RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780140|ref|YP_003064553.1| putative ABC transporter,
substrate-binding protein [Candidatus Liberibacter asiaticus str.
psy62]
         (452 letters)



>gnl|CDD|162151 TIGR00996, Mtu_fam_mce, virulence factor Mce family protein.
           Members of this paralogous family are found as six
           tandem homologous proteins in the same orientation per
           cassette, in four separate cassettes in Mycobacterium
           tuberculosis. The six members of each cassette represent
           six subfamilies. One subfamily includes the protein mce
           (mycobacterial cell entry), a virulence protein required
           for invasion of non-phagocytic cells.
          Length = 291

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 52/356 (14%), Positives = 106/356 (29%), Gaps = 83/356 (23%)

Query: 8   TSVGLFVVSILFFSFFSI-YWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRFNGIPVG 66
            +V L  V +L   F  + +       Y    A           GL   S VR  G+PVG
Sbjct: 6   AAVVLAAVVVLGVVFLRLPFRGFGPGTY-TVYAY-----FTDAGGLYPGSKVRVRGVPVG 59

Query: 67  RIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLRKEKKTIFQ 126
           ++  + L     N +     +     +  + TA IR+  L G  Y+EL+  +        
Sbjct: 60  KVTAISLP---GNGARVTFSLDRGVTIPANATAAIRSTTLLGSRYVELTPPKGPGGPPLP 116

Query: 127 ----IATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIAN 182
               I   R      T+ P  I+  + +       +                        
Sbjct: 117 PGGVIPLAR------TSVPPEIDDLLGSLTRLLNGLD--------------------PEK 150

Query: 183 IETISTVLANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAID--LQKVN 240
           +  I   LA                P           + +L+  L ++  A++     + 
Sbjct: 151 LNAILNALAEA---------LAGQGPQ----------LRNLLDGLAQLTAALNARDGDIG 191

Query: 241 QILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAF 300
            +++N+    +     SDQ+   + ++   T    +    +D  L+           S  
Sbjct: 192 ALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLADRDDALDDALAA---------LSGA 242

Query: 301 LENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKI 356
              + D              + + R  +   +  +  + + L D   +  +L+  +
Sbjct: 243 SAQVRDL-------------LAENRPNLPQALANLAPVLTLLVDYHPELEQLLHLL 285


>gnl|CDD|128579 smart00283, MA, Methyl-accepting chemotaxis-like domains
           (chemotaxis sensory transducer).  Thought to undergo
           reversible methylation in response to attractants or
           repellants during bacterial chemotaxis.
          Length = 262

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 17/124 (13%)

Query: 237 QKVNQILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKE 296
             + +I E    +     +SS +V   V  V ET +  +E+   ++             E
Sbjct: 151 SLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVE-------------E 197

Query: 297 TSAFLENIADSTSNMRSSIS----AIREITDQRQKIISTINTIENITSNLNDSSQKFAEL 352
            +  ++ IA +T    +       AI EI    Q+  +    I      L+  +++  EL
Sbjct: 198 IADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEISAAAEELSGLAEELKEL 257

Query: 353 MSKI 356
           + + 
Sbjct: 258 VEQF 261



 Score = 31.9 bits (73), Expect = 0.32
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 266 DVRETTQTFQEVGQKIDHLLSDFSSKMKS-----KETSAFLENIADSTSNMRSSISAIRE 320
           DV E  +      ++    L + + +M+      +E +A  + IA +  +   +    RE
Sbjct: 1   DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGRE 60

Query: 321 ITDQRQKIISTIN-TIENITSN---LNDSSQKFAELMSKINNIS 360
             +     +  I   +E   S    L +SS +  E++S I++I+
Sbjct: 61  AVEDAITAMDQIREVVEEAVSAVEELEESSDEIGEIVSVIDDIA 104



 Score = 29.9 bits (68), Expect = 1.3
 Identities = 26/225 (11%), Positives = 62/225 (27%), Gaps = 88/225 (39%)

Query: 148 ISNAENTSKKISDSSRHIQKIIENIEKPLTTTI----------ANIE------------- 184
           +  A +  +++ +SS  I +I+  I       I          A IE             
Sbjct: 76  VEEAVSAVEELEESSDEIGEIVSVI-----DDIADQTNLLALNAAIEAARAGEAGRGFAV 130

Query: 185 ---------------------TISTVLANNISHIDKMMHTTQ----VTPHSSDSKNTFNT 219
                                 I  +       +  M  ++           ++      
Sbjct: 131 VADEVRKLAERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGEALEE 190

Query: 220 ITDLITSLDKMIKAIDLQKVNQILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQ 279
           I D +              +  +++ I  +++     S++V   + ++ + TQ       
Sbjct: 191 IVDSVEE------------IADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQ------- 231

Query: 280 KIDHLLSDFSSKMKSKETSAFLENIADSTSNMRSSISAIREITDQ 324
                           ET+A  E I+ +   +      ++E+ +Q
Sbjct: 232 ----------------ETAAMSEEISAAAEELSGLAEELKELVEQ 260


>gnl|CDD|185619 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
            Provisional.
          Length = 2722

 Score = 34.4 bits (79), Expect = 0.057
 Identities = 32/195 (16%), Positives = 80/195 (41%), Gaps = 2/195 (1%)

Query: 239  VNQILENIQVSSNNFVKSSDQVI--NTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKE 296
            + +  E I      F K    +   NT+ +          +G+ ++ +   FSS +  KE
Sbjct: 2362 IIKTKEKINNLKEEFSKLLKNIKRNNTLCNNNNIKDFISNIGKSVETIKQRFSSNLPEKE 2421

Query: 297  TSAFLENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKI 356
                +E   +   N+ +    I  +     KI+  I+  +N  +N  ++ +    + +  
Sbjct: 2422 KLHQIEENLNEIKNIMNETKRISNVDAFTNKILQDIDNEKNKENNNMNAEKIDDLIENVT 2481

Query: 357  NNISALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQ 416
            ++   +K    +  DA R +   +D   K+   +    NN  N +++ +++   ++ +L+
Sbjct: 2482 SHNEKIKSELLIINDALRRVKEKKDEMNKLFNSLTENNNNNNNSAKNIVDNSTYIINELE 2541

Query: 417  ETVNHFDDCLNNFER 431
              V+  ++ L+  + 
Sbjct: 2542 SHVSKLNELLSYIDN 2556



 Score = 31.0 bits (70), Expect = 0.68
 Identities = 20/141 (14%), Positives = 55/141 (39%), Gaps = 10/141 (7%)

Query: 306 DSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNISA-LKE 364
           DS  +     S+     ++  +++  IN+I+   + +N++ +   +    I  +   ++ 
Sbjct: 481 DSMDSKEKKESSDSNYQEKVDELLQIINSIKEKNNIVNNNFKNIEDYYITIEGLKNEIEG 540

Query: 365 NNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQ---------SGLNDIQNLVRKL 415
              L K   +++ T     +        I N ++   +         S  ++I N+++++
Sbjct: 541 LIELIKYYLQSIETLIKDEKLKRSMKNDIKNKIKYIEENVDHIKDIISLNDEIDNIIQQI 600

Query: 416 QETVNHFDDCLNNFERNPQDI 436
           +E +N        F     D+
Sbjct: 601 EELINEALFNKEKFINEKNDL 621



 Score = 30.2 bits (68), Expect = 1.1
 Identities = 39/255 (15%), Positives = 92/255 (36%), Gaps = 33/255 (12%)

Query: 199 KMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVNQILENIQVSSNNFVKSSD 258
           + +  T    +        + I ++I +L K ++ +   K N I + +     +   S +
Sbjct: 665 QTLLNTSKNEYEKLEFMKSDNIDNIIKNLKKELQNLLSLKENIIKKQLNNIEQDISNSLN 724

Query: 259 QVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMK-------------------SKETSA 299
           Q     +D++ + + ++E  +K++       ++                      +E   
Sbjct: 725 QYTIKYNDLKSSIEEYKEEEEKLEVYKHQIINRKNEFILHLYENDKDLPDGKNTYEEFLQ 784

Query: 300 FLENIADSTSNMRSSISAIREITDQRQKIISTINTI--------ENITSNLNDSSQKFAE 351
           + + I +  + + + I+ ++E     Q ++++ N +        E     L    QKF  
Sbjct: 785 YKDTILNKENKISNDINILKENKKNNQDLLNSYNILIQKLEAHTEKNDEELKQLLQKFPT 844

Query: 352 LMSKINNISALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIG--NNLQNFSQSGLNDIQ 409
               +N    LKE    F +  + +       E +N+ I  I   N   N S S    ++
Sbjct: 845 EDENLN----LKELEKEFNENNQIVDNIIKDIENMNKNINIIKTLNIAINRSNSNKQLVE 900

Query: 410 NLVRKLQETVNHFDD 424
           +L+    +  N  + 
Sbjct: 901 HLLNNKIDLKNKLEQ 915



 Score = 29.8 bits (67), Expect = 1.6
 Identities = 49/258 (18%), Positives = 96/258 (37%), Gaps = 36/258 (13%)

Query: 211 SDSKNTFNTITDLITSLDKMIKAID------------LQKVNQILENIQVSSNNFVKSSD 258
           S  K+ ++ I     S+D   K               LQ +N I E   + +NNF    D
Sbjct: 467 SIMKSFYDLIISEKDSMDSKEKKESSDSNYQEKVDELLQIINSIKEKNNIVNNNFKNIED 526

Query: 259 QVI------NTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSK-ETSAFLENIADSTSNM 311
             I      N +  + E  + +    Q I+ L+ D   K   K +    ++ I ++  ++
Sbjct: 527 YYITIEGLKNEIEGLIELIKYYL---QSIETLIKDEKLKRSMKNDIKNKIKYIEENVDHI 583

Query: 312 RSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINN------ISALKEN 365
           +  IS   EI +  Q+I   IN          +      E +  I N      +  L + 
Sbjct: 584 KDIISLNDEIDNIIQQIEELINEALFNKEKFINEKNDLQEKVKYILNKFYKGDLQELLDE 643

Query: 366 NSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVNHF--- 422
            S F D  + ++    + E +   + +  N  +       ++I N+++ L++ + +    
Sbjct: 644 LSHFLDDHKYLYHEAKSKEDLQTLLNTSKNEYEKLEFMKSDNIDNIIKNLKKELQNLLSL 703

Query: 423 -----DDCLNNFERNPQD 435
                   LNN E++  +
Sbjct: 704 KENIIKKQLNNIEQDISN 721



 Score = 27.9 bits (62), Expect = 5.6
 Identities = 45/270 (16%), Positives = 100/270 (37%), Gaps = 33/270 (12%)

Query: 152  ENTSKKISDSSRHIQKIIENIE-KPLTTTIANIETISTVLANNISHIDKMMHTTQVTPHS 210
            +    KI  +  H  KI  ++E K +   I  IE I   ++N    I+K +   +     
Sbjct: 1329 KQVEAKIEQAKEHKNKIYGSLEDKQIDDEIKKIEQIKEEISNKRKEINKYLSNIKSNKEK 1388

Query: 211  SDSKNTFNTITDLITSLDKMIKAIDLQKVNQILENIQVSSNNFVKSSDQVINTVHDVRET 270
             D           + +  +    ID    ++ +E       N +K +D +        E 
Sbjct: 1389 CDLH---------VRNASRGKDKIDFLNKHEAIEPSNSKEVNIIKITDNINKCKQYSNEA 1439

Query: 271  TQTFQEVGQKIDHLLSDFSSKMKSKETSAFLENIADSTSNM--RSSISAIREITDQRQKI 328
             +T  +  +  D ++                       +N+   SSI   +   ++++K 
Sbjct: 1440 METENKADENNDSII-----------------KYEKEITNILNNSSILGKKTKLEKKKKE 1482

Query: 329  ISTINT-IENITSNLNDSSQKFAELMSKINNISALKENNSLFKDAQ--RAMHTFRDTSEK 385
             + I   I    S +     K +E ++++N    +K    +  + +   A  T +    +
Sbjct: 1483 ATNIMDDINGEHSIIKTKLTKSSEKLNQLNEQPNIKREGDVLNNDKSTIAYETIQYNLGR 1542

Query: 386  INRYIPSIGNNLQNFSQSGLNDIQNLVRKL 415
            +   + +I  N+++  ++ LN  Q+L+R +
Sbjct: 1543 VKHNLLNI-LNIKDEIETILNKAQDLMRDI 1571


>gnl|CDD|183759 PRK12804, PRK12804, flagellin; Provisional.
          Length = 301

 Score = 33.8 bits (77), Expect = 0.10
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 316 SAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNISALKE-----NNSLFK 370
            AI++++DQR K+ +  N +E+  +NL  S +      S+I ++   KE      N++  
Sbjct: 220 GAIKQVSDQRSKLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILS 279

Query: 371 DAQRAM 376
            A +AM
Sbjct: 280 QASQAM 285


>gnl|CDD|148180 pfam06419, COG6, Conserved oligomeric complex COG6.  COG6 is a
           component of the conserved oligomeric golgi complex,
           which is composed of eight different subunits and is
           required for normal golgi morphology and localisation.
          Length = 615

 Score = 33.4 bits (77), Expect = 0.13
 Identities = 36/200 (18%), Positives = 78/200 (39%), Gaps = 29/200 (14%)

Query: 235 DLQKVNQILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSS-KMK 293
           +   V + L+ I    +    + +++ + +++ ++ T+   ++ ++   L+      ++K
Sbjct: 39  EFGPVAEQLKRIGEDLSKLNNTCEEMKSQLNNAKQDTK---DLLEEASTLMEQKRQIELK 95

Query: 294 SKETSAFLENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNL--NDSSQKFAE 351
            K   AFL     S   +    S    I D+  +++  +  I      L   ++ +   E
Sbjct: 96  KKLLKAFLSRFTLSEDELDVLTSGEEPIDDEFFQVLDKVKKIHEDCEILLGGENQRAGLE 155

Query: 352 LMSKINNI--SALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQ 409
           +M K+N    +A   N  L++  QR    FR               NL++        ++
Sbjct: 156 IMEKMNRNLEAA---NEKLYRWTQR---EFR-------------NLNLESPQILST--LR 194

Query: 410 NLVRKLQETVNHFDDCLNNF 429
             +R L E    F  CL+ F
Sbjct: 195 KALRVLAERPVLFQSCLDEF 214


>gnl|CDD|150562 pfam09903, DUF2130, Uncharacterized protein conserved in bacteria
           (DUF2130).  This domain, found in various hypothetical
           prokaryotic proteins, has no known function.
          Length = 267

 Score = 33.4 bits (77), Expect = 0.13
 Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 274 FQEVGQKIDHLLSDFSSKMKSKETSAFLENIADSTSNMRSSISAIREITDQRQKIISTIN 333
            QE  +  +  + +F  + +  +  A ++N   +  ++   I AI +   + +K I  + 
Sbjct: 178 EQENVKDKNIDIYNFEKEFRQFKE-AIVKNFELAQKDLDKEIKAIDKAWKKLEKQIEAV- 235

Query: 334 TIENITSNLNDSSQKFAEL-MSKIN 357
            + + T+NL  ++ K A L + K+ 
Sbjct: 236 -LGS-TNNLRGANNKIAGLTIKKLT 258


>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
          Length = 895

 Score = 33.3 bits (76), Expect = 0.14
 Identities = 52/321 (16%), Positives = 114/321 (35%), Gaps = 48/321 (14%)

Query: 132 NQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETISTVLA 191
           NQ   +       N ++ + E+  KKI + S++I+++   I + L     + + I   L 
Sbjct: 353 NQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELN 412

Query: 192 NNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVNQILENIQV--- 248
                +  +         SS   +    I  L  +LD      +L +  ++L    V   
Sbjct: 413 EINVKLQDI---------SSKVSSLNQRIRALRENLD------ELSRNMEMLNGQSVCPV 457

Query: 249 --------SSNNFVKSSDQVINTVH-DVRETTQTFQEVGQKIDHLLS--DFSSKMKSKET 297
                    SN+ +   ++  + +   +RE     +++ +KI  L    ++    +  ++
Sbjct: 458 CGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKS 517

Query: 298 SAFLENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAE---LMS 354
                 I  + +++      I E+ D+  K     N  +++   L D   K       ++
Sbjct: 518 INEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSL--KLEDLDSKRTSWLNALA 575

Query: 355 KINNI------SALKENNSLFKDAQRAMHTFRDTSEKINRYIPSI-------GNNLQNFS 401
            I+ I      S   E      D +  +            YI           NNL N  
Sbjct: 576 VISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNN-K 634

Query: 402 QSGLNDIQNLVRKLQETVNHF 422
            + + + + L+ KL+  ++++
Sbjct: 635 YNEIQENKILIEKLRGKIDNY 655



 Score = 32.2 bits (73), Expect = 0.28
 Identities = 46/285 (16%), Positives = 106/285 (37%), Gaps = 19/285 (6%)

Query: 142 SGINYFISNAENTSKKISDSSRHIQKIIENIE-KPLTTTIANIETISTVLANNISHIDKM 200
           S +   I   E   K I +    ++K  E +E + +  +I     I +  A+      K+
Sbjct: 479 SRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKI 538

Query: 201 MHTTQVTPHSSDSKNTFNTI---------TDLITSLDKMIKAIDLQKVNQILENIQVSSN 251
                      + KN + ++         T  + +L  +I  ID++        I+   N
Sbjct: 539 NELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNAL-AVISLIDIETNRSRSNEIKKQLN 597

Query: 252 NFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKS-KETSAFLENIADSTSN 310
           +      ++     D +          ++I++  ++ ++K    +E    +E +     N
Sbjct: 598 DLESRLQEIEIGFPDDKSYIDKSI---REIENEANNLNNKYNEIQENKILIEKLRGKIDN 654

Query: 311 MRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNISALKE-NNSLF 369
            +  I+ I  I    ++I S IN IE+   NL  S +   +  +    + +  E   +  
Sbjct: 655 YKKQIAEIDSIIPDLKEITSRINDIED---NLKKSRKALDDAKANRARLESTIEILRTRI 711

Query: 370 KDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRK 414
            +    ++   +T E + +   +IG+  +       + +  ++RK
Sbjct: 712 NELSDRINDINETLESMKKIKKAIGDLKRLREAFDKSGVPAMIRK 756



 Score = 28.7 bits (64), Expect = 3.5
 Identities = 50/297 (16%), Positives = 103/297 (34%), Gaps = 28/297 (9%)

Query: 136 MITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETISTVLANNIS 195
           M+ A  S I+Y     E   K  +    +I+K I + EK  + T+  IE +S    N + 
Sbjct: 177 MLRAEISNIDYL----EEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMD 232

Query: 196 HIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVNQILENIQVSSNNFVK 255
             +          +   + N  +++ D+    +  IK  +     ++ +N      N+ K
Sbjct: 233 DYN----------NLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKN------NYYK 276

Query: 256 SSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAFLENIADSTSNMRSSI 315
             ++    +            V +  +++   F  K   +     L NI    +   + I
Sbjct: 277 ELEERHMKI--------INDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAII 328

Query: 316 SAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNISALKENNSLFKDAQRA 375
             +  +       I   +  +++ + + +      +  S + +I +LK+    +      
Sbjct: 329 KKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIER 388

Query: 376 MHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVNHFDDCLNNFERN 432
           M  F     KI    P       N     L DI + V  L + +    + L+   RN
Sbjct: 389 MSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRN 445


>gnl|CDD|177394 PHA02562, 46, endonuclease subunit; Provisional.
          Length = 562

 Score = 32.3 bits (74), Expect = 0.25
 Identities = 29/177 (16%), Positives = 68/177 (38%), Gaps = 25/177 (14%)

Query: 218 NTITDLITSLDKMIKAI--DLQ-KVNQILENIQVSSNNFVKSSDQVINTVHDVRETTQTF 274
            T    I    K         Q K ++++E  +       + +D+++N V D+ + +   
Sbjct: 198 KTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAAL 257

Query: 275 QEVGQKIDHLLSDFSSKMKS--KETSAFLEN---------IADSTSNMRSSISAIREITD 323
            ++        +   SK++   K    + +          I++    +      ++E+  
Sbjct: 258 NKLNTA----AAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQH 313

Query: 324 QRQKIISTINTIENITSNLNDSSQKFAELMSKINN----ISALKENNSLFKDAQRAM 376
             +K+ + I+ +E I    N+ S+K  EL +KI+     +  L +     K  + A+
Sbjct: 314 SLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKA---KKVKAAI 367


>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein.  These
            proteins are found in P. falciparum, P. vivax and P.
            yoelii.
          Length = 2757

 Score = 31.6 bits (71), Expect = 0.41
 Identities = 59/311 (18%), Positives = 113/311 (36%), Gaps = 54/311 (17%)

Query: 152  ENTSKKISDSSRHIQKIIENIEKPLTTTIANI-ETISTVLANNISHIDKMMHTTQVTPHS 210
            E  +  I        K I NIE  + T+I NI + I   +  NI  ++      ++   +
Sbjct: 1025 EKATNDIEQKIEDANKNIPNIEIAIHTSIYNIIDEIEKEIGKNIELLN-----KEILEEA 1079

Query: 211  SDSKNTFNTI--------------------TDLITSLDKMIKAIDLQKVNQI--LENIQV 248
              +   FN I                     D I  +   IK +D +  + I  LE I+ 
Sbjct: 1080 EINITNFNEIKEKLKHYNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKK 1139

Query: 249  SSNNFVKSSDQVINTVHDVRETT----------QTFQEVGQKID----------HLLSDF 288
             S N++      IN + DV +            +  + +  KID           LL++ 
Sbjct: 1140 KSENYIDEIKAQINDLEDVADKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEI 1199

Query: 289  SSKMKSKETSAFLENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQK 348
            +   K K +   ++ I  S       +  + +I ++++K    I  +E    +L++  +K
Sbjct: 1200 AEIEKDKTSLEEVKGINLSYGKNLGKL-FLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEK 1258

Query: 349  FAELMSKINNISALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNL-----QNFSQS 403
              E+ +++     +K     F  +          S+K +  I  I             +S
Sbjct: 1259 SPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEES 1318

Query: 404  GLNDIQNLVRK 414
             +NDI+  ++K
Sbjct: 1319 DINDIKKELQK 1329



 Score = 30.4 bits (68), Expect = 0.96
 Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 10/166 (6%)

Query: 201 MHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVNQILENI-----QVSS--NNF 253
           M T  V  H S+ +N  N + D+I  + K I     + +N+ILE+      ++S+  N++
Sbjct: 715 METATVELHLSNIENKKNELLDIIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKINDY 774

Query: 254 VKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAFLENIADSTSNMRS 313
            K  D++      + E    + +    ID+ + D  +K    ++  +++ I+     +  
Sbjct: 775 AKEKDELNKYKSKISEIKNHYND-QINIDN-IKDEDAKQNYDKSKEYIKTISIKEDEIFK 832

Query: 314 SISAIREITDQ-RQKIISTINTIENITSNLNDSSQKFAELMSKINN 358
            I+ ++ + D    K+   IN   N    ++   ++FAEL +KI  
Sbjct: 833 IINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKIKA 878



 Score = 29.6 bits (66), Expect = 1.6
 Identities = 48/237 (20%), Positives = 102/237 (43%), Gaps = 35/237 (14%)

Query: 158  ISDSSRHIQKIIENIEKPLTTTIANIETISTVLANNISHIDKMMHTTQVTPHSSDSKNTF 217
            ++D+++    +IE  EK  T  I N+  + T+  NN        +  Q+   +S+   + 
Sbjct: 2217 LADATKDHNNLIEK-EKEATKIINNLTELFTIDFNNADADILHNNKIQIIYFNSELHKSI 2275

Query: 218  NTITDLITSLDKMIKAIDLQKVNQILENIQVSSNNFVK-SSDQVINTVHDVRETTQTFQE 276
             +I  L   +    K +++  +N+   +I    +N ++    ++   ++D++E  Q   +
Sbjct: 2276 ESIKKLYKKI-NAFKLLNISHINEKYFDISKEFDNIIQLQKHKLTENLNDLKEIDQYISD 2334

Query: 277  VGQKIDHLLSDFSS-----------KMKSKETSAF-LENIADSTS-NMRSSISAIREITD 323
                  H L++ ++            + ++E  A  +ENI +  + N+   I  I ++T+
Sbjct: 2335 KKNIFLHALNENTNFNFNALKEIYDDIINRENKADEIENINNKENENIMQYIDTITKLTE 2394

Query: 324  QRQKIISTINTIEN-------------------ITSNLNDSSQKFAELMSKINNISA 361
            + Q I+  + T EN                   I  NL  + Q F E+++KI+ I A
Sbjct: 2395 KIQDILIFVTTYENDNNIIKQHIQDNDENDVSKIKDNLKKTIQSFQEILNKIDEIKA 2451


>gnl|CDD|148118 pfam06314, ADC, Acetoacetate decarboxylase (ADC).  This family
          consists of several acetoacetate decarboxylase (ADC)
          proteins (EC:4.1.1.4).
          Length = 239

 Score = 30.8 bits (70), Expect = 0.71
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 11/57 (19%)

Query: 22 FFSIYWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRFNGIPVGRIVGLFLDQEYP 78
                +  S+   GP  E  I +P           VR+ G        +++D E  
Sbjct: 52 AVEFARMPDSSFGFGPYTEAGIVVP-----------VRYGGKEGAYCHFMYVDNEAA 97


>gnl|CDD|148076 pfam06248, Zw10, Centromere/kinetochore Zw10.  Zw10 and rough deal
           proteins are both required for correct metaphase
           check-pointing during mitosis. These proteins bind to
           the centromere/kinetochore.
          Length = 571

 Score = 30.4 bits (69), Expect = 1.0
 Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 18/154 (11%)

Query: 222 DLITSLDKMIKAIDLQKVNQILENIQVSSNNFVKSSDQ--VINTVHDVRETTQTFQEVGQ 279
           D  T L K  + ++    N+  +++ V++ N + S     V+ T  + +E  +   E  +
Sbjct: 357 DNDTDLLKYAEDVNTHFANKKCQDVLVTARNLMTSDIHNTVLVTPDEAKEGERLGNENEK 416

Query: 280 KIDHLLSDFSSKMKSKETSAFLENIADSTSNMRSSISAIREIT----DQRQKIISTINTI 335
            +  L       M S+     ++ + D T         + E T        ++  TI  I
Sbjct: 417 HLSPLSFLLPRCMVSESVQQLMK-LLDKT---------LSEATFSSEGCADQLAYTIRNI 466

Query: 336 ENITSNLNDSSQKFAELMSKINNISALKENNSLF 369
             +    +       +L+ KI  +SAL  NN ++
Sbjct: 467 --LQLYYDVVPTYHKKLLLKIPQLSALFHNNCMY 498


>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
           primarily archaeal type.  SMC (structural maintenance of
           chromosomes) proteins bind DNA and act in organizing and
           segregating chromosomes for partition. SMC proteins are
           found in bacteria, archaea, and eukaryotes. It is found
           in a single copy and is homodimeric in prokaryotes, but
           six paralogs (excluded from this family) are found in
           eukarotes, where SMC proteins are heterodimeric. This
           family represents the SMC protein of archaea and a few
           bacteria (Aquifex, Synechocystis, etc); the SMC of other
           bacteria is described by TIGR02168. The N- and
           C-terminal domains of this protein are well conserved,
           but the central hinge region is skewed in composition
           and highly divergent.
          Length = 1164

 Score = 30.0 bits (68), Expect = 1.2
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 18/124 (14%)

Query: 316 SAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKI--------NNISALKENNS 367
              +E++D  +KI      IE +        ++  EL   +        N  S LKE  +
Sbjct: 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765

Query: 368 LFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVNHFDDCLN 427
             ++ +  +H   +    +   +          S S + +IQ  + KL+E V+  +  L 
Sbjct: 766 RIEELEEDLHKLEEALNDLEARL----------SHSRIPEIQAELSKLEEEVSRIEARLR 815

Query: 428 NFER 431
             E+
Sbjct: 816 EIEQ 819


>gnl|CDD|173321 PTZ00021, PTZ00021, falcipain-2; Provisional.
          Length = 489

 Score = 29.4 bits (66), Expect = 2.0
 Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 21/135 (15%)

Query: 280 KIDHLLSDFSSKMKSKETSAFLENIADSTSNMRSSISAIREITDQRQKIISTINTIENIT 339
           K+  L+S +  +  ++ET    E    +  + +++ S      + R+   +  N  +   
Sbjct: 95  KLQELISSYDKEKNNQETKNSGELKTFADFDGKNNKSV----ENFRKNFGNLKNVKKVYL 150

Query: 340 SNLNDSSQKFAELMSKINNISA----LKENNSLFKDA---QRAMHTFRDTSEKINRYIPS 392
            N  DS  KF  LM+ + N+++    +KE+   ++     Q+   +F +   KIN +   
Sbjct: 151 INFADS--KF--LMTNLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAH--- 203

Query: 393 IGNNLQNFS-QSGLN 406
             NN +N   + G+N
Sbjct: 204 --NNKENVLYKKGMN 216


>gnl|CDD|162917 TIGR02550, flagell_flgL, flagellar hook-associated protein 3.  This
           protein family consists of flagellar hook-associated
           proteins designated FlgL (or HAP3) encoded in bacterial
           flagellar operons. A N-terminal region of about 150
           residues and a C-terminal region of about 85 residues
           are conserved. Members show considerable length
           heterogeneity between these two well-conserved terminal
           regions; members of the family vary between 287 to over
           500 residues in length. This model distinguishes FlgL
           from the flagellin gene product FliC.
          Length = 306

 Score = 28.9 bits (65), Expect = 3.2
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 182 NIETISTVLANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVNQ 241
           +       +A+N S               ++ K+ FNT  +LI +L  +  A+       
Sbjct: 158 DGGQRKVQVASNRSMPVGHPGDKVFMSIPNNDKSVFNTGDNLIDALKSLEDALSSGDA-- 215

Query: 242 ILENIQVSSNNFVKSSDQVINTVHDV 267
               +  S N   K+ D V++   +V
Sbjct: 216 -QAALSASLNELDKALDNVLSARAEV 240


>gnl|CDD|184341 PRK13810, PRK13810, orotate phosphoribosyltransferase; Provisional.
          Length = 187

 Score = 28.7 bits (64), Expect = 3.4
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 286 SDFSSKMKSKETSAFLENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDS 345
           S F   +K ++    LE++  S  ++R +I  +RE     + +I+ ++  E    NL ++
Sbjct: 113 SRFVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREEGAEENLKEA 172

Query: 346 SQKFAELMS 354
             +   L+S
Sbjct: 173 DVELVPLVS 181


>gnl|CDD|162462 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
           ATPase.  This model describes the plasma membrane proton
           efflux P-type ATPase found in plants, fungi, protozoa,
           slime molds and archaea. The best studied representative
           is from yeast.
          Length = 755

 Score = 28.4 bits (64), Expect = 3.4
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 135 AMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIA 181
           A++TAT  G+N F   A    +     S H+QKI+  I   L   I 
Sbjct: 171 AVVTAT--GMNTFFGKAAALVQSTETGSGHLQKILSKIGLFLIVLIG 215


>gnl|CDD|178669 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; Provisional.
          Length = 815

 Score = 28.6 bits (64), Expect = 3.4
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 12/94 (12%)

Query: 269 ETTQTFQEVGQKIDHLLSDFSSKMKS--KETSAF-LENIADSTSNMRSSISAIREITDQR 325
           E  ++ +E GQK + +  DFS+K  S    T  F + +I +   +  S++  +R+I    
Sbjct: 508 EFVKSEKETGQKAEAMWLDFSNKWFSLVHSTRPFVIRDIDELADHAASALETVRDIN--- 564

Query: 326 QKIISTINTIENIT-SNLNDS-SQKFAELMSKIN 357
             + S +  I ++T S L+D  S ++ +L   I+
Sbjct: 565 --VASRL--IGDMTGSTLDDPLSDRYKKLGCSIS 594


>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase;
          Validated.
          Length = 265

 Score = 28.6 bits (64), Expect = 3.5
 Identities = 12/38 (31%), Positives = 26/38 (68%)

Query: 23 FSIYWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRF 60
          F+  WLSR+++ +   A++I  +  ++D + +D+S+RF
Sbjct: 16 FATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRF 53


>gnl|CDD|177432 PHA02607, wac, fibritin; Provisional.
          Length = 454

 Score = 28.5 bits (64), Expect = 4.2
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 214 KNTFNTITDLITSLDKMIKAIDLQKVNQILENIQVSSNNFVKSSDQVINTVHDVRETTQT 273
           KN      +   + DK+ + +D   VN I EN+ V  +  V   DQ+   V D+    + 
Sbjct: 52  KNVEQLDENTKKTKDKINEVVDD--VNTIQENLDVIGDISV--IDQINQNVADIEVLKKD 107

Query: 274 FQEVGQKIDHLLSDFSS 290
             +   K+    ++   
Sbjct: 108 VSDTTDKLAGTTNEVDE 124


>gnl|CDD|149682 pfam08702, Fib_alpha, Fibrinogen alpha/beta chain family.
           Fibrinogen is a protein involved in platelet aggregation
           and is essential for the coagulation of blood. This
           domain forms part of the central coiled coiled region of
           the protein which is formed from two sets of three
           non-identical chains (alpha, beta and gamma).
          Length = 146

 Score = 27.7 bits (62), Expect = 6.3
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 12/95 (12%)

Query: 165 IQKIIENIEKPLTTTIANIETISTVLANN-------ISHIDKMMHTTQVTPHSSDSKNTF 217
           IQ +++  EK +   I ++E +   LAN+       + HI   +   Q    +  + N +
Sbjct: 23  IQDLLDKYEKDVDKRIEDLENLLDQLANSTSSAHQYVKHIKDSLRGDQ--KQAQPNDNIY 80

Query: 218 NTITDLITSLDKMIKAIDLQKVNQILENIQVSSNN 252
           N  +    SL KMI+ I   K+N     I+V    
Sbjct: 81  NAYSK---SLRKMIEYILETKINTQESQIRVLQEV 112


>gnl|CDD|163138 TIGR03110, exosort_Gpos, exosortase family protein.  Members of
          this protein family are found in a modest number of
          non-pathogenic Gram-positive bacteria, including three
          species of Lactococcus and three paralogs in
          Clostridium acetobutylicum. This protein appears
          related to the conserved core region of a family of
          proposed transpeptidases, exosortase (previously EpsH),
          thought to act on PEP-CTERM proteins, and members of
          the seed alignment include all proposed active site
          residues. However, in contrast to mainline exosortase
          (TIGR02602) and archaeal (TIGR03762), and
          cyanobacterial (TIGR03763) variants, this family has
          not yet been matched to a cognate PEP-CTERM-like
          sorting signal.
          Length = 187

 Score = 27.7 bits (62), Expect = 6.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 9  SVGLFVVSILFFSFFSIYWLSR 30
          SVGLF +   FF  + +++LSR
Sbjct: 31 SVGLFFILTFFFRNYLVWFLSR 52


>gnl|CDD|150104 pfam09325, Vps5, Vps5 C terminal like.  Vps5 is a sorting nexin
           that functions in membrane trafficking. This is the C
           terminal dimerization domain.
          Length = 236

 Score = 27.2 bits (61), Expect = 8.1
 Identities = 37/211 (17%), Positives = 73/211 (34%), Gaps = 35/211 (16%)

Query: 197 IDKMMHTTQVTPHSSDSKNT-----FNTITDLITSLDKMIKAIDLQKVNQILENIQVSSN 251
           +  +      +   S  K       F      I SL+       L+K+ + LE +     
Sbjct: 1   LKGLFGKFTSSVSKSTYKFNEPDPWFEDKRQYIDSLES-----QLKKLYKALELLVNQRK 55

Query: 252 NFVKSSD---QVINTVHDVRETT------QTFQEVGQKIDHLLSDFSSKMKSKETSAFLE 302
               ++    + +  +  +  +T          EV ++I  LL   + +    +     E
Sbjct: 56  ELASATGEFAKSLAMLASLELSTGLSRALSQLAEVEERIKELLERQALQ----DVLTLGE 111

Query: 303 NIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINN---- 358
            I +    +R  I +++ + +QR K        E    +L+    + A+L     +    
Sbjct: 112 TIDE---YLRL-IGSVKAVFNQRVKAWQQWQNAEQ---DLSKKRAQLAKLKGAGKSRQDK 164

Query: 359 -ISALKENNSLFKDAQRAMHTFRDTSEKINR 388
              A KE +   +  Q+A   F D SE I +
Sbjct: 165 LQQAKKEVDEAERKVQQAKKEFEDISETIKK 195


>gnl|CDD|150441 pfam09770, PAT1, Topoisomerase II-associated protein PAT1.  Members
           of this family are necessary for accurate chromosome
           transmission during cell division.
          Length = 792

 Score = 27.4 bits (61), Expect = 8.3
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 150 NAENTSKKISDSSRHIQKIIENIEKPL--------TTTIANIETISTVLANNISHIDKMM 201
           ++    +  S + + I   IEN+ K L        T     I+ I    A   + ++++ 
Sbjct: 484 SSSLGIRDKSGTRKDILSAIENVYKLLLELEDLERTMPPPAIDEIMEWRAEGQALVEQLW 543

Query: 202 HTTQVTPHSSDSKNTFNTITDLITSLDKMIKAI 234
               V     D   + +    ++ S  K  K +
Sbjct: 544 EELHVMEPIEDDSLSPHPFISML-SYPKGKKIL 575


>gnl|CDD|180134 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase;
           Reviewed.
          Length = 486

 Score = 27.1 bits (61), Expect = 8.6
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 343 NDSSQKFAELMSKINNISALKENNSLFKDAQRAMHTFR 380
            D SQ  +E+M+K   ++   E  +L ++A   +H  R
Sbjct: 143 TDLSQPVSEVMTKERLVTV-PEGTTL-EEALELLHEHR 178


>gnl|CDD|182099 PRK09831, PRK09831, putative acyltransferase; Provisional.
          Length = 147

 Score = 27.2 bits (60), Expect = 8.7
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 10/54 (18%)

Query: 55  DSSVR---FNGIPVGRIVG-------LFLDQEYPNHSLAKALIRPDTPLYPSTT 98
            S VR    N  PVG I         LF+D EY    +A AL++P        T
Sbjct: 52  KSQVRVAVINAQPVGFITCIEHYIDMLFVDPEYTRRGVASALLKPLIKSESELT 105


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.314    0.129    0.350 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,779,275
Number of extensions: 421045
Number of successful extensions: 1274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1245
Number of HSP's successfully gapped: 97
Length of query: 452
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 355
Effective length of database: 3,898,497
Effective search space: 1383966435
Effective search space used: 1383966435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)