RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus Liberibacter asiaticus str. psy62] (452 letters) >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 45.5 bits (107), Expect = 1e-05 Identities = 28/200 (14%), Positives = 57/200 (28%), Gaps = 51/200 (25%) Query: 276 EVGQK--IDHLLSDF------SSKMKSKETSAFLENIADSTSNMRSSISAI-----REIT 322 ++ Q+ + LLS+ S+ + +T+AF + AI RE+ Sbjct: 144 KI-QEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELA 202 Query: 323 DQRQKIISTINTIENITSNLNDSSQKFAELMSKINNISA-------LKENNSLFK----- 370 Q +++ + + + + L + L Sbjct: 203 RQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKV 262 Query: 371 ----DAQRAMHT--FRDTSEKINRYIPSIGNNLQN--FSQSGLNDIQNLVRKLQETVNHF 422 +A + D S +I +P N Q FS + ++ + Sbjct: 263 FVLDEADNMLDQQGLGDQSMRIKHLLP---RNTQIVLFSATFSERVEKYAER-------- 311 Query: 423 DDCLNNFERNPQDIVWGREK 442 F N +I E+ Sbjct: 312 ------FAPNANEIRLKTEE 325 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 33.3 bits (76), Expect = 0.058 Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 12/55 (21%) Query: 396 NLQNFSQSGLNDIQNL-VRKLQETVNHFDDCLNNFERNPQDI--------VWGRE 441 + F +I N +L+ + N+F + I + ++ Sbjct: 62 DQNEFLLERTREIHNEAESQLRAAQQQWG---NDFYKRDPRIAPLRGALATYSKD 113 >1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} (C:78-273) Length = 196 Score = 31.9 bits (72), Expect = 0.16 Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 2/31 (6%) Query: 12 LFVVS--ILFFSFFSIYWLSRSNQYDGPMAE 40 LF++S + F ++F + + Sbjct: 15 LFIMSEVMFFVAWFWAFIKNALYPMGPDSPI 45 >1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} (C:71-266) Length = 196 Score = 32.0 bits (72), Expect = 0.16 Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 2/31 (6%) Query: 12 LFVVS--ILFFSFFSIYWLSRSNQYDGPMAE 40 LF++S + F ++F ++ Sbjct: 15 LFIMSEVMFFSAWFWSFFKHALYPMGPESPI 45 >1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} (A:) Length = 196 Score = 31.3 bits (70), Expect = 0.29 Identities = 19/160 (11%), Positives = 52/160 (32%), Gaps = 3/160 (1%) Query: 258 DQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAFLENIADSTSNMRSSISA 317 +N + + + ++D L +++ ++ S ++ + + Sbjct: 5 VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFK 64 Query: 318 IREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNISALKENNSLFKDAQRAMH 377 ++ Q+ + N Q+F +L+ + + + + + ++ M Sbjct: 65 LKNEIKSAQRDGIHDTNKQAQAENS---RQRFLKLIQDYRIVDSNYKEENKEQAKRQYMI 121 Query: 378 TFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQE 417 + +E S Q FSQ+ LN + K Sbjct: 122 IQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTAL 161 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:389-434,A:733-794) Length = 108 Score = 30.1 bits (68), Expect = 0.51 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 4/46 (8%) Query: 300 FLENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDS 345 F+ + + T+ +R + E ++ R K +S +E+ N N + Sbjct: 47 FVPELKEFTAKLRKELV---ETSEVR-KAVSIETALEHKVVNGNSA 88 >1szi_A TIP47, mannose-6-phosphate receptor binding protein 1; 4-helix bundle, alpha/beta domain, PAT protein, lipid binding, peptide binding; 2.80A {Mus musculus} (A:) Length = 247 Score = 30.3 bits (68), Expect = 0.58 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 2/109 (1%) Query: 314 SISAIREITDQRQKIISTIN-TIENITSNLNDSSQKFAELMSKINNISALKENNSLFKDA 372 S+ ++ + Q+ + + + + S Q+ E K++ + L N +DA Sbjct: 68 SLGKLQNARQKAQETLQQLTSVLGLMESVKQGVDQRLGEGQEKLHQM-WLSWNQKTPQDA 126 Query: 373 QRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVNH 421 ++ + I LQ+ + IQ L ++E Sbjct: 127 EKDPAKPEQVEARALSMFRDITQQLQSMCVALGASIQGLPSHVREQAQQ 175 >1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} (A:132-256) Length = 125 Score = 29.3 bits (66), Expect = 0.98 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 18/133 (13%) Query: 144 INYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETISTVLANNISHIDKMMHT 203 I+ F++ +EN + D ++ + + E L T I A + H+ Sbjct: 1 IDDFLAVSENHILE--DVNKCVIALQEKDVDGLDRTAGAIRG----RAARVIHV-----V 49 Query: 204 TQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVNQILENI------QVSSNNFVKSS 257 T + T + + L + ++V +E + N F+ +S Sbjct: 50 TSEXDNYEPGVYT-EKVLEATKLLSNTVXPRFTEQVEAAVEALSSDPAQPXDENEFIDAS 108 Query: 258 DQVINTVHDVRET 270 V + + D+R+ Sbjct: 109 RLVYDGIRDIRKA 121 >2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions, IGG-like domain, cell adhesion; 1.80A {Streptococcus agalactiae} (A:1-121) Length = 121 Score = 28.8 bits (64), Expect = 1.4 Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 98 TATIRTQGLAGITYIELSTLRKEKKTIFQIATERNQRAMITATPSGINY 146 +T LA + ++ L+K+ + +F+ T + +A P GI Y Sbjct: 43 KSTEDGDLLAHWNSLTITELKKQAQQVFEATTNQQGKATFNQLPDGIYY 91 >1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (C:70-261) Length = 192 Score = 28.1 bits (62), Expect = 2.3 Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%) Query: 12 LFVVS--ILFFSFFSIYWLSRS 31 LF++S + F FF ++ S Sbjct: 16 LFIISEVLFFTGFFWAFYHSSL 37 >3c98_B Revised Structure Of The Munc18a-Syntaxin1 Complex {Rattus norvegicus} (B:) Length = 279 Score = 27.7 bits (60), Expect = 3.2 Identities = 13/141 (9%), Positives = 42/141 (29%), Gaps = 7/141 (4%) Query: 302 ENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNISA 361 D M + EI KI + ++ S + S + ++ + + Sbjct: 33 TVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMS 92 Query: 362 LKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVNH 421 + + + + E+ + + + L RK E ++ Sbjct: 93 --DIKKTANKVRSKLKSI----EQSIEQEEGLNRSSADLRIR-KTQHSTLSRKFVEVMSE 145 Query: 422 FDDCLNNFERNPQDIVWGREK 442 ++ +++ + + + + Sbjct: 146 YNATQSDYRERCKGRIQRQLE 166 >3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} (A:139-329) Length = 191 Score = 27.2 bits (60), Expect = 4.1 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 4/48 (8%) Query: 1 MESKNYYTSVGLFVV--SILFFS-FFSIYWLSRSNQYDGPMAEVIIRI 45 + + S LF+S F+ +LS + A++I I Sbjct: 14 YNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTN-TADIIRLI 60 >1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism, oxidoreductase; 2.10A {Salmonella typhimurium} (A:129-319) Length = 191 Score = 27.2 bits (60), Expect = 4.1 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 4/48 (8%) Query: 1 MESKNYYTSVGLFVV--SILFFS-FFSIYWLSRSNQYDGPMAEVIIRI 45 S V S LF+S F+ + S + A++I I Sbjct: 14 YVSDEPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTN-TADLIRLI 60 >1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} (A:) Length = 127 Score = 27.2 bits (60), Expect = 4.8 Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 7/117 (5%) Query: 306 DSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNISALKEN 365 D M + EI KI + ++ S + S + ++ + + + Sbjct: 2 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMS--DI 59 Query: 366 NSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVNHF 422 + + + + E+ S + +Q L RK E ++ + Sbjct: 60 KKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQ-----HSTLSRKFVEVMSEY 111 >2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus} (A:) Length = 253 Score = 27.0 bits (59), Expect = 5.0 Identities = 15/147 (10%), Positives = 40/147 (27%), Gaps = 10/147 (6%) Query: 306 DSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKI-----NNIS 360 ++ IS + + I+ +++ ++ F + K+ N Sbjct: 14 ALGGLFQTIISDXKGSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADXATNTRG 73 Query: 361 ALKENNSLFK---DAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQE 417 +E S R++ + + I + N LQ + L + + Sbjct: 74 GTREIGSALTRXCXRHRSIEAKLR--QFSSALIDCLINPLQEQXEEWKKVANQLDKDHAK 131 Query: 418 TVNHFDDCLNNFERNPQDIVWGREKGS 444 + + + +K Sbjct: 132 EYKKARQEIKKKSSDTLKLQKKAKKVD 158 >1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} (A:219-390) Length = 172 Score = 26.9 bits (59), Expect = 5.1 Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 4/45 (8%) Query: 4 KNYYTSVGLFVV--SILFFS-FFSIYWLSRSNQYDGPMAEVIIRI 45 Y V F I F F SI+WL + G + I Sbjct: 2 ATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPG-LTFSNELI 45 >2aj4_A Galactokinase; galactosemia, transcription, transferase; HET: GLA ANP; 2.40A {Saccharomyces cerevisiae} (A:288-436) Length = 149 Score = 26.8 bits (59), Expect = 5.4 Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 5/48 (10%) Query: 334 TIENITSNLNDSSQKFAELMSKINNISALKENNSLFKDAQRAMHTFRD 381 +++++ +LN S ++F + ++ + K QRA H + + Sbjct: 91 SVDDVAQSLNCSREEFTR-----DYLTTSPVRFQVLKLYQRAKHVYSE 133 >2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium} (A:) Length = 248 Score = 26.6 bits (57), Expect = 7.2 Identities = 19/226 (8%), Positives = 53/226 (23%) Query: 131 RNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETISTVL 190 +A + + +S + IQ E I T+++ + S Sbjct: 15 SQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLAT 74 Query: 191 ANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVNQILENIQVSS 250 M + + T + Q+ + Sbjct: 75 DLQGIRDQLMNLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQQVDSARTMVI 134 Query: 251 NNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAFLENIADSTSN 310 + I + ++ + + A Sbjct: 135 GHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAIAALKTPVEGNNVEKEKAAAAIDKT 194 Query: 311 MRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKI 356 R +++ + R ++ + ++ + + S +D + MS + Sbjct: 195 NRGLKNSLNNVLTVRAELGTQLSELSTLDSLGSDRALGQKLQMSNL 240 >1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis/exocytosis complex; 3.34A {Loligo pealei} (A:) Length = 180 Score = 26.5 bits (58), Expect = 8.0 Identities = 13/133 (9%), Positives = 36/133 (27%), Gaps = 21/133 (15%) Query: 298 SAFLENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKIN 357 F E + + + + + + + I+S T + + L + Sbjct: 39 EEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDI-------- 90 Query: 358 NISALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQE 417 + + T E+ S + +Q + RK E Sbjct: 91 --------KRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQ-----YSTISRKFVE 137 Query: 418 TVNHFDDCLNNFE 430 ++ ++ ++ Sbjct: 138 VMSDYNTTQIDYR 150 >1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A (A:718-865) Length = 148 Score = 26.3 bits (58), Expect = 8.1 Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 251 NNFVKSSDQVINTVHDVRETTQ 272 +F+ S +++ V VRE Q Sbjct: 98 KSFLDSGYRILGAVAKVREAFQ 119 >2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T (T:) Length = 95 Score = 26.4 bits (58), Expect = 8.1 Identities = 16/64 (25%), Positives = 32/64 (50%) Query: 379 FRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVNHFDDCLNNFERNPQDIVW 438 +DT E++NR I + +IQ++++ ++ET+ D + +R+ + V Sbjct: 12 VKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVS 71 Query: 439 GREK 442 GRE Sbjct: 72 GREA 75 >2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} (A:161-311) Length = 151 Score = 26.4 bits (58), Expect = 8.4 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Query: 2 ESKNYYTSVGLFVV--SILFFSFF-SIYWLSRSNQYDGPMAEVIIRI 45 ++ ++ + ILF F +I+W + N+ G + I Sbjct: 16 DTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHG-LTFSNELI 61 >1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (A:1-103,A:228-419) Length = 295 Score = 26.1 bits (57), Expect = 10.0 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 4/45 (8%) Query: 4 KNYYTSVGLFVV--SILFFS-FFSIYWLSRSNQYDGPMAEVIIRI 45 + + F + F F SI+WL + G + I Sbjct: 122 ALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPG-LTFSNELI 165 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.314 0.129 0.350 Gapped Lambda K H 0.267 0.0643 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,952,578 Number of extensions: 124017 Number of successful extensions: 492 Number of sequences better than 10.0: 1 Number of HSP's gapped: 479 Number of HSP's successfully gapped: 68 Length of query: 452 Length of database: 4,956,049 Length adjustment: 91 Effective length of query: 361 Effective length of database: 1,879,794 Effective search space: 678605634 Effective search space used: 678605634 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 56 (25.5 bits)