BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus Liberibacter asiaticus str. psy62] (452 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 452 Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/452 (100%), Positives = 452/452 (100%) Query: 1 MESKNYYTSVGLFVVSILFFSFFSIYWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRF 60 MESKNYYTSVGLFVVSILFFSFFSIYWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRF Sbjct: 1 MESKNYYTSVGLFVVSILFFSFFSIYWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRF 60 Query: 61 NGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLRKE 120 NGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLRKE Sbjct: 61 NGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLRKE 120 Query: 121 KKTIFQIATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTI 180 KKTIFQIATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTI Sbjct: 121 KKTIFQIATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTI 180 Query: 181 ANIETISTVLANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVN 240 ANIETISTVLANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVN Sbjct: 181 ANIETISTVLANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVN 240 Query: 241 QILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAF 300 QILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAF Sbjct: 241 QILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAF 300 Query: 301 LENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNIS 360 LENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNIS Sbjct: 301 LENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNIS 360 Query: 361 ALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVN 420 ALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVN Sbjct: 361 ALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVN 420 Query: 421 HFDDCLNNFERNPQDIVWGREKGSVKIYKPKH 452 HFDDCLNNFERNPQDIVWGREKGSVKIYKPKH Sbjct: 421 HFDDCLNNFERNPQDIVWGREKGSVKIYKPKH 452 >gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Length = 1828 Score = 32.3 bits (72), Expect = 0.018, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 27/244 (11%) Query: 136 MITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETISTVLANNIS 195 +I+ +N T+ +I++++ HI ++ K I ++ IS V +S Sbjct: 1340 IISDATDSLNKVDERLHQTTNRITETTGHIDTVLAESSKLFEKKIKDLGEISRVSLLQMS 1399 Query: 196 HI-DKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIK-AIDL--------QKVNQILEN 245 I K +Q+ S DS + T L SLDK +DL + + + + Sbjct: 1400 EIVSKFDKNSQILIKSHDSLMKAQSETKL--SLDKDANNLVDLTSRLVSKSSEAQKFVMS 1457 Query: 246 IQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAFLE-NI 304 I V V+ +D + +TV V+ T + Q KID LS+ ++ S++T ++ N+ Sbjct: 1458 ILVDVKKIVEQADFLSDTV--VKNMTDSIQSSFIKIDGTLSNIETR--SRDTVRLIDHNL 1513 Query: 305 AD----STSNMRSSISAIREIT-----DQRQKIISTINTIENITSNLND-SSQKFAELMS 354 AD + + S+ ++E + RQKI STI IENI S L + S Q + Sbjct: 1514 ADIGNKTVKTIDSNFVTLKEKSYDLSNHMRQKICSTIPNIENIFSTLEEKSDQSMQVFLD 1573 Query: 355 KINN 358 +NN Sbjct: 1574 SLNN 1577 Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 145 NYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETISTVL--------ANNISH 196 + F +NA+ + + S +I+ + I K + +I ++ETIST L ++ ++H Sbjct: 742 DLFSNNAKRMEELLHSGSANIESELSAISKAMNKSIDDVETISTALKERCQELGSDLVNH 801 Query: 197 IDKMM 201 DK++ Sbjct: 802 SDKVL 806 Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 75/148 (50%), Gaps = 19/148 (12%) Query: 219 TITDLITSLDKMIKAIDLQ-KVNQILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEV 277 T+ D++ SL I LQ K + N++ +++N ++ D NT+ + T +E+ Sbjct: 417 TLNDVLQSL-----RISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLEN--RITAFLKEI 469 Query: 278 GQKIDHLLSDFSSKMKSKETSAFLENIADSTSNMRSSISAIREITDQRQKIISTI--NTI 335 + ++ ++DFSS K +N+++ SN++ +I ++ + + + I Sbjct: 470 VETFNNSITDFSSFYK--------DNLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNI 521 Query: 336 ENITSNLNDSSQKFAELMSKI-NNISAL 362 + I SNL+ + F +++SK NNIS + Sbjct: 522 QTIGSNLDKKTLLFEDILSKKQNNISQI 549 >gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62] Length = 1246 Score = 26.6 bits (57), Expect = 0.88, Method: Compositional matrix adjust. Identities = 9/17 (52%), Positives = 13/17 (76%) Query: 102 RTQGLAGITYIELSTLR 118 RT+GL G+TY ++ LR Sbjct: 330 RTEGLGGVTYDQIKQLR 346 >gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 26.6 bits (57), Expect = 1.0, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 23/35 (65%) Query: 27 WLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRFN 61 ++S +++ P+ + IRI GS D +S D ++R+N Sbjct: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266 >gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] Length = 480 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 21/36 (58%) Query: 148 ISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANI 183 I NAE + + S+R +QKI + +K + I+N+ Sbjct: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 >gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 673 Score = 24.3 bits (51), Expect = 4.8, Method: Compositional matrix adjust. Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 11/105 (10%) Query: 128 ATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETIS 187 A E+N++ + T + F + E+ ++ D I + +KP + IE I Sbjct: 295 AVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQD----IHSDVREQQKPAKPRLDLIEKIG 350 Query: 188 TVLANNISHIDKMMHTTQVTPHSSDS-------KNTFNTITDLIT 225 L N SH+ +M + ++S+ +N I DL+T Sbjct: 351 ERLGNLESHVANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVT 395 >gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 798 Score = 23.5 bits (49), Expect = 8.5, Method: Compositional matrix adjust. Identities = 9/25 (36%), Positives = 16/25 (64%) Query: 423 DDCLNNFERNPQDIVWGREKGSVKI 447 D L+N E+N +V+G+E+ K+ Sbjct: 465 DSVLSNLEKNLGTVVYGQEEAIKKL 489 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.314 0.129 0.350 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 266,727 Number of Sequences: 1233 Number of extensions: 10565 Number of successful extensions: 70 Number of sequences better than 100.0: 23 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 34 length of query: 452 length of database: 328,796 effective HSP length: 77 effective length of query: 375 effective length of database: 233,855 effective search space: 87695625 effective search space used: 87695625 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 40 (20.0 bits)