RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780140|ref|YP_003064553.1| putative ABC transporter,
substrate-binding protein [Candidatus Liberibacter asiaticus str.
psy62]
         (452 letters)



>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 28/200 (14%), Positives = 57/200 (28%), Gaps = 51/200 (25%)

Query: 276 EVGQK--IDHLLSDF------SSKMKSKETSAFLENIADSTSNMRSSISAI-----REIT 322
           ++ Q+  +  LLS+        S+  + +T+AF   +            AI     RE+ 
Sbjct: 144 KI-QEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELA 202

Query: 323 DQRQKIISTINTIENITSNLNDSSQKFAELMSKINNISA-------LKENNSLFK----- 370
            Q   +++ +     + +                  +         L +   L       
Sbjct: 203 RQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKV 262

Query: 371 ----DAQRAMHT--FRDTSEKINRYIPSIGNNLQN--FSQSGLNDIQNLVRKLQETVNHF 422
               +A   +      D S +I   +P    N Q   FS +    ++    +        
Sbjct: 263 FVLDEADNMLDQQGLGDQSMRIKHLLP---RNTQIVLFSATFSERVEKYAER-------- 311

Query: 423 DDCLNNFERNPQDIVWGREK 442
                 F  N  +I    E+
Sbjct: 312 ------FAPNANEIRLKTEE 325


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 33.3 bits (76), Expect = 0.058
 Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 12/55 (21%)

Query: 396 NLQNFSQSGLNDIQNL-VRKLQETVNHFDDCLNNFERNPQDI--------VWGRE 441
           +   F      +I N    +L+     +    N+F +    I         + ++
Sbjct: 62  DQNEFLLERTREIHNEAESQLRAAQQQWG---NDFYKRDPRIAPLRGALATYSKD 113


>1qle_C Cytochrome C oxidase polypeptide III;
          oxidoreductase/immune system, complex
          (oxidoreductase/antibody), electron transport; HET: HEA
          PC1; 3.0A {Paracoccus denitrificans} (C:78-273)
          Length = 196

 Score = 31.9 bits (72), Expect = 0.16
 Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 2/31 (6%)

Query: 12 LFVVS--ILFFSFFSIYWLSRSNQYDGPMAE 40
          LF++S  + F ++F  +  +           
Sbjct: 15 LFIMSEVMFFVAWFWAFIKNALYPMGPDSPI 45


>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase;
          HET: HEA PEH; 2.30A {Rhodobacter sphaeroides}
          (C:71-266)
          Length = 196

 Score = 32.0 bits (72), Expect = 0.16
 Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 2/31 (6%)

Query: 12 LFVVS--ILFFSFFSIYWLSRSNQYDGPMAE 40
          LF++S  + F ++F  ++             
Sbjct: 15 LFIMSEVMFFSAWFWSFFKHALYPMGPESPI 45


>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane
           protein; 2.10A {Saccharomyces cerevisiae} (A:)
          Length = 196

 Score = 31.3 bits (70), Expect = 0.29
 Identities = 19/160 (11%), Positives = 52/160 (32%), Gaps = 3/160 (1%)

Query: 258 DQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAFLENIADSTSNMRSSISA 317
              +N +  +      +     ++D L     +++  ++ S    ++ +  +        
Sbjct: 5   VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFK 64

Query: 318 IREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNISALKENNSLFKDAQRAMH 377
           ++      Q+        +    N     Q+F +L+     + +  +  +  +  ++ M 
Sbjct: 65  LKNEIKSAQRDGIHDTNKQAQAENS---RQRFLKLIQDYRIVDSNYKEENKEQAKRQYMI 121

Query: 378 TFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQE 417
              + +E       S     Q FSQ+ LN  +    K   
Sbjct: 122 IQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTAL 161


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:389-434,A:733-794)
          Length = 108

 Score = 30.1 bits (68), Expect = 0.51
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 300 FLENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDS 345
           F+  + + T+ +R  +    E ++ R K +S    +E+   N N +
Sbjct: 47  FVPELKEFTAKLRKELV---ETSEVR-KAVSIETALEHKVVNGNSA 88


>1szi_A TIP47, mannose-6-phosphate receptor binding protein 1;
           4-helix bundle, alpha/beta domain, PAT protein, lipid
           binding, peptide binding; 2.80A {Mus musculus} (A:)
          Length = 247

 Score = 30.3 bits (68), Expect = 0.58
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 2/109 (1%)

Query: 314 SISAIREITDQRQKIISTIN-TIENITSNLNDSSQKFAELMSKINNISALKENNSLFKDA 372
           S+  ++    + Q+ +  +   +  + S      Q+  E   K++ +  L  N    +DA
Sbjct: 68  SLGKLQNARQKAQETLQQLTSVLGLMESVKQGVDQRLGEGQEKLHQM-WLSWNQKTPQDA 126

Query: 373 QRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVNH 421
           ++          +       I   LQ+   +    IQ L   ++E    
Sbjct: 127 EKDPAKPEQVEARALSMFRDITQQLQSMCVALGASIQGLPSHVREQAQQ 175


>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A
           {Homo sapiens} (A:132-256)
          Length = 125

 Score = 29.3 bits (66), Expect = 0.98
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 18/133 (13%)

Query: 144 INYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETISTVLANNISHIDKMMHT 203
           I+ F++ +EN   +  D ++ +  + E     L  T   I       A  + H+      
Sbjct: 1   IDDFLAVSENHILE--DVNKCVIALQEKDVDGLDRTAGAIRG----RAARVIHV-----V 49

Query: 204 TQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVNQILENI------QVSSNNFVKSS 257
           T    +      T   + +    L   +     ++V   +E +          N F+ +S
Sbjct: 50  TSEXDNYEPGVYT-EKVLEATKLLSNTVXPRFTEQVEAAVEALSSDPAQPXDENEFIDAS 108

Query: 258 DQVINTVHDVRET 270
             V + + D+R+ 
Sbjct: 109 RLVYDGIRDIRKA 121


>2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions,
           IGG-like domain, cell adhesion; 1.80A {Streptococcus
           agalactiae} (A:1-121)
          Length = 121

 Score = 28.8 bits (64), Expect = 1.4
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 98  TATIRTQGLAGITYIELSTLRKEKKTIFQIATERNQRAMITATPSGINY 146
            +T     LA    + ++ L+K+ + +F+  T +  +A     P GI Y
Sbjct: 43  KSTEDGDLLAHWNSLTITELKKQAQQVFEATTNQQGKATFNQLPDGIYY 91


>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET:
          FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos
          taurus} (C:70-261)
          Length = 192

 Score = 28.1 bits (62), Expect = 2.3
 Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 12 LFVVS--ILFFSFFSIYWLSRS 31
          LF++S  + F  FF  ++ S  
Sbjct: 16 LFIISEVLFFTGFFWAFYHSSL 37


>3c98_B Revised Structure Of The Munc18a-Syntaxin1 Complex {Rattus
           norvegicus} (B:)
          Length = 279

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 13/141 (9%), Positives = 42/141 (29%), Gaps = 7/141 (4%)

Query: 302 ENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNISA 361
               D    M      + EI     KI   +  ++   S +  S     +   ++  + +
Sbjct: 33  TVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMS 92

Query: 362 LKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVNH 421
             +        +  + +     E+       +  +  +           L RK  E ++ 
Sbjct: 93  --DIKKTANKVRSKLKSI----EQSIEQEEGLNRSSADLRIR-KTQHSTLSRKFVEVMSE 145

Query: 422 FDDCLNNFERNPQDIVWGREK 442
           ++   +++    +  +  + +
Sbjct: 146 YNATQSDYRERCKGRIQRQLE 166


>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen
          bond, metal binding protein; 1.63A {Corynebacterium
          ammoniagenes} (A:139-329)
          Length = 191

 Score = 27.2 bits (60), Expect = 4.1
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 1  MESKNYYTSVGLFVV--SILFFS-FFSIYWLSRSNQYDGPMAEVIIRI 45
              +         +  S LF+S F+   +LS   +     A++I  I
Sbjct: 14 YNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTN-TADIIRLI 60


>1r2f_A Protein (ribonucleotide reductase R2); nucleotide
          metabolism, oxidoreductase; 2.10A {Salmonella
          typhimurium} (A:129-319)
          Length = 191

 Score = 27.2 bits (60), Expect = 4.1
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 1  MESKNYYTSVGLFVV--SILFFS-FFSIYWLSRSNQYDGPMAEVIIRI 45
            S          V   S LF+S F+   + S   +     A++I  I
Sbjct: 14 YVSDEPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTN-TADLIRLI 60


>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis
           complex; 1.90A {Rattus norvegicus} (A:)
          Length = 127

 Score = 27.2 bits (60), Expect = 4.8
 Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 7/117 (5%)

Query: 306 DSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNISALKEN 365
           D    M      + EI     KI   +  ++   S +  S     +   ++  + +  + 
Sbjct: 2   DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMS--DI 59

Query: 366 NSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVNHF 422
                  +  + +   + E+      S  +     +Q        L RK  E ++ +
Sbjct: 60  KKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQ-----HSTLSRKFVEVMSEY 111


>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD,
           protein binding; HET: MSE; 1.85A {Mus musculus} (A:)
          Length = 253

 Score = 27.0 bits (59), Expect = 5.0
 Identities = 15/147 (10%), Positives = 40/147 (27%), Gaps = 10/147 (6%)

Query: 306 DSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKI-----NNIS 360
                 ++ IS  +      +  I+    +++       ++  F +   K+     N   
Sbjct: 14  ALGGLFQTIISDXKGSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADXATNTRG 73

Query: 361 ALKENNSLFK---DAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQE 417
             +E  S         R++       +  +  I  + N LQ   +        L +   +
Sbjct: 74  GTREIGSALTRXCXRHRSIEAKLR--QFSSALIDCLINPLQEQXEEWKKVANQLDKDHAK 131

Query: 418 TVNHFDDCLNNFERNPQDIVWGREKGS 444
                   +     +   +    +K  
Sbjct: 132 EYKKARQEIKKKSSDTLKLQKKAKKVD 158


>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase,
          ribonucleotide reductase, dinuclear metal-cluster; 2.2A
          {Mus musculus} (A:219-390)
          Length = 172

 Score = 26.9 bits (59), Expect = 5.1
 Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 4  KNYYTSVGLFVV--SILFFS-FFSIYWLSRSNQYDGPMAEVIIRI 45
            Y   V  F     I F   F SI+WL +     G +      I
Sbjct: 2  ATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPG-LTFSNELI 45


>2aj4_A Galactokinase; galactosemia, transcription, transferase;
           HET: GLA ANP; 2.40A {Saccharomyces cerevisiae}
           (A:288-436)
          Length = 149

 Score = 26.8 bits (59), Expect = 5.4
 Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 334 TIENITSNLNDSSQKFAELMSKINNISALKENNSLFKDAQRAMHTFRD 381
           +++++  +LN S ++F       + ++       + K  QRA H + +
Sbjct: 91  SVDDVAQSLNCSREEFTR-----DYLTTSPVRFQVLKLYQRAKHVYSE 133


>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein,
           alpha-helical bundle, complex all- beta folds,
           structural protein; 1.90A {Salmonella typhimurium} (A:)
          Length = 248

 Score = 26.6 bits (57), Expect = 7.2
 Identities = 19/226 (8%), Positives = 53/226 (23%)

Query: 131 RNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETISTVL 190
              +A  +       +           +S  +  IQ   E I      T+++ +  S   
Sbjct: 15  SQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLAT 74

Query: 191 ANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVNQILENIQVSS 250
                    M        +       + T               +     Q+     +  
Sbjct: 75  DLQGIRDQLMNLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQQVDSARTMVI 134

Query: 251 NNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAFLENIADSTSN 310
            +        I +           ++    +                    +  A     
Sbjct: 135 GHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAIAALKTPVEGNNVEKEKAAAAIDKT 194

Query: 311 MRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKI 356
            R   +++  +   R ++ + ++ +  + S  +D +      MS +
Sbjct: 195 NRGLKNSLNNVLTVRAELGTQLSELSTLDSLGSDRALGQKLQMSNL 240


>1s94_A S-syntaxin; three helix bundle, structural plasticity,
           endocytosis/exocytosis complex; 3.34A {Loligo pealei}
           (A:)
          Length = 180

 Score = 26.5 bits (58), Expect = 8.0
 Identities = 13/133 (9%), Positives = 36/133 (27%), Gaps = 21/133 (15%)

Query: 298 SAFLENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKIN 357
             F E + +  + +      +  +  +   I+S   T + +   L +             
Sbjct: 39  EEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDI-------- 90

Query: 358 NISALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQE 417
                          +  + T     E+      S  +     +Q        + RK  E
Sbjct: 91  --------KRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQ-----YSTISRKFVE 137

Query: 418 TVNHFDDCLNNFE 430
            ++ ++    ++ 
Sbjct: 138 VMSDYNTTQIDYR 150


>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A
           {Homo sapiens} PDB: 1st6_A (A:718-865)
          Length = 148

 Score = 26.3 bits (58), Expect = 8.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 251 NNFVKSSDQVINTVHDVRETTQ 272
            +F+ S  +++  V  VRE  Q
Sbjct: 98  KSFLDSGYRILGAVAKVREAFQ 119


>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment
           protein 1; protein transport/complex, snare, VFT
           complex, protein transport, phosphorylation; 2.05A
           {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T (T:)
          Length = 95

 Score = 26.4 bits (58), Expect = 8.1
 Identities = 16/64 (25%), Positives = 32/64 (50%)

Query: 379 FRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVNHFDDCLNNFERNPQDIVW 438
            +DT E++NR    I  +          +IQ++++ ++ET+   D  +   +R+  + V 
Sbjct: 12  VKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVS 71

Query: 439 GREK 442
           GRE 
Sbjct: 72  GREA 75


>2o1z_A Ribonucleotide reductase subunit R2; small subunit
          ribonucleotide reductase, oxidoreductase, DNA
          replication, iron, DIIRON, radical, R2 subunit; 2.40A
          {Plasmodium vivax} (A:161-311)
          Length = 151

 Score = 26.4 bits (58), Expect = 8.4
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 2  ESKNYYTSVGLFVV--SILFFSFF-SIYWLSRSNQYDGPMAEVIIRI 45
          ++ ++   +        ILF   F +I+W  + N+  G +      I
Sbjct: 16 DTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHG-LTFSNELI 61


>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
           ribonucleotide reductase, oxidoreductase; 2.80A
           {Saccharomyces cerevisiae} (A:1-103,A:228-419)
          Length = 295

 Score = 26.1 bits (57), Expect = 10.0
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 4   KNYYTSVGLFVV--SILFFS-FFSIYWLSRSNQYDGPMAEVIIRI 45
             +   +  F     + F   F SI+WL +     G +      I
Sbjct: 122 ALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPG-LTFSNELI 165


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.129    0.350 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,952,578
Number of extensions: 124017
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 68
Length of query: 452
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 361
Effective length of database: 1,879,794
Effective search space: 678605634
Effective search space used: 678605634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.5 bits)