HHsearch alignment for GI: 254780140 and conserved domain: smart00283
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=98.00 E-value=0.0016 Score=42.52 Aligned_cols=75 Identities=9% Similarity=0.201 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55544444431012577898889889999987755323332223333210145677777765543322211122344
Q gi|254780140|r 253 FVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAFLENIADSTSNMRSSISAIREITDQRQKII 329 (452)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (452)
T Consensus 79 ~~~~~~~l~~~~~~I~~i~~~I~~Ia~QTn--LLALNAaIEAARAGE~GrGFAVVA~EIr~LA~~t~~a~~~I~~~i 153 (262)
T smart00283 79 AVSAVEELEESSDEIGEIVSVIDDIADQTN--LLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLI 153 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999987--777516888875487786489999999999999999999999999