RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780140|ref|YP_003064553.1| putative ABC transporter,
substrate-binding protein [Candidatus Liberibacter asiaticus str.
psy62]
(452 letters)
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III
{Escherichia coli [TaxId: 562]}
Length = 185
Score = 35.8 bits (82), Expect = 0.007
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 12 LFVVS--ILFFSFFSIYWLSRSNQYDGPMAEVIIRIP 46
++++S ILF F+ Y + + GP + I +P
Sbjct: 13 IYLMSDCILFSILFATYAVLVNGTAGGPTGKDIFELP 49
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 196
Score = 30.1 bits (67), Expect = 0.36
Identities = 20/167 (11%), Positives = 51/167 (30%), Gaps = 2/167 (1%)
Query: 251 NNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAFLENIADSTSN 310
++FV +++ D+ + T +V LL++ + + S + +A +T
Sbjct: 2 HDFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDL 61
Query: 311 MRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNISALKENNSLFK 370
+ I+ + EN Q + + S KE
Sbjct: 62 QFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYK--EENKEQAKRQY 119
Query: 371 DAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQE 417
+ T + I+ + + + + + + ++Q
Sbjct: 120 MIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQA 166
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 29.7 bits (66), Expect = 0.52
Identities = 37/330 (11%), Positives = 99/330 (30%), Gaps = 36/330 (10%)
Query: 109 ITYIELSTLRKEKKTIFQIATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKI 168
I Y+ +S L + ++ + + + P F+ A + + +++
Sbjct: 85 IGYLFISVLVNSNSELIRLINNAIKNDLASRNP----TFMGLALHCIANV-----GSREM 135
Query: 169 IENIEKPLTTTIANIETISTVLANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLD 228
E + + +T+ +V + + ++ + +P + + + L+
Sbjct: 136 AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLY---RTSPDLVPMGDWTSRVVHLLNDQH 192
Query: 229 KMIKAIDLQKVNQILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDF 288
+ + I Q + F S ++ + + + T D+
Sbjct: 193 LGVV---TAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSAST-----DLQDYTYYFV 244
Query: 289 SSKMKSKETSAFLENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQK 348
+ S + L+ + +T+ + I++ + + S+ K
Sbjct: 245 PAPWLSVKLLRLLQCYPPPEDP-----AVRGRLTECLETILNKAQEP-PKSKKVQHSNAK 298
Query: 349 FAELMSKINNISALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDI 408
A L I+ I +L A + F E RY+ + + +
Sbjct: 299 NAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYL----------ALESMCTL 348
Query: 409 QNLVRKLQETVNHFDDCLNNFERNPQDIVW 438
+ + H + +N + V
Sbjct: 349 ASSEFSHEAVKTHIETVINALKTERDVSVR 378
>d1u3em2 d.285.1.1 (M:106-174) Intron-encoded homing endonuclease
I-HmuI {Bacteriophage SP01 [TaxId: 10685]}
Length = 69
Score = 28.4 bits (63), Expect = 1.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 126 QIATERNQRAMITATPSGINYFISNA 151
QIA +NQ+ +I +P GI +
Sbjct: 8 QIAKIKNQKPIIVISPDGIEKEYPST 33
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
thermophilus [TaxId: 274]}
Length = 118
Score = 28.1 bits (63), Expect = 1.5
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 342 LNDSSQKFAELMSKINNISALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFS 401
L + + K+ NS + + T ++ YIP G+NLQ S
Sbjct: 23 LKGAPFRRGVCTVVRT--VTPKKPNSALRKVAKVRLTSG---YEVTAYIPGEGHNLQEHS 77
>d3c8wa1 d.347.1.1 (A:5-254) Acetoacetate decarboxylase {Legionella
pneumophila [TaxId: 446]}
Length = 250
Score = 27.9 bits (62), Expect = 1.5
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 11/54 (20%)
Query: 25 IYWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRFNGIPVGRIVGLFLDQEYP 78
+ + G E +P VR+ G G + +FLD P
Sbjct: 67 EFIRMPDSTGFGDYTESGQVVP-----------VRYKGEEGGFTISMFLDCHAP 109
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 273
Score = 27.6 bits (61), Expect = 2.2
Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 319 REITDQRQKIISTINTIENITSNLNDS--SQKFAELMSKINNISALKEN-NSLFKDAQRA 375
R + ++ +KI + I+ I NL+D K E ++ + + F + A
Sbjct: 14 RTL-NRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDDLLVEAFAVVREA 72
Query: 376 MHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLV 412
+ + + + N ++ + + L
Sbjct: 73 SRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLT 109
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC,
catalytic domain {Bacillus subtilis [TaxId: 1423]}
Length = 275
Score = 27.2 bits (59), Expect = 2.7
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 165 IQKIIENIEKPLTTTIANIETISTVLANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLI 224
I + I T + A T + V A +I+ + +HT H D +N IT++I
Sbjct: 196 IPYQFDAIAGGGTDSGAIHLTANGVPALSITIATRYIHTHAAMLHRDDYENAVKLITEVI 255
Query: 225 TSLDK 229
LD+
Sbjct: 256 KKLDR 260
>d1h6ga2 a.24.9.1 (A:508-631) alpha-catenin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 26.6 bits (59), Expect = 3.9
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 247 QVSSNNFVKSSDQVINTVHDVRET 270
+ N F+ +S V + + D+R+
Sbjct: 98 PMDENEFIDASRLVYDGIRDIRKA 121
>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 195
Score = 26.6 bits (58), Expect = 4.3
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 18 LFFSFFSIYWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRFNGIPVGRIVGLFLDQEY 77
LFF W+ GP + + V ++ G+++ LF +
Sbjct: 67 LFFFSGRQVWVYTGASVLGPRRLDKLGLGADVAQVTG-----ALRSGRGKML-LFSGRRL 120
Query: 78 PNHSLAKALIRPDTP 92
+ ++ P +
Sbjct: 121 WRFDVKAQMVDPRSA 135
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 137
Score = 26.7 bits (59), Expect = 4.4
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 247 QVSSNNFVKSSDQVINTVHDVRETTQT 273
+F+ S +++ V VRE Q
Sbjct: 93 PGLQKSFLDSGYRILGAVAKVREAFQP 119
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase,
central domain {Archaeon Sulfolobus solfataricus, km1
[TaxId: 2287]}
Length = 400
Score = 26.5 bits (57), Expect = 4.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 252 NFVKSSDQVINTVHDVRETTQ--TFQEVGQKIDHL 284
F+K D +I +H V T TF+ V +K+D+L
Sbjct: 5 TFLKKEDLIIYEIH-VGTFTPEGTFEGVIRKLDYL 38
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4
and 5 {Penicillium sp. [TaxId: 5081]}
Length = 182
Score = 26.2 bits (57), Expect = 5.4
Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 3/54 (5%)
Query: 25 IYWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRFNGIPVGRIVGLFLDQEYP 78
+G ++ G S+ N VG G ++
Sbjct: 64 ALLFRGHFTANGKEKTFFVQTKGGTAY---GHSIWINETYVGSWAGTSINDNNN 114
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA,
nucleotide-binding domains {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 25.7 bits (56), Expect = 8.5
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 10/76 (13%)
Query: 309 SNMRSSISAIREITDQR-----QKIISTINTIENITSNLNDSSQKFAELMSKINNISALK 363
+M +S + + + R +K+ + T+ + L D AEL +K +
Sbjct: 12 GSMADILSKLLRLGEGRMVKRLKKVADYVGTLSDDVEKLTD-----AELRAKTDEFKRRL 66
Query: 364 ENNSLFKDAQRAMHTF 379
+ + +
Sbjct: 67 ADQKNPETLDDLLPEA 82
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein
1 (Tip47), C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 226
Score = 25.6 bits (56), Expect = 9.3
Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 8/112 (7%)
Query: 314 SISAIREITDQRQKIIS----TINTIENITSNLNDSSQKFAELMSKINNISALKENNSLF 369
S+ ++ + Q+ + + +E++ ++ Q+ E K++ L N
Sbjct: 53 SLGKLQNARQKAQETLQQLTSVLGLMESVKQGVD---QRLGEGQEKLHQ-MWLSWNQKTP 108
Query: 370 KDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVNH 421
+DA++ + I LQ+ + IQ L ++E
Sbjct: 109 QDAEKDPAKPEQVEARALSMFRDITQQLQSMCVALGASIQGLPSHVREQAQQ 160
>d1nrza_ c.38.1.1 (A:) Sorbose permease subunit IIb , EIIb-sor
{Klebsiella pneumoniae [TaxId: 573]}
Length = 163
Score = 25.5 bits (56), Expect = 9.7
Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 10/97 (10%)
Query: 133 QRAMITATPSGINYFISNAENTSKKISDSSRHIQKII---ENIEKPLTTTIANIETISTV 189
+ + A P G+ + + E + + + N LT ++ I+T+
Sbjct: 44 RTLLRQAAPPGMKVNVVSLEKAVAVYHNPQYQDETVFYLFTNPHDVLTMVRQGVQ-IATL 102
Query: 190 LANNISHIDKMMHTTQVTPH---SSDSKNTFNTITDL 223
NI + Q+T F + L
Sbjct: 103 ---NIGGMAWRPGKKQLTKAVSLDPQDIQAFRELDKL 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.350
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,493,078
Number of extensions: 66823
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 33
Length of query: 452
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,199,356
Effective search space: 436565584
Effective search space used: 436565584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.9 bits)