Query gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 452 No_of_seqs 295 out of 2333 Neff 11.7 Searched_HMMs 23785 Date Sun May 22 07:30:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780140.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2ch7_A Methyl-accepting chemot 97.8 0.002 8.3E-08 40.3 23.1 23 408-430 273-295 (309) 2 1qu7_A Methyl-accepting chemot 97.1 0.014 6E-07 34.3 23.1 166 256-430 57-223 (227) 3 2ch7_A Methyl-accepting chemot 96.5 0.038 1.6E-06 31.3 26.7 29 407-435 265-293 (309) 4 1qu7_A Methyl-accepting chemot 96.1 0.066 2.8E-06 29.7 21.1 25 408-432 194-218 (227) 5 2nrj_A HBL B protein; enteroto 84.6 1.5 6.3E-05 20.2 12.4 25 374-398 271-295 (346) 6 2j5u_A MREC protein; bacterial 80.2 2.2 9.1E-05 19.1 5.6 27 47-73 92-118 (255) 7 3ghg_C Fibrinogen gamma chain; 73.9 3.2 0.00013 17.9 11.4 27 406-432 108-134 (411) 8 1lvf_A Syntaxin 6; snare, thre 73.3 3.3 0.00014 17.8 5.5 24 370-393 48-71 (110) 9 1m1j_C Fibrinogen gamma chain; 72.5 3.4 0.00014 17.7 9.7 30 406-435 108-137 (409) 10 2qf4_A Cell shape determining 62.4 5.3 0.00022 16.3 3.7 39 47-90 30-68 (172) 11 1xme_C Cytochrome C oxidase po 52.0 7.8 0.00033 15.1 2.9 27 1-31 1-27 (34) 12 2dpy_A FLII, flagellum-specifi 52.0 7.8 0.00033 15.1 2.8 24 40-64 59-82 (438) 13 3bz1_T PSII-T, PSII-TC, photos 41.8 11 0.00047 14.1 3.4 26 11-36 6-31 (32) 14 2c61_A A-type ATP synthase non 37.3 13 0.00054 13.6 1.8 20 433-452 446-465 (469) 15 1z1n_X Sixteen heme cytochrome 31.9 5.9 0.00025 16.0 -0.7 26 2-27 3-28 (560) 16 2eqn_A Hypothetical protein LO 30.9 14 0.00061 13.3 1.2 47 52-108 19-65 (103) 17 2v3m_A NAF1; ribosomal protein 27.9 18 0.00077 12.6 1.7 49 52-109 24-73 (131) 18 2dnx_A Syntaxin-12; snare, HAB 26.9 19 0.0008 12.4 11.6 18 409-426 94-111 (130) 19 1v5v_A Aminomethyltransferase; 25.1 20 0.00085 12.2 9.4 15 62-76 79-94 (401) 20 2knc_A Integrin alpha-IIB; tra 22.9 22 0.00094 11.9 2.1 22 14-35 19-40 (54) 21 2cp0_A Clipr-59 protein, clipr 22.1 23 0.00097 11.8 4.4 62 48-118 13-74 (95) 22 1cz4_A VCP-like ATPase; double 21.7 24 0.00099 11.8 2.3 26 49-75 33-58 (185) 23 2cp3_A CLIP-115, KIAA0291; mic 21.0 24 0.001 11.7 5.5 62 48-118 4-65 (84) No 1 >2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B Probab=97.81 E-value=0.002 Score=40.35 Aligned_cols=23 Identities=0% Similarity=0.211 Sum_probs=7.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999998 Q gi|254780140|r 408 IQNLVRKLQETVNHFDDCLNNFE 430 (452) Q Consensus 408 ~~~~~~~~~~~~~~l~~~~~~l~ 430 (452) +...+.++...+..+...+..+. T Consensus 273 ~~~~~~~l~~~~~~l~~~~~~l~ 295 (309) T 2ch7_A 273 VNARLQEISASTEEVTSRVQTIR 295 (309) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999 No 2 >1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1 Probab=97.10 E-value=0.014 Score=34.30 Aligned_cols=166 Identities=7% Similarity=0.132 Sum_probs=77.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 44444431012577898889889999987755323332223333210145677777765543322211122344431006 Q gi|254780140|r 256 SSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAFLENIADSTSNMRSSISAIREITDQRQKIISTINTI 335 (452) Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 335 (452) ....+......+...+..+.++.++.+-+ .+++.+.+.+.+.....+....+.++................ +. T Consensus 57 ~~~~l~~~~~~I~~i~~~I~~Ia~QTNLL--ALNAsIEAARAGe~GrGFaVVA~EIrkLA~~t~~a~~~I~~~---i~-- 129 (227) T 1qu7_A 57 TMRDISTSSQKIADIISVIDGIAFQTNIL--ALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSL---IE-- 129 (227) T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHH--HHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-- T ss_conf 99999999999999999999999886688--754888861155405327899999999999999999999999---99-- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88886579899999999999987640-12236799999999999999999999999999999998646428999999999 Q gi|254780140|r 336 ENITSNLNDSSQKFAELMSKINNISA-LKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRK 414 (452) Q Consensus 336 ~~~~~~l~~~~~~v~~~~~~id~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 414 (452) ++...+......+......+..+.. ..+......++....+......+.+...+..+........ ....++.....+ T Consensus 130 -~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~I~~~~~~~~~~~~~i~~~i~~i~~~~~~~~-~~~~e~~~~~~~ 207 (227) T 1qu7_A 130 -DSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNA-ALVEQSAAAAAA 207 (227) T ss_dssp -HHHHHHHHHHHHHHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH T ss_conf -999999999999999999999999999999999999999999999999999999999999999999-999988765899 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999998 Q gi|254780140|r 415 LQETVNHFDDCLNNFE 430 (452) Q Consensus 415 ~~~~~~~l~~~~~~l~ 430 (452) +.+....|...+..|+ T Consensus 208 l~~~a~~L~~~v~~Fk 223 (227) T 1qu7_A 208 LEEQASRLTEAVAVFR 223 (227) T ss_dssp HHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCC T ss_conf 9999999999996701 No 3 >2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B Probab=96.53 E-value=0.038 Score=31.31 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=10.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHH Q ss_conf 99999999999999999999999878888 Q gi|254780140|r 407 DIQNLVRKLQETVNHFDDCLNNFERNPQD 435 (452) Q Consensus 407 ~~~~~~~~~~~~~~~l~~~~~~l~~~p~~ 435 (452) ++...+.++...+..+...+..+....+. T Consensus 265 ~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ 293 (309) T 2ch7_A 265 EITNSVKEVNARLQEISASTEEVTSRVQT 293 (309) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999 No 4 >1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1 Probab=96.08 E-value=0.066 Score=29.66 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=9.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999878 Q gi|254780140|r 408 IQNLVRKLQETVNHFDDCLNNFERN 432 (452) Q Consensus 408 ~~~~~~~~~~~~~~l~~~~~~l~~~ 432 (452) +....+++......|......|... T Consensus 194 ~~~~~~e~~~~~~~l~~~a~~L~~~ 218 (227) T 1qu7_A 194 NAALVEQSAAAAAALEEQASRLTEA 218 (227) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999998876589999999999999 No 5 >2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2 Probab=84.64 E-value=1.5 Score=20.18 Aligned_cols=25 Identities=4% Similarity=0.139 Sum_probs=9.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999 Q gi|254780140|r 374 RAMHTFRDTSEKINRYIPSIGNNLQ 398 (452) Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~l~ 398 (452) .+++.+...-..+...+..+-..+. T Consensus 271 ~aL~~i~~~W~~l~~~~~~ll~~v~ 295 (346) T 2nrj_A 271 NALTYMSTQWHDLDSQYSGVLGHIE 295 (346) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999989999999998 No 6 >2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes} Probab=80.18 E-value=2.2 Score=19.06 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.8 Q ss_pred CCCCCCCCCCEEEEEEEEEEEEEEEEE Q ss_conf 875676689807890074337988886 Q gi|254780140|r 47 GSVDGLSTDSSVRFNGIPVGRIVGLFL 73 (452) Q Consensus 47 ~~v~GL~~gspV~~~Gv~VG~V~~I~l 73 (452) ++-.|+++|.||...+--||+|.++.. T Consensus 92 G~~dGI~~g~~Vi~~~GlVG~V~~v~~ 118 (255) T 2j5u_A 92 GSSDGVKPDMAVTTPSGLIGKVTTTGA 118 (255) T ss_dssp CGGGTCCTTCEEEETTEEEEEEEEECS T ss_pred CCCCCCCCCCEEEECCCCEEEEEEECC T ss_conf 830377789658842663579999646 No 7 >3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Probab=73.91 E-value=3.2 Score=17.88 Aligned_cols=27 Identities=7% Similarity=0.223 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999878 Q gi|254780140|r 406 NDIQNLVRKLQETVNHFDDCLNNFERN 432 (452) Q Consensus 406 ~~~~~~~~~~~~~~~~l~~~~~~l~~~ 432 (452) .+++..+...+..+..+...+..++.. T Consensus 108 ~qLq~~l~~l~~~i~~lk~~I~qLeek 134 (411) T 3ghg_C 108 RYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 777778899998989999999999976 No 8 >1lvf_A Syntaxin 6; snare, three-helix bundle, transport protein; 2.10A {Rattus norvegicus} SCOP: a.47.2.1 Probab=73.28 E-value=3.3 Score=17.78 Aligned_cols=24 Identities=8% Similarity=0.226 Sum_probs=9.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999 Q gi|254780140|r 370 KDAQRAMHTFRDTSEKINRYIPSI 393 (452) Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~ 393 (452) .++...+.++...++.+...+.-+ T Consensus 48 ~eL~~~l~~ie~dL~dLe~av~~v 71 (110) T 1lvf_A 48 NELRNNLRSIEWDLEDLDETISIV 71 (110) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999997999999999999 No 9 >1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Probab=72.46 E-value=3.4 Score=17.65 Aligned_cols=30 Identities=7% Similarity=0.216 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHH Q ss_conf 999999999999999999999999878888 Q gi|254780140|r 406 NDIQNLVRKLQETVNHFDDCLNNFERNPQD 435 (452) Q Consensus 406 ~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~ 435 (452) .+++..+......+..+...+..++...+. T Consensus 108 ~eLq~~l~~~~~~I~~LkqkI~qLeqq~qe 137 (409) T 1m1j_C 108 QQLTDMHIMNSNKITQLKQKIAQLESHCQE 137 (409) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999987776556799999999987501 No 10 >2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae R6} PDB: 2qf5_A Probab=62.38 E-value=5.3 Score=16.29 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=28.9 Q ss_pred CCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCC Q ss_conf 87567668980789007433798888648886079999997489 Q gi|254780140|r 47 GSVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPD 90 (452) Q Consensus 47 ~~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~ 90 (452) ++..|+++|+||...+--||+|.++... ...|.+-.+.+ T Consensus 30 G~~~GI~~g~~Vi~~~GlVG~V~~v~~~-----~S~V~litd~~ 68 (172) T 2qf4_A 30 GRSKGASENMLAIANGGLIGSVSKVEEN-----STIVNLLTNTE 68 (172) T ss_dssp CGGGTCCTTCEEEETTEEEEEEEEECSS-----CEEEEETTCSB T ss_pred CHHHCCCCCCEEEECCCCEEEEEEECCC-----EEEEEEEECCC T ss_conf 6041898899999899648999994772-----68999974565 No 11 >1xme_C Cytochrome C oxidase polypeptide IIA; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: f.23.9.1 PDB: 2qpd_C* 2qpe_C* 3bvd_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* Probab=52.00 E-value=7.8 Score=15.13 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=16.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9632789999999999999999999986254 Q gi|254780140|r 1 MESKNYYTSVGLFVVSILFFSFFSIYWLSRS 31 (452) Q Consensus 1 m~~~~~~~~vG~fvi~~~~~~~~~~~~~~~~ 31 (452) ||+|- +|..-+..+..+..+++||+.. T Consensus 1 meekp----~gal~vi~il~l~ilvfw~gv~ 27 (34) T 1xme_C 1 MEEKP----KGALAVILVLTLTILVFWLGVY 27 (34) T ss_dssp -CCCC----HHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCC----CCHHHHHHHHHHHHHHHHHHHH T ss_conf 99786----4157999999999999999999 No 12 >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} Probab=51.98 E-value=7.8 Score=15.13 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=15.2 Q ss_pred EEEEEECCCCCCCCCCCEEEEEEEE Q ss_conf 9999971875676689807890074 Q gi|254780140|r 40 EVIIRIPGSVDGLSTDSSVRFNGIP 64 (452) Q Consensus 40 ~~~~~f~~~v~GL~~gspV~~~Gv~ 64 (452) .+...| ++..||.+|++|+..|-. T Consensus 59 ~~l~~~-~~t~Gi~~G~~V~~tg~~ 82 (438) T 2dpy_A 59 LFLMPL-EEVEGILPGARVYARNGH 82 (438) T ss_dssp EEEEES-SCCTTCCTTEEEEEC--- T ss_pred EEEEEC-CCCCCCCCCCEEEECCCC T ss_conf 999988-888788999999967985 No 13 >3bz1_T PSII-T, PSII-TC, photosystem II reaction center protein T; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_T* 2axt_T* 3bz2_T* 3kzi_T* 3a0b_T* 3a0h_T* Probab=41.78 E-value=11 Score=14.07 Aligned_cols=26 Identities=12% Similarity=0.285 Sum_probs=19.3 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 99999999999999998625444677 Q gi|254780140|r 11 GLFVVSILFFSFFSIYWLSRSNQYDG 36 (452) Q Consensus 11 G~fvi~~~~~~~~~~~~~~~~~~~~~ 36 (452) =+|+++.++.++++.++|....+..+ T Consensus 6 yv~i~acii~lfffaiffre~p~i~k 31 (32) T 3bz1_T 6 YVFIFACIIALFFFAIFFREPPRITK 31 (32) T ss_dssp HHHHHHHHHHHHHHHHHSSCCCCCSC T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 58999999999999998437987677 No 14 >2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A* Probab=37.26 E-value=13 Score=13.60 Aligned_cols=20 Identities=20% Similarity=0.477 Sum_probs=10.2 Q ss_pred HHHHHCCCCCCCCCCCCCCC Q ss_conf 88861188877745426898 Q gi|254780140|r 433 PQDIVWGREKGSVKIYKPKH 452 (452) Q Consensus 433 p~~li~g~~~~~~~~~~~~~ 452 (452) |..-+..=++.-+.+|.|+| T Consensus 446 ~~~~~~~~~~~~i~~~~~~~ 465 (469) T 2c61_A 446 PENQLGRIDNKYIQKYHPAH 465 (469) T ss_dssp CGGGCTTSCHHHHHHHSTTC T ss_pred CHHHHHHHHHHHHHHHHHHH T ss_conf 89988788899999985653 No 15 >1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC; 2.10A {Desulfovibrio gigas} Probab=31.87 E-value=5.9 Score=16.01 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=16.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 63278999999999999999999998 Q gi|254780140|r 2 ESKNYYTSVGLFVVSILFFSFFSIYW 27 (452) Q Consensus 2 ~~~~~~~~vG~fvi~~~~~~~~~~~~ 27 (452) +.|--..|+|||+++++++++++-.+ T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (560) T 1z1n_X 3 QRKRAARWVGIPCAILFLTVPFISAT 28 (560) T ss_dssp -------------------------- T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 50478999999999999999988874 No 16 >2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens} Probab=30.91 E-value=14 Score=13.26 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=21.9 Q ss_pred CCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCH Q ss_conf 668980789007433798888648886079999997489724688469997423210 Q gi|254780140|r 52 LSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAG 108 (452) Q Consensus 52 L~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i~~~~~~~i~~~~l~g 108 (452) +....++. ++|+|.+|- + ..+.+.- .....++..++......+-.+| T Consensus 19 v~~~~~i~----~iG~v~~iv---~--~~vvIks-~~~~~~L~~~Svl~~~~~~~iG 65 (103) T 2eqn_A 19 LPEDIELK----PLGMVSSII---E--QLVIIES-MTNLPPVNEETVIFKSDRQAAG 65 (103) T ss_dssp CCTTSCCE----EEEEEEEEC---S--SSEEEEE-CSSCCCCCTTCEEECTTSBEEE T ss_pred CCCCCEEE----EEEEEEEEE---C--CEEEEEE-CCCCCCCCCCCEEEECCCCEEE T ss_conf 69998788----728998981---8--8699997-8998675378999958996878 No 17 >2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae} Probab=27.85 E-value=18 Score=12.56 Aligned_cols=49 Identities=20% Similarity=0.398 Sum_probs=30.0 Q ss_pred CCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCC-CCCCCCCEEEEEECCCCHH Q ss_conf 668980789007433798888648886079999997489-7246884699974232102 Q gi|254780140|r 52 LSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPD-TPLYPSTTATIRTQGLAGI 109 (452) Q Consensus 52 L~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~-~~i~~~~~~~i~~~~l~g~ 109 (452) |....++. ++|+|.+|- + ..++|....... .++-.+|...+..+-.+|- T Consensus 24 i~~~~~i~----~iG~I~siv---d--~~ViI~s~~s~~~~vLd~~SvLcledr~~iG~ 73 (131) T 2v3m_A 24 ISEKTIIT----PIGVLKSAF---E--NNIIIHATMSGEKRVLKEGSIFCLEDRTLIGM 73 (131) T ss_dssp CCTTSCEE----EEEEEEEEE---T--TEEEEEEC-----CCCCTTCEEEETTCCEEEE T ss_pred CCCCCEEE----ECCEEEEEE---C--CEEEEEEECCCCCEEECCCCEEEECCCCEEEE T ss_conf 39998666----741398980---7--86999983688840143777899708948899 No 18 >2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=26.86 E-value=19 Score=12.44 Aligned_cols=18 Identities=17% Similarity=0.445 Sum_probs=6.9 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999 Q gi|254780140|r 409 QNLVRKLQETVNHFDDCL 426 (452) Q Consensus 409 ~~~~~~~~~~~~~l~~~~ 426 (452) +.+..++.+.+.....+- T Consensus 94 ~kL~~~F~~~l~~fq~~Q 111 (130) T 2dnx_A 94 ERLMNDFSAALNNFQAVQ 111 (130) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999 No 19 >1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Probab=25.15 E-value=20 Score=12.23 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=5.7 Q ss_pred EEEEEEEE-EEEECCC Q ss_conf 07433798-8886488 Q gi|254780140|r 62 GIPVGRIV-GLFLDQE 76 (452) Q Consensus 62 Gv~VG~V~-~I~l~~~ 76 (452) ++++|+.. .+-++++ T Consensus 79 ~l~~g~~~yt~~ln~~ 94 (401) T 1v5v_A 79 KPPAISGTYTLVLNER 94 (401) T ss_dssp SSCSSEEEEEEEECTT T ss_pred CCCCCCEEEEEEECCC T ss_conf 6889848999898799 No 20 >2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} Probab=22.92 E-value=22 Score=11.95 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=8.7 Q ss_pred HHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9999999999999862544467 Q gi|254780140|r 14 VVSILFFSFFSIYWLSRSNQYD 35 (452) Q Consensus 14 vi~~~~~~~~~~~~~~~~~~~~ 35 (452) +++|++++...++.+...+++. T Consensus 19 v~~GlLlL~ll~~~LwK~GFFK 40 (54) T 2knc_A 19 VLGGLLLLTILVLAMWKVGFFK 40 (54) T ss_dssp HHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999999999999999827312 No 21 >2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Probab=22.07 E-value=23 Score=11.83 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=38.3 Q ss_pred CCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHCCCCC Q ss_conf 75676689807890074337988886488860799999974897246884699974232102332101465 Q gi|254780140|r 48 SVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLR 118 (452) Q Consensus 48 ~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i~~~~~~~i~~~~l~g~~~i~~~~~~ 118 (452) +..+|.+|+.|++.|-..|.|.-|-.-+..++. .+=+++| .|..+. ...+-|.+|....++. T Consensus 13 ~~~~~~vG~rV~v~~~~~G~VryiG~~~~~~g~-~vGVelD--~p~Gk~------dG~~~G~rYF~c~~~~ 74 (95) T 2cp0_A 13 SALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQ-WVGVELD--EPEGKN------DGSVGGVRYFICPPKQ 74 (95) T ss_dssp HHHTCCTTCEEEETTTEEEEEEEEECCSSSCSC-EEEEEES--SSCCSB------CSEETTEECCCCSSSC T ss_pred CCCCCCCCCEEEECCCCEEEEEEEEECCCCCCE-EEEEEEC--CCCCCC------CCEECCEEEEECCCCC T ss_conf 015881399999899727999995426898975-9999979--889887------9899999988469991 No 22 >1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A Probab=21.69 E-value=24 Score=11.78 Aligned_cols=26 Identities=4% Similarity=0.073 Sum_probs=19.2 Q ss_pred CCCCCCCCEEEEEEEEEEEEEEEEECC Q ss_conf 567668980789007433798888648 Q gi|254780140|r 49 VDGLSTDSSVRFNGIPVGRIVGLFLDQ 75 (452) Q Consensus 49 v~GL~~gspV~~~Gv~VG~V~~I~l~~ 75 (452) .-||..|++|+++|=+. .|-.+...+ T Consensus 33 ~Lgl~~GD~V~I~G~r~-T~a~v~~~~ 58 (185) T 1cz4_A 33 LLDAEIGDVVEIEKVRK-TVGRVYRAR 58 (185) T ss_dssp TTCCCTTCEEEEESSSE-EEEEEEECS T ss_pred HCCCCCCCEEEEECCCC-EEEEEEECC T ss_conf 86999999899975882-589999657 No 23 >2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Probab=21.03 E-value=24 Score=11.69 Aligned_cols=62 Identities=16% Similarity=0.144 Sum_probs=38.9 Q ss_pred CCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHCCCCC Q ss_conf 75676689807890074337988886488860799999974897246884699974232102332101465 Q gi|254780140|r 48 SVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLR 118 (452) Q Consensus 48 ~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i~~~~~~~i~~~~l~g~~~i~~~~~~ 118 (452) ...+|.+|+.|++.+...|.|.-|-.-+...+ ..+=++.|. |+.+. ...+-|..|....|+. T Consensus 4 ~~~~~~vG~rV~v~~~~~G~VryiG~~~~~~g-~~vGVelD~--p~Gk~------dG~~~G~rYF~C~p~~ 65 (84) T 2cp3_A 4 GSSGLRLGDRVLVGGTKTGVVRYVGETDFAKG-EWCGVELDE--PLGKN------DGAVAGTRYFQCPPKF 65 (84) T ss_dssp SSCSCCTTCEEEETTTEEEEEEEEEECSSSSS-EEEEEEESS--SCCSB------SSEETTEESSCCCTTT T ss_pred CCCCCEECCEEEECCCCEEEEEEEECCCCCCC-CEEEEEECC--CCCCC------CCEECCEEEEECCCCE T ss_conf 66773338999989984799999410689897-099999688--88887------9999999988579991 Done!