G +G GKS L R + GL P       V    L++ +  
Sbjct: 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-------VYNGLLSIPRPN 545

Query: 84  QNFAFSAKLGVLFQHGALFSSMTVQENISMP-----IKEHLNLPADLIE--HIVHTK-IA 135
             F    +           S  T+++ I  P     +K       DL     IVH + I 
Sbjct: 546 NIFYIPQR--------PYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHIL 597

Query: 136 IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIK 195
                 +        LSGG  +R+ +AR     P    LDE TS +      + +  + +
Sbjct: 598 QREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSI----DVEGKIFQ 653

Query: 196 LRHSLGLSVYMITH 209
                G+S+  ITH
Sbjct: 654 AAKDAGISLLSITH 667


>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
           cellular processes other than transport.  These families
           are characterised by the fact that the ABC subunit is
           made up of duplicated, fused ABC modules (ABC2).  No
           known transmembrane proteins or domains are associated
           with these proteins..
          Length = 162

 Score = 35.7 bits (82), Expect = 0.012
 Identities = 31/137 (22%), Positives = 40/137 (29%), Gaps = 33/137 (24%)

Query: 82  GKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPP 141
           GK     +  L +     A      V+                           IV    
Sbjct: 33  GKSTILDAIGLALGGAQSATRRRSGVKAGC------------------------IVAAVS 68

Query: 142 ETANLMPFQLSGGMIKRVSLARALAI----DPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197
                   QLSGG  +  +LA  LA+       L  LDE   GLDP    +   L   + 
Sbjct: 69  AELIFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDP---RDGQALAEAIL 125

Query: 198 HSL--GLSVYMITHDLN 212
             L  G  V +ITH   
Sbjct: 126 EHLVKGAQVIVITHLPE 142


>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
           implicated in the metabolism of DNA ends. They cleave
           ends sealed by hairpin structures and are thought to
           play a role in removing protein bound to DNA termini..
          Length = 213

 Score = 34.4 bits (79), Expect = 0.033
 Identities = 43/186 (23%), Positives = 64/186 (34%), Gaps = 37/186 (19%)

Query: 40  EILGVIGSSGTGKSILMRGI-LGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH 98
            +  + G +G GKS ++  I   L  +     +        A G+     +A++   FQ 
Sbjct: 29  GLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGED----TAEVSFTFQL 84

Query: 99  GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPP-ETANLMPFQ---LSGG 154
           G               ++    L  D           IV LP  E    +      LSGG
Sbjct: 85  G----------GKKYRVERSRGLDYD-------QFTRIVLLPQGEFDRFLARPVSTLSGG 127

Query: 155 MIKRVSLARALA----------IDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSV 204
                SL+ ALA             + LF+DE    LDP A E     L  +R +    V
Sbjct: 128 ETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIR-TENRMV 186

Query: 205 YMITHD 210
            +I+H 
Sbjct: 187 GVISHV 192


>gnl|CDD|30199 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
           the Benson-Calvin cycle in chloroplasts or
           photosynthetic prokaryotes. This enzyme catalyzes the
           phosphorylation of D-ribulose 5-phosphate to form
           D-ribulose 1, 5-biphosphate, using ATP and NADPH
           produced by the primary reactions of photosynthesis..
          Length = 273

 Score = 34.5 bits (79), Expect = 0.034
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 15/111 (13%)

Query: 41  ILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL---GEHLNLAKGKQNFAFSA------K 91
           I+GV G SG GKS  +R +  L    S  V V+     H    KG++    +A       
Sbjct: 1   IIGVAGDSGCGKSTFLRRLTSLF--GSDLVTVICLDDYHSLDRKGRKETGITALDPRANN 58

Query: 92  LGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIV-GLPP 141
             ++++      ++   + I  PI  H+    D  E I  TKI ++ GL P
Sbjct: 59  FDLMYEQ---LKALKEGQAIEKPIYNHVTGLIDPPELIKPTKIVVIEGLHP 106


>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
           component/CCR4 associated factor [General function
           prediction only, Transcription].
          Length = 291

 Score = 33.4 bits (76), Expect = 0.064
 Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 42/248 (16%)

Query: 16  VRNLTIELNNRI--------ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67
           V +  IE++           I  + NLD+  G    ++G++G GK+ L++ + G      
Sbjct: 9   VSDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG 68

Query: 68  GEVKVLGE---HLNLAKGKQNFAFSAKLGVLFQHGALFS-SMTVQENISMPIKEHLNLPA 123
           G V+VLG    H    +   + ++   LG  +      +  + +Q +IS           
Sbjct: 69  GVVQVLGRSAFHDTSLESSGDLSY---LGGEWSKTVGIAGEVPLQGDIS----------- 114

Query: 124 DLIEHIVHTKIAIVGLPPETANLM-----------PFQLSGGMIKRVSLARALAIDPDLL 172
              EH++     + G  PE    +             ++S G  +RV +   L     +L
Sbjct: 115 --AEHMI---FGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVL 169

Query: 173 FLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232
            LDE T  LD +A  +  + L +     G ++   TH  + L +    +  I+   ++  
Sbjct: 170 LLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDN 229

Query: 233 GTISDIVD 240
                I +
Sbjct: 230 LKYQKIKE 237


>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2.  The sulfonylurea receptor
           SUR is an ATP binding cassette (ABC) protein of the
           ABCC/MRP family.  Unlike other ABC proteins, it has no
           intrinsic transport function, neither active nor
           passive, but associates with the potassium channel
           proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
           potassium (K(ATP)) channel.  Within the channel complex,
           SUR serves as a regulatory subunit that fine-tunes the
           gating of Kir6.x in response to alterations in cellular
           metabolism.  It constitutes a major pharmaceutical
           target as it binds numerous drugs, K(ATP) channel
           openers and blockers, capable of up- or down-regulating
           channel activity..
          Length = 257

 Score = 33.1 bits (75), Expect = 0.079
 Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 10/174 (5%)

Query: 14  LSVRNLTIELNNRI--ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
           + + +L +   N +  +L ++   I  G+ +G+ G +G+GKS L      ++    G++ 
Sbjct: 20  IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV 79

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131
           + G  ++++K   +    ++L ++ Q   LFS  +++ N+    K   +   + +E I  
Sbjct: 80  IDG--IDISKLPLH-TLRSRLSIILQDPILFSG-SIRFNLDPECKCTDDRLWEALE-IAQ 134

Query: 132 TKIAIVGLPPETANLMPF---QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
            K  +  LP     ++       S G  +   LARA      +L +DE T+ +D
Sbjct: 135 LKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASID 188


>gnl|CDD|33262 COG3459, COG3459, Cellobiose phosphorylase [Carbohydrate transport
           and metabolism].
          Length = 1056

 Score = 32.2 bits (73), Expect = 0.13
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 66  VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGAL 101
            +G+  +L E +    G     FS +   L++H A 
Sbjct: 684 ETGDAAILDEVIPFIDGPALPEFSKEQATLYEHCAR 719


>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
           only].
          Length = 301

 Score = 31.8 bits (72), Expect = 0.19
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 5/49 (10%)

Query: 35  DILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83
           ++L G+I  ++G SG GKS L+  +L  + + +GE+        L +G+
Sbjct: 160 ELLAGKITVLLGQSGVGKSTLINALLPELNQKTGEISE-----KLGRGR 203


>gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type
            ATPase/SMC superfamily [Replication, recombination and
            repair].
          Length = 1294

 Score = 30.3 bits (68), Expect = 0.49
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 155  MIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKL----RHSLGLSVYMITHD 210
            +I R++LA     +  +L LDEPT+ LD    E   K L ++    R      + +ITHD
Sbjct: 1194 LIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHD 1253


>gnl|CDD|48201 cd03326, MR_like_1, Mandelate racemase (MR)-like subfamily of the
           enolase superfamily, subgroup 1. Enzymes of this
           subgroup share three conserved carboxylate ligands for
           the essential divalent metal ion (usually Mg2+), two
           aspartates and a glutamate, and conserved catalytic
           residues,  a Lys-X-Lys motif and a conserved
           histidine-aspartate dyad. This subgroup's function is
           unknown..
          Length = 385

 Score = 30.2 bits (68), Expect = 0.64
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 153 GGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186
           GG+++   + R LA  PD L LD+    LDP  A
Sbjct: 58  GGLLRERFIPRLLAAAPDSL-LDDAGGNLDPARA 90


>gnl|CDD|35965 KOG0746, KOG0746, KOG0746, 60S ribosomal protein L3 and related
           proteins [Translation, ribosomal structure and
           biogenesis].
          Length = 384

 Score = 30.0 bits (67), Expect = 0.73
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMI-KRVSLAR 163
             +I  I HT++ ++ L  + A+LM  Q++GG + ++V  AR
Sbjct: 144 CQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKVDWAR 185


>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC.  YjeQ (YloQ in Bacillus subtilis)
           represents a protein family whose members are broadly
           conserved in bacteria and have been shown to be
           essential to the growth of E. coli and B. subtilis.
           Proteins of the YjeQ family contain all sequence motifs
           typical of the vast class of P-loop-containing GTPases,
           but show a circular permutation, with a G4-G1-G3 pattern
           of motifs as opposed to the regular G1-G3-G4 pattern
           seen in most GTPases. All YjeQ family proteins display a
           unique domain architecture, which includes an N-terminal
           OB-fold RNA-binding domain, the central permuted GTPase
           domain, and a zinc knuckle-like C-terminal cysteine
           domain. This domain architecture suggests a role for
           YjeQ as a regulator of translation..
          Length = 287

 Score = 29.8 bits (67), Expect = 0.84
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 35  DILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           + L+G+   ++G SG GKS L+  +L  +   +GE+
Sbjct: 157 EYLKGKTSVLVGQSGVGKSTLINALLPDLDLATGEI 192


>gnl|CDD|133313 cd04113, Rab4, Rab4 subfamily.  Rab4 has been implicated in
          numerous functions within the cell.  It helps regulate
          endocytosis through the sorting, recycling, and
          degradation of early endosomes. Mammalian Rab4 is
          involved in the regulation of many surface proteins
          including G-protein-coupled receptors, transferrin
          receptor, integrins, and surfactant protein A.
          Experimental data implicate Rab4 in regulation of the
          recycling of internalized receptors back to the plasma
          membrane.  It is also believed to influence
          receptor-mediated antigen processing in B-lymphocytes,
          in calcium-dependent exocytosis in platelets, in
          alpha-amylase secretion in pancreatic cells, and in
          insulin-induced translocation of Glut4 from internal
          vesicles to the cell surface. Rab4 is known to share
          effector proteins with Rab5 and Rab11.  GTPase
          activating proteins (GAPs) interact with GTP-bound Rab
          and accelerate the hydrolysis of GTP to GDP. Guanine
          nucleotide exchange factors (GEFs) interact with
          GDP-bound Rabs to promote the formation of the
          GTP-bound state.  Rabs are further regulated by guanine
          nucleotide dissociation inhibitors (GDIs), which
          facilitate Rab recycling by masking C-terminal lipid
          binding and promoting cytosolic localization.  Most Rab
          GTPases contain a lipid modification site at the
          C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
          binding is essential for membrane attachment, a key
          feature of most Rab proteins.  Due to the presence of
          truncated sequences in this CD, the lipid modification
          site is not available for annotation.
          Length = 161

 Score = 29.1 bits (66), Expect = 1.3
 Identities = 10/14 (71%), Positives = 12/14 (85%)

Query: 44 VIGSSGTGKSILMR 57
          +IGSSGTGKS L+ 
Sbjct: 5  IIGSSGTGKSCLLH 18


>gnl|CDD|30843 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
          recombination, and repair].
          Length = 557

 Score = 29.0 bits (65), Expect = 1.4
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 19 LTIELNNRIILNNINLDILRGEILGVI-GSSGTGKSILMRGILGLI 63
          L + + N  I+  + L+  +G  L V+ G +G GKSI++  +  L+
Sbjct: 3  LELSIKNFAIIEELELEFEKG--LTVLTGETGAGKSIIIDALGLLL 46


>gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC
          (ATP-binding cassette) transporter nucleotide-binding
          domain; ABC transporters are a large family of proteins
          involved in the transport of a wide variety of
          different compounds including sugars, ions, peptides,
          and more complex organic molecules.  The nucleotide
          binding domain shows the highest similarity between all
          members of the family.  ABC transporters are a subset
          of nucleotide hydrolases that contain a signature
          motif, Q-loop, and H-loop/switch region, in addition
          to, the Walker A motif/P-loop and Walker B motif
          commonly found in a number of ATP- and GTP-binding and
          hydrolyzing proteins..
          Length = 276

 Score = 28.6 bits (64), Expect = 1.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 19 LTIELNNRIILNNINLDILRGEILGVI-GSSGTGKSILMRGILGLI 63
          L + + N  ++  + LD   G  L V+ G +G GKSIL+  +  L+
Sbjct: 2  LELSIKNFALIEELELDFEEG--LTVLTGETGAGKSILLDALSLLL 45


>gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
          helicases. Helicases couple NTP hydrolysis to the
          unwinding of nucleic acid duplexes into their component
          strands..
          Length = 271

 Score = 28.3 bits (63), Expect = 1.8
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGIL 60
          LN +   + +GE++ +   +G GK+  +R   
Sbjct: 20 LNKLTKGLRKGELIILTAGTGVGKTTFLREYA 51


>gnl|CDD|31434 COG1241, MCM2, Predicted ATPase involved in replication control,
           Cdc46/Mcm family [DNA replication, recombination, and
           repair].
          Length = 682

 Score = 28.4 bits (63), Expect = 1.9
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 37  LRGEI-LGVIGSSGTGKSILMRGILGLIPRV 66
           +RG+I + ++G  GT KS L++ +  L PR 
Sbjct: 316 IRGDIHILLVGDPGTAKSQLLKYVAKLAPRG 346


>gnl|CDD|107371 cd06376, PBP1_mGluR_groupIII, Ligand-binding domain of the group
           III metabotropic glutamate receptor.  Ligand-binding
           domain of the group III metabotropic glutamate receptor,
           a family which contains mGlu4R, mGluR6R, mGluR7, and
           mGluR8; all of which inhibit adenylyl cyclase. The
           metabotropic glutamate receptor is a member of the
           family C of G-protein-coupled receptors that transduce
           extracellular signals into G-protein activation and
           ultimately into intracellular responses. The mGluRs are
           classified into three groups which comprise eight
           subtypes.
          Length = 463

 Score = 28.3 bits (63), Expect = 2.1
 Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 2/30 (6%)

Query: 40  EILGVIGSSGTGKSILMRGILGL--IPRVS 67
           +++GVIG+S +  SI++  IL L  IP++S
Sbjct: 103 KVVGVIGASASSVSIMVANILRLFQIPQIS 132


>gnl|CDD|147409 pfam05201, GlutR_N, Glutamyl-tRNAGlu reductase, N-terminal domain. 
          Length = 150

 Score = 28.3 bits (64), Expect = 2.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 7/38 (18%)

Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRV 221
            + EE ++ L +L+   G+S  +I       +STCNRV
Sbjct: 18  FSDEELEEALEELKALPGVSEAVI-------LSTCNRV 48


>gnl|CDD|33687 COG3899, COG3899, Predicted ATPase [General function prediction
          only].
          Length = 849

 Score = 28.0 bits (62), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 38 RGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
          RGE++ V G SG GKS L+  +   I +  G  
Sbjct: 23 RGEVVLVAGESGIGKSALVNEVHKPITQQRGYF 55


>gnl|CDD|33697 COG3910, COG3910, Predicted ATPase [General function prediction
           only].
          Length = 233

 Score = 27.6 bits (61), Expect = 3.1
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 171 LLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209
           +  LDEP + L P    E   +L  L  S G  + + TH
Sbjct: 149 IYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATH 186


>gnl|CDD|35679 KOG0458, KOG0458, KOG0458, Elongation factor 1 alpha [Translation,
           ribosomal structure and biogenesis].
          Length = 603

 Score = 27.7 bits (61), Expect = 3.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 42  LGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L V+G    GKS LM  +L  +  +S       E  +   GK +FA+
Sbjct: 180 LVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAY 226


>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
          biogenesis [Translation, ribosomal structure and
          biogenesis].
          Length = 1077

 Score = 27.4 bits (60), Expect = 3.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 41 ILGVIGSSGTGKSILMRGIL 60
          I+ V+G  GTGKS L+R ++
Sbjct: 71 IVAVVGPPGTGKSTLIRSLV 90


>gnl|CDD|143799 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
          nucleotide-binding domain.  This family includes the
          ATP synthase alpha and beta subunits, the ATP synthase
          associated with flagella and the termination factor
          Rho.
          Length = 213

 Score = 27.4 bits (62), Expect = 4.5
 Identities = 10/21 (47%), Positives = 17/21 (80%)

Query: 36 ILRGEILGVIGSSGTGKSILM 56
          I +G+ +G+ G SGTGK++L+
Sbjct: 12 IGKGQRIGIFGGSGTGKTVLL 32


>gnl|CDD|73327 cd02762, MopB_1, The MopB_1 CD includes a group of related
           uncharacterized bacterial molybdopterin-binding
           oxidoreductase-like domains with a putative N-terminal
           iron-sulfur [4Fe-4S] cluster binding site and
           molybdopterin cofactor binding site. These members
           belong to the molybdopterin_binding (MopB) superfamily
           of proteins..
          Length = 539

 Score = 27.2 bits (60), Expect = 4.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 64  PRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHG 99
           PR +   K+  EHL +  G   +  +A L VL   G
Sbjct: 199 PRRTETAKLADEHLFVRPGTDAWLLAAMLAVLLAEG 234


>gnl|CDD|133292 cd01892, Miro2, Miro2 subfamily.  Miro (mitochondrial Rho)
          proteins have tandem GTP-binding domains separated by a
          linker region containing putative calcium-binding EF
          hand motifs.  Genes encoding Miro-like proteins were
          found in several eukaryotic organisms.  This CD
          represents the putative GTPase domain in the C terminus
          of Miro proteins.  These atypical Rho GTPases have
          roles in mitochondrial homeostasis and apoptosis.  Most
          Rho proteins contain a lipid modification site at the
          C-terminus; however, Miro is one of few Rho subfamilies
          that lack this feature.
          Length = 169

 Score = 27.2 bits (61), Expect = 4.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 44 VIGSSGTGKSILMRGILG 61
          V+G+ G+GKS L+R  LG
Sbjct: 9  VLGAKGSGKSALLRAFLG 26


>gnl|CDD|146036 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
          protein B.  This protein contains a P-loop.
          Length = 122

 Score = 27.3 bits (61), Expect = 4.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 41 ILGVIGSSGTGKSILMRGIL 60
          I+ V+G   +GK+ L+R +L
Sbjct: 2  IVLVVGPKDSGKTTLIRKLL 21


>gnl|CDD|30098 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
           subgroup. Members of this group might play a role in
           regulating chromosomal movement along microtubules in
           mitosis. This catalytic (head) domain has ATPase
           activity and belongs to the larger group of P-loop
           NTPases. Kinesins are microtubule-dependent molecular
           motors that play important roles in intracellular
           transport and in cell division. In most kinesins, the
           motor domain is found at the N-terminus (N-type). N-type
           kinesins are (+) end-directed motors, i.e. they
           transport cargo towards the (+) end of the microtubule.
           Kinesin motor domains hydrolyze ATP at a rate of about
           80 per second, and move along the microtubule at a speed
           of about 6400 Angstroms per second. To achieve that,
           kinesin head groups work in pairs. Upon replacing ADP
           with ATP, a kinesin motor domain increases its affinity
           for microtubule binding and locks in place. Also, the
           neck linker binds to the motor domain, which repositions
           the other head domain through the coiled-coil domain
           close to a second tubulin dimer, about 80 Angstroms
           along the microtubule. Meanwhile, ATP hydrolysis takes
           place, and when the second head domain binds to the
           microtubule, the first domain again replaces ADP with
           ATP, triggering a conformational change that pulls the
           first domain forward..
          Length = 319

 Score = 27.2 bits (60), Expect = 4.6
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 46  GSSGTGKSILMRGIL---GLIPRVSGEVKVLGE 75
           GS+G GK+  M G     GLIPR   ++  +G 
Sbjct: 88  GSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGR 120


>gnl|CDD|29993 cd01127, TrwB, Bacterial conjugation protein TrwB,  ATP binding
          domain. TrwB is a homohexamer encoded by conjugative
          plasmids in Gram-negative bacteria. TrwB also has an
          all alpha domain which has been hypothesized to be
          responsible for DNA binding. TrwB is a component of
          Type IV secretion and is responsible for the horizontal
          transfer of DNA between bacteria..
          Length = 410

 Score = 27.2 bits (60), Expect = 5.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 42 LGVIGSSGTGKSILMRGIL 60
            +IG++GTGK+  +R +L
Sbjct: 45 TMIIGTTGTGKTTQIRELL 63


>gnl|CDD|145244 pfam01964, ThiC, ThiC family.  ThiC is found within the thiamine
           biosynthesis operon. ThiC is involved in pyrimidine
           biosynthesis. The precise catalytic function of ThiC is
           still not known. ThiC participates in the formation of
           4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an
           intermediate in the de novo pyrimidine biosynthesis.
          Length = 421

 Score = 26.7 bits (60), Expect = 6.3
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 31/74 (41%)

Query: 116 KEHLNLP--ADLIEHIVHTKIA-----IVGLPPETANLMPFQLSGGMIKR---VSLAR-- 163
            EHL LP   D+ E ++  KIA     +    P            G  +R   +S AR  
Sbjct: 327 AEHLGLPNVEDVREGVIAYKIAAHAADLAKGRP------------GARERDDAMSKARKD 374

Query: 164 -------ALAIDPD 170
                   LA+DP+
Sbjct: 375 LDWEKQFELALDPE 388


>gnl|CDD|33963 COG4240, COG4240, Predicted kinase [General function prediction
          only].
          Length = 300

 Score = 26.5 bits (58), Expect = 7.3
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 2  QLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILG 61
              +P     +   ++L + L  +I          R  I+G+ G  G+GKS L   I+ 
Sbjct: 17 DQERLPPAFAAL--AQDLHLPLLAKIAPWAQERG--RPLIVGISGPQGSGKSTLSALIVR 72

Query: 62 LIPRVSGE 69
          L+     E
Sbjct: 73 LLAAKGLE 80


>gnl|CDD|35701 KOG0480, KOG0480, KOG0480, DNA replication licensing factor, MCM6
           component [Replication, recombination and repair].
          Length = 764

 Score = 26.4 bits (58), Expect = 7.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 37  LRGEI-LGVIGSSGTGKSILMRGILGLIPR---VSG 68
           LRG+I + ++G  GTGKS  ++ +    PR    SG
Sbjct: 375 LRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSG 410


>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD).  Cinnamyl
           alcohol dehydrogenases (CAD), members of the medium
           chain dehydrogenase/reductase family, reduce
           cinnamaldehydes to cinnamyl alcohols in the last step of
           monolignal metabolism in plant cells walls. CAD binds 2
           zinc ions and is NADPH- dependent. CAD family members
           are also found in non-plant species, e.g. in yeast where
           they have an aldehyde reductase activity. The medium
           chain dehydrogenases/reductase (MDR)/zinc-dependent
           alcohol dehydrogenase-like family, which contains the
           zinc-dependent alcohol dehydrogenase (ADH-Zn) and
           related proteins, is a diverse group of proteins related
           to the first identified member, class I mammalian ADH.
           MDRs display a broad range of activities and are
           distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol  dehydrogenases
           (ADHs) catalyze the NAD(P)(H)-dependent interconversion
           of alcohols to aldehydes or ketones.  Active site zinc
           has a catalytic role, while structural zinc aids in
           stability.  ADH-like proteins  typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and generally have 2 tightly bound zinc atoms
           per subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 337

 Score = 26.3 bits (59), Expect = 7.8
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 9/53 (16%)

Query: 110 NISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLA 162
           + S  +  +L+L            + +VG P E   + PF L   +  R S+A
Sbjct: 241 SASHDLDPYLSLLK------PGGTLVLVGAPEEPLPVPPFPL---IFGRKSVA 284


>gnl|CDD|110677 pfam01695, IstB, IstB-like ATP binding protein.  This protein
          contains an ATP/GTP binding P-loop motif. It is found
          associated with IS21 family insertion sequences. The
          function of this protein is unknown, but it may perform
          a transposase function.
          Length = 178

 Score = 26.5 bits (59), Expect = 8.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 23 LNNRIILNNINLD-ILRGEILGVIGSSGTGKSIL 55
          L+ R+I     LD I + E L ++G  G GK+ L
Sbjct: 30 LDRRLIAELAGLDWIEQAENLLLLGPPGVGKTHL 63


>gnl|CDD|31432 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
          Length = 423

 Score = 26.5 bits (58), Expect = 8.3
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 34 LDILRGEILGVI--GSSGTGKSILMRGILGLIP 64
          L+ +  +I G +  G  GT KS L R +  L+P
Sbjct: 31 LNAVDPQIGGALIAGEKGTAKSTLARALADLLP 63


>gnl|CDD|31066 COG0722, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP)
           synthase [Amino acid transport and metabolism].
          Length = 351

 Score = 26.3 bits (58), Expect = 8.7
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 139 LPPETANLMPFQLSGGMIKRVSLAR--ALAI----DPDLLFLDEPTSGLDPIAAEEFDKL 192
           L         F LS    + V+ +R     I    D  LL +  P S  DP AA E+ + 
Sbjct: 16  LITPAELKAEFPLSDEAAETVAQSRKEIEDILHGEDDRLLVVIGPCSIHDPEAALEYARR 75

Query: 193 LIKLRHSLGLSVYMI 207
           L  LR  L   + ++
Sbjct: 76  LKALREELKDRLEIV 90


>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family.  The
           medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P)-binding Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones.  Active site zinc has
           a catalytic role, while structural zinc aids in
           stability.  ADH-like proteins typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and generally have 2 tightly bound zinc atoms
           per subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 341

 Score = 26.1 bits (58), Expect = 8.7
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 125 LIEHIV-----HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPD 170
           LI+ I+       +I +VG+  E+ N+ P      + K ++L  +L   P+
Sbjct: 246 LIQQIIEGAPPGGRIVVVGVCMESDNIEPAL---AIRKELTLQFSLGYTPE 293


>gnl|CDD|145608 pfam02562, PhoH, PhoH-like protein.  PhoH is a cytoplasmic
          protein and predicted ATPase that is induced by
          phosphate starvation.
          Length = 205

 Score = 26.3 bits (59), Expect = 8.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 36 ILRGEILGVIGSSGTGKSIL 55
          I + +I+  IG +GTGK+ L
Sbjct: 16 IRKNDIVFGIGPAGTGKTYL 35


>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
          Magnesium-chelatase is a three-component enzyme that
          catalyses the insertion of Mg2+ into protoporphyrin IX.
          This is the first unique step in the synthesis of
          (bacterio)chlorophyll. Due to this, it is thought that
          Mg-chelatase has an important role in channelling
          inter- mediates into the (bacterio)chlorophyll branch
          in response to conditions suitable for photosynthetic
          growth. ChlI and BchD have molecular weight between
          38-42 kDa.
          Length = 207

 Score = 26.3 bits (59), Expect = 9.0
 Identities = 8/25 (32%), Positives = 18/25 (72%)

Query: 45 IGSSGTGKSILMRGILGLIPRVSGE 69
          IG  G+GK++L + + G++P ++ +
Sbjct: 28 IGPPGSGKTMLAKRLPGILPPLTEQ 52


>gnl|CDD|109538 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family.  In
          Arabidopsis the region carries two binding domains, a
          phosphoribosylpyrophosphate-binding domain and, at the
          very C-terminus, a uracil-binding domain.
          Length = 196

 Score = 26.2 bits (58), Expect = 9.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 41 ILGVIGSSGTGKSILMRGI 59
          I+GV GSSG GK+ + R  
Sbjct: 1  IIGVAGSSGAGKTTVARTF 19


>gnl|CDD|144183 pfam00493, MCM, MCM2/3/5 family. 
          Length = 327

 Score = 26.0 bits (58), Expect = 9.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 36 ILRGEI-LGVIGSSGTGKSILMRGILGLIPR---VSG 68
           LRG+I + ++G  GT KS L++ +  L PR    SG
Sbjct: 53 RLRGDINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSG 89


>gnl|CDD|73395 cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN
           binding domain, group 2.  Each monomer of OYE contains
           FMN as a non-covalently bound cofactor, uses NADPH as a
           reducing agent with oxygens, quinones, and
           alpha,beta-unsaturated aldehydes and ketones, and can
           act as electron acceptors in the catalytic reaction.
           Other members of OYE family include trimethylamine
           dehydrogenase, 2,4-dienoyl-CoA reductase, enoate
           reductase, pentaerythriol tetranitrate reductase,
           xenobiotic reductase, and morphinone reductase..
          Length = 338

 Score = 26.3 bits (58), Expect = 9.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDL 171
           A+ I  +  T + + G    T   M   L+ G +  + LAR LA++PDL
Sbjct: 284 AEKIRKVTKTPLMVTG-GFRTRAAMEQALASGAVDGIGLARPLALEPDL 331


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.139    0.391 

Gapped
Lambda     K      H
   0.267   0.0842    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,086,895
Number of extensions: 167667
Number of successful extensions: 1025
Number of sequences better than 10.0: 1
Number of HSP's gapped: 819
Number of HSP's successfully gapped: 286
Length of query: 257
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,275,709
Effective search space: 705491985
Effective search space used: 705491985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.1 bits)