BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus Liberibacter asiaticus str. psy62] (257 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 516 bits (1328), Expect = e-148, Method: Compositional matrix adjust. Identities = 257/257 (100%), Positives = 257/257 (100%) Query: 1 MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL 60 MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL Sbjct: 1 MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL 60 Query: 61 GLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLN 120 GLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLN Sbjct: 61 GLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLN 120 Query: 121 LPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180 LPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG Sbjct: 121 LPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180 Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD Sbjct: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 Query: 241 SNDPWIRSYFNRFTKRI 257 SNDPWIRSYFNRFTKRI Sbjct: 241 SNDPWIRSYFNRFTKRI 257 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 105 bits (263), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 126/232 (54%), Gaps = 21/232 (9%) Query: 3 LNNIPSQEEKILSVRNLTIELN------NRIILNNINLDILRGEILGVIGSSGTGKSILM 56 + NI ++ ++L ++++ + N ++L+ +N ++ GEI+G++G SG+GKS L+ Sbjct: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60 Query: 57 RGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIK 116 R I GL+ SG+V L KGK+ + V+FQ ALF +TV EN+ + +K Sbjct: 61 RIIAGLVSPSSGQV--------LFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLK 112 Query: 117 EHLNLPADLIEHIVHTKIAIVGLPP-ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLD 175 + + + I ++GL E+A+ ++SGGM++RV ARA + P LL +D Sbjct: 113 AK-GIDKEERRKRALSAIDLIGLDGFESAHTT--EISGGMLQRVGFARAFVVFPSLLLMD 169 Query: 176 EPTSGLDPIAAEEFDKLLIKLRHSLGL---SVYMITHDLNNLISTCNRVAVI 224 EP S LD + AE LI L L S+ M+TH++ + C+RV V Sbjct: 170 EPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 >gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 102 bits (253), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 131/246 (53%), Gaps = 25/246 (10%) Query: 8 SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67 + ++ +LS +LT + N+ ++ ++L + GEI+G++G +G GK+ + GLI S Sbjct: 20 ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS 79 Query: 68 GEVKVLGEHLNLAKGKQNFAFSAKLGVLF--QHGALFSSMTVQENISMPI--------KE 117 G +K+ G + K A+LG+ + Q ++F +TV+ENI + K Sbjct: 80 GSIKIDGNDIT----KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR 135 Query: 118 HLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEP 177 H L + L E + TK V L P LSGG +R+ +AR+L P + LDEP Sbjct: 136 HEKLDSLLKEFNI-TKWRHV--------LAPL-LSGGQRRRLEIARSLVSFPSYILLDEP 185 Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISD 237 +G+DP+A + +LI+ S G+ + + H+++ +++ +R +I G++ GT+ + Sbjct: 186 FAGVDPVAISDI-HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244 Query: 238 IVDSND 243 I+D+ D Sbjct: 245 IIDNQD 250 >gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 101 bits (252), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 114/217 (52%), Gaps = 17/217 (7%) Query: 33 NLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQN-FAFSAK 91 NL++ +GEIL ++G SG GKS L+R I GL P V GEV V + KG N +A A Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV-----DTDKGFVNPYAADAN 103 Query: 92 L---------GVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPE 142 + ++FQ AL TV N+ + + E L++P + V + IV L + Sbjct: 104 VLRKLRMHTVSMVFQQFALLPWRTVARNVELGL-EFLDIPDVERKSRVAEHLEIVNLT-K 161 Query: 143 TANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGL 202 A+ LSGGM +RV ARA A +L +DEP S LDP+ L+ L+ L Sbjct: 162 WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221 Query: 203 SVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239 ++ ++HD+N NR+A+++ I++ GT +I+ Sbjct: 222 TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 85.1 bits (209), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 20/226 (8%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L +INL++LRGE + + G SG+GKS L+R I + +GE+ + G LN + Sbjct: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN-DDIRNIHEV 91 Query: 89 SAKLGVLFQHGALFSSMTVQENISM-PIKEHLNLPADLIEHIVH--TKIAIVGLPPETAN 145 +G++FQH LFS+++V EN ++ PI D E +H K+ I + ++ Sbjct: 92 RRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIA----DKSH 147 Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205 LSGG +R ++AR+L + P ++ DEPTS LDP +E ++I+L G+++ Sbjct: 148 RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMTMV 206 Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYFN 251 +TH++ +RV M +G IV+ N P +FN Sbjct: 207 CVTHEMGFARQVADRVV------FMDQG---QIVEQNSP--EEFFN 241 >gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 81.3 bits (199), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 111/214 (51%), Gaps = 15/214 (7%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV-----SGEVKVLGEHLNLAKGK 83 L +INL I + + +IG SG GKS +R + + + +GE+ + G+++ Sbjct: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI-YQSSV 80 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHL--NLPADLIEHIVHTKIAIVGLPP 141 A++G++FQ F ++ +N++ + H N AD I+ IV + L Sbjct: 81 DVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKAD-IDQIVEMSLKKASLFN 138 Query: 142 ETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198 E + + LSGG +RV +ARALA++P+++ +DEP S LDPIA ++L+ +LR Sbjct: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE 198 Query: 199 SLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232 S L++ ++TH + R A+ +++E Sbjct: 199 S--LTIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230 >gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 234 Score = 81.3 bits (199), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 9/204 (4%) Query: 31 NINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE-HLNLAKGKQNFAFS 89 + + + E + ++G SG GKS L+ + G G + + G+ H + K+ Sbjct: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKR----- 71 Query: 90 AKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPF 149 L +LFQ LFS +TV +NI++ I +L L D +H ++ + N P Sbjct: 72 -PLSILFQENNLFSHLTVWQNIALGIAPNLRL--DHYQHAQVKQMLEKVFLEDFFNRFPS 128 Query: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209 Q+SGG +RV+LAR L +L LDEP + DP E LL ++ L++ MI+H Sbjct: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188 Query: 210 DLNNLISTCNRVAVIQKKGIMKEG 233 +L + + R VI I+ +G Sbjct: 189 NLEDSMQIATRFIVIAGGQIVYDG 212 >gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 75.1 bits (183), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 111/221 (50%), Gaps = 28/221 (12%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGL--IPRVSGEVKVLGEHLN-LAKGKQ 84 +L N++L + +GEI+ ++ SGTGKS ++ I GL +P G V + + N L+ K+ Sbjct: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPD-QGNVIIANQLCNKLSDDKK 82 Query: 85 NFAFSAKLGVLFQHGALFSSMTVQENISMPI-------KEHLNLPADLIEHIVHTKIAIV 137 +F +K+G ++Q L +V ENI P K DL+ ++ + Sbjct: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMS----- 137 Query: 138 GLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197 + AN +SGG +RV++ RA+A P ++ DEPT LD A++ +L L Sbjct: 138 ----QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193 Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 GL+ + TH+ ++L S +R I ++G I+D+ Sbjct: 194 VRSGLAALIATHN-HDLASQMDRQITI------RDGMIADL 227 >gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 240 Score = 72.4 bits (176), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 27/245 (11%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 ++S+ N + N IL +IN I EI+ +IG +G+GKS + + I G+I G VK Sbjct: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK- 68 Query: 73 LGEHLNLAKG--KQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130 H L G Q L + +L MT +SMP D+++ + Sbjct: 69 --RHPQLIVGYVPQKVTIENTLPL-----SLMRFMT----LSMPSSRD-----DVLQ--I 110 Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190 ++ ++G N LSGG +R LA+AL P+LL LDEP G+D Sbjct: 111 LDRVNLIG----KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166 Query: 191 KLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYF 250 +L+ +R S G + +I+H+L+ ++++ + V + + I +G I D N +IR + Sbjct: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNR-ICYQGPPQTIKD-NAEYIRLFG 224 Query: 251 NRFTK 255 R T+ Sbjct: 225 TRATE 229 >gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 67.8 bits (164), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 10/223 (4%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83 N L ++NL I I +IG +G GKS L + I+GLIP G + + + + A Sbjct: 23 NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKA 82 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLN---LPADLIEHIVHTKIAIVGLP 140 A+ + + + V++ + M +H+N + ++ IV + VG+ Sbjct: 83 DLIAYIPQTESIDWTFPIL----VEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMS 138 Query: 141 PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL 200 + +LS G KRV LARALA ++ +DEP + +D E LL L + Sbjct: 139 SMRQRQIG-ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE- 196 Query: 201 GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243 + + + TH++N++ S C+R + KK ++ G SDI + ++ Sbjct: 197 DIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIFNEDN 238 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 60.1 bits (144), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 109/236 (46%), Gaps = 32/236 (13%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 +L +T + ++R+++ + +L I GE +G++G +G GK+ L++ + G I G + Sbjct: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI-T 342 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIK-EHLNLPADLIEHIVH 131 LG +L +A K + +L S +T S+ ++ E ++ + + + H Sbjct: 343 LGTNLKIA------TIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFH 396 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 P+ A+ + LSGG R +AR LA + L +DEPT+ LD + ++ Sbjct: 397 ---------PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLER 447 Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247 + +L+ ++ +++HD + L T Q +I D N WI+ Sbjct: 448 TITQLQG----TILIVSHDRDFLDRTVTSTIAAQ-----------NIEDPNGYWIK 488 Score = 45.8 bits (107), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 27/203 (13%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87 +L ++ L I E + ++G +G+GKS L++ G+ SG V + Sbjct: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS------------- 66 Query: 88 FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147 S++LG L Q+ L T+ + I IK+ + P ++ +++ Sbjct: 67 -SSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAP--------YSPYSLLKKFNLREQDR 117 Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207 LS G + V+L + L PD+L LDEPT+ LD ++ L+K+ +L + Sbjct: 118 IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSAL----IFV 173 Query: 208 THDLNNLISTCNRVAVIQKKGIM 230 +HD + T + V +G + Sbjct: 174 SHD-RRFLETLSTTTVWLDRGCL 195 >gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 539 Score = 53.1 bits (126), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 30/203 (14%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 ++ + ++ N+R++++N++ + G I+GVIG +G GK+ L R + G SG + V Sbjct: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE---HI 129 GE + L+ Q+ +L + TV E+IS D+++ H Sbjct: 377 -GETVCLSYVDQS------------RDSLEAEKTVWEDISG--------GDDIVKLNGHE 415 Query: 130 VHTKIAIVGLPPETANLMPF--QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187 ++++ + + LSGG RV LA+ L +++ LDEPT+ LD E Sbjct: 416 INSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD---TE 472 Query: 188 EFDKLLIKLRHSLGLSVYMITHD 210 L L + G +V +I+HD Sbjct: 473 TLSALEDALENFAGCAV-IISHD 494 Score = 50.8 bits (120), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 111/252 (44%), Gaps = 46/252 (18%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 I + L+ ++ +L++INL +G++G +G GKS ++R + G+ +GE Sbjct: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW- 64 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI--------------------- 111 LA G F+ +G L Q L S TV+ENI Sbjct: 65 ------LATG-----FT--VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNY 111 Query: 112 SMPIKEHLNLPADLIEHI------VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARAL 165 S +E + D+I+ ++AI L L LSGG +RV+L + L Sbjct: 112 SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171 Query: 166 AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQ 225 PDLL LDEPT+ LD AE + LR G +V M+THD L + N + + Sbjct: 172 LSSPDLLLLDEPTNHLD---AETIAWMEKYLREYSG-AVLMVTHDRYFLDNVTNWILEVD 227 Query: 226 K-KGIMKEGTIS 236 + KGI +G S Sbjct: 228 RGKGIPYQGNYS 239 >gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane subunits [Candidatus Liberibacter asiaticus str. psy62] Length = 528 Score = 52.4 bits (124), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 14/216 (6%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83 + R IL N+N + GE + ++G SG GK+ + IL SG V++ G L L + Sbjct: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISM----PIKEHLNLPADLIEHIVHTKIAIVGL 139 + F A + QH + ++ +V +NI++ ++ + A L + H I + Sbjct: 361 EIRRFIAWVP---QHPIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQ--AHEFIGCLEN 414 Query: 140 PPETA-NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198 +T LS G I+R+++ARA+ D +L LDE S LD ++ K+L + R Sbjct: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR 474 Query: 199 SLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 G + +H L+ I + V V+ + I+++G Sbjct: 475 --GRTTIFASHRLSA-IQDADMVFVLHDQVIVEKGV 507 >gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62] Length = 565 Score = 51.6 bits (122), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 34/228 (14%) Query: 3 LNNIPSQEEKI-LSVRNLTIELNN---------RIILNNINLDILRGEILGVIGSSGTGK 52 LN+ S++E I + + N TI N R+I N++ I G + G SG GK Sbjct: 312 LNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGK 371 Query: 53 SILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNF--AFSAKLGVLFQHGALFSSMTVQEN 110 S + +LGL+ G + ++ ++F FSA++G L QH +LF +++ EN Sbjct: 372 SNFLLCMLGLLTLEKGTISFGDRQIS-----RDFIEKFSAQIGYLSQHCSLF-PISITEN 425 Query: 111 ISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL--------MPFQLSGGMIKRVSLA 162 I + ++ HI IVG + +L ++ +++++ L+ Sbjct: 426 IILSHDQNS-------LHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS 478 Query: 163 RALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210 R +A +P +L +DEP LD A F LL + + + ++ +I+HD Sbjct: 479 RIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIISHD 525 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 50.1 bits (118), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 21/197 (10%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87 +L+ INL G++ ++G SG+GKS ++ ++ + SG +++ G ++ ++ Sbjct: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI------RDIT 421 Query: 88 FSA---KLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA---IVGLPP 141 FS+ ++ + Q LFS+ TV+ NI I + ++IE I + A I+ LP Sbjct: 422 FSSLRERISYVGQDVFLFSN-TVRYNI--LIGRPMATEEEMIE-IAKSANAHDFIMSLPQ 477 Query: 142 ETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198 + LSGG +R+++ARA+ D +L LDE TS LD + L +L Sbjct: 478 GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ 537 Query: 199 SLGLSVYMITHDLNNLI 215 G + +I H ++ +I Sbjct: 538 --GRTTIVIAHRISTII 552 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 48.5 bits (114), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 22/242 (9%) Query: 12 KILSVRNLTIELNN--------RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI 63 K L ++N I NN I I+ +I + +IG SG GKS + + + L Sbjct: 348 KDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLY 407 Query: 64 PRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM--PIKEHLNL 121 G + + G+ + K + +G++ Q LF+ T++ NI P L Sbjct: 408 DIKGGIITIDGQDI---KKITKESLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQEL 463 Query: 122 PADLIEHIVHTKIAIVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPT 178 A + + K I+ LP ++ +LSGG +RVS+ARA+ +P ++ DE T Sbjct: 464 CAAV--EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEAT 521 Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 S LD I L L S + +I H L+ I+ + + V + +++ G+ ++ Sbjct: 522 SSLDIITERHIQTALATL--SKNRTTLVIAHRLST-ITDADNIIVFDQGTVVESGSHENL 578 Query: 239 VD 240 + Sbjct: 579 IS 580 >gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 959 Score = 35.8 bits (81), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 15/119 (12%) Query: 102 FSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAI---VGLPPETANLMPFQLSGGMIKR 158 F ++ + +SM + E L+ A + +H K+ VGL LSGG +R Sbjct: 796 FKDKSIADVLSMTVDESLDFFAAI--PTIHNKLTTLKEVGLGYIKIGQSANTLSGGESQR 853 Query: 159 VSLARAL---AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL---GLSVYMITHDL 211 V LA+ L A L LDEPT+GL + KLL + H+L G S+ +I H+L Sbjct: 854 VKLAKELSKQATGNTLYILDEPTTGLH---YHDIAKLL-NILHTLVDRGNSIIVIEHNL 908 Score = 26.2 bits (56), Expect = 0.60, Method: Compositional matrix adjust. Identities = 13/40 (32%), Positives = 26/40 (65%) Query: 16 VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSIL 55 ++N++I L NI++++ R +++ + G SG+GKS L Sbjct: 4 IKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43 >gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 249 Score = 27.3 bits (59), Expect = 0.29, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 12/96 (12%) Query: 151 LSGGMIKRVSLARALAIDPDLLFLDEPTSGLD----PIAAEEFDKLLIKLRHSLGLSVYM 206 SGG K + + ++P L LDE SGLD IAA+ + L S S + Sbjct: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL-----RSQDRSFLI 202 Query: 207 ITH--DLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 ITH L N I + + V+ I+K G S +D Sbjct: 203 ITHYQRLLNYIKP-DTIHVLHNGKIIKTGDYSIALD 237 >gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 573 Score = 25.4 bits (54), Expect = 0.96, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 142 ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 E LMP I R S+ A+ + PDL F++ G+D Sbjct: 480 EARWLMPMLCRSSGINRQSIG-AIRVQPDLTFVEVSADGVD 519 >gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter asiaticus str. psy62] Length = 623 Score = 23.9 bits (50), Expect = 2.6, Method: Compositional matrix adjust. Identities = 11/38 (28%), Positives = 21/38 (55%) Query: 15 SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGK 52 S+++ + +L N + + + D L E+L +GS G K Sbjct: 30 SIKDYSRQLTNIFLKDKVFFDGLEQELLASLGSMGQEK 67 >gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 23.5 bits (49), Expect = 3.7, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMR 57 R IL+ NLD+++GE+ G SI+M+ Sbjct: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQ 140 >gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 518 Score = 23.1 bits (48), Expect = 5.0, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Query: 163 RALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR-HSLGLSVYMITHDLNNLISTCNRV 221 + L +D + LD +S + P+ L KLR + L S + D+NNL + + Sbjct: 368 KKLNLDFYMFPLDYSSSDISPLLG-----LSEKLRLYPLLFSDALFHQDINNLENVSAIL 422 Query: 222 AVIQKKGIMKEGT 234 +I G M GT Sbjct: 423 NIIDDSGFMGSGT 435 >gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 23.1 bits (48), Expect = 5.3, Method: Compositional matrix adjust. Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 33/187 (17%) Query: 31 NINLDILRGEILGVIGSSGTGKSILM----RGILGLIPR-------VSGEVKVLGEHLNL 79 +IN+D + ++ G SGTGK+ L R ++G + E + +NL Sbjct: 210 SINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINL 269 Query: 80 AKGKQN--FAFSAKLGVLFQHGAL-------FSSMTVQENI--SMPIKE-HLNLPADLIE 127 +K + F+ S + G + ++ + F +V EN + P+ H + P + + Sbjct: 270 SKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGK 329 Query: 128 HIVHT---KIAIVGLPPETANLMP----FQLSGGMIKRVSLARALAIDPDLLF---LDEP 177 H H G+ P A L P + G +V+ + P+ F P Sbjct: 330 HPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAP 389 Query: 178 TSGLDPI 184 DP+ Sbjct: 390 FMPRDPV 396 >gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str. psy62] Length = 554 Score = 22.7 bits (47), Expect = 6.0, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 12/64 (18%) Query: 21 IELNNRIILNNINLDILRGEILGVI-GSSGTGKSILM---------RGILGLIPRVSGEV 70 + + N +++ ++++D G L ++ G +G+GKSIL+ RG GL+ R + + Sbjct: 4 LSIYNIVLIESLDIDFSAG--LSILSGDTGSGKSILLDALILVTGGRGDGGLVRRHAEKG 61 Query: 71 KVLG 74 +V+ Sbjct: 62 QVVA 65 >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 22.3 bits (46), Expect = 7.9, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 18 NLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRG-ILGLIPRVS 67 +L I L I I D+ R L + G++G+GKS+ + IL L+ R++ Sbjct: 433 DLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483 >gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] Length = 1775 Score = 22.3 bits (46), Expect = 8.6, Method: Compositional matrix adjust. Identities = 10/28 (35%), Positives = 17/28 (60%) Query: 34 LDILRGEILGVIGSSGTGKSILMRGILG 61 +D++ G+ L + G GTGKS + I+ Sbjct: 414 IDVINGKNLIIEGPPGTGKSQTITNIIA 441 >gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 22.3 bits (46), Expect = 9.6, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 13/21 (61%) Query: 36 ILRGEILGVIGSSGTGKSILM 56 + G+ +GV SG GKS L+ Sbjct: 158 LCHGQRIGVFAGSGIGKSTLL 178 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.139 0.391 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 169,111 Number of Sequences: 1233 Number of extensions: 7272 Number of successful extensions: 85 Number of sequences better than 100.0: 29 Number of HSP's better than 100.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 39 length of query: 257 length of database: 328,796 effective HSP length: 72 effective length of query: 185 effective length of database: 240,020 effective search space: 44403700 effective search space used: 44403700 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 37 (18.9 bits)