BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780140|ref|YP_003064553.1| putative ABC transporter,
substrate-binding protein [Candidatus Liberibacter asiaticus str.
psy62]
         (452 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 452

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/452 (100%), Positives = 452/452 (100%)

Query: 1   MESKNYYTSVGLFVVSILFFSFFSIYWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRF 60
           MESKNYYTSVGLFVVSILFFSFFSIYWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRF
Sbjct: 1   MESKNYYTSVGLFVVSILFFSFFSIYWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRF 60

Query: 61  NGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLRKE 120
           NGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLRKE
Sbjct: 61  NGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLRKE 120

Query: 121 KKTIFQIATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTI 180
           KKTIFQIATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTI
Sbjct: 121 KKTIFQIATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTI 180

Query: 181 ANIETISTVLANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVN 240
           ANIETISTVLANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVN
Sbjct: 181 ANIETISTVLANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVN 240

Query: 241 QILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAF 300
           QILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAF
Sbjct: 241 QILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAF 300

Query: 301 LENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNIS 360
           LENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNIS
Sbjct: 301 LENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNIS 360

Query: 361 ALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVN 420
           ALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVN
Sbjct: 361 ALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVN 420

Query: 421 HFDDCLNNFERNPQDIVWGREKGSVKIYKPKH 452
           HFDDCLNNFERNPQDIVWGREKGSVKIYKPKH
Sbjct: 421 HFDDCLNNFERNPQDIVWGREKGSVKIYKPKH 452


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1828

 Score = 32.3 bits (72), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 27/244 (11%)

Query: 136  MITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETISTVLANNIS 195
            +I+     +N        T+ +I++++ HI  ++    K     I ++  IS V    +S
Sbjct: 1340 IISDATDSLNKVDERLHQTTNRITETTGHIDTVLAESSKLFEKKIKDLGEISRVSLLQMS 1399

Query: 196  HI-DKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIK-AIDL--------QKVNQILEN 245
             I  K    +Q+   S DS     + T L  SLDK     +DL         +  + + +
Sbjct: 1400 EIVSKFDKNSQILIKSHDSLMKAQSETKL--SLDKDANNLVDLTSRLVSKSSEAQKFVMS 1457

Query: 246  IQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAFLE-NI 304
            I V     V+ +D + +TV  V+  T + Q    KID  LS+  ++  S++T   ++ N+
Sbjct: 1458 ILVDVKKIVEQADFLSDTV--VKNMTDSIQSSFIKIDGTLSNIETR--SRDTVRLIDHNL 1513

Query: 305  AD----STSNMRSSISAIREIT-----DQRQKIISTINTIENITSNLND-SSQKFAELMS 354
            AD    +   + S+   ++E +       RQKI STI  IENI S L + S Q     + 
Sbjct: 1514 ADIGNKTVKTIDSNFVTLKEKSYDLSNHMRQKICSTIPNIENIFSTLEEKSDQSMQVFLD 1573

Query: 355  KINN 358
             +NN
Sbjct: 1574 SLNN 1577



 Score = 25.8 bits (55), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 145 NYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETISTVL--------ANNISH 196
           + F +NA+   + +   S +I+  +  I K +  +I ++ETIST L        ++ ++H
Sbjct: 742 DLFSNNAKRMEELLHSGSANIESELSAISKAMNKSIDDVETISTALKERCQELGSDLVNH 801

Query: 197 IDKMM 201
            DK++
Sbjct: 802 SDKVL 806



 Score = 25.4 bits (54), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 75/148 (50%), Gaps = 19/148 (12%)

Query: 219 TITDLITSLDKMIKAIDLQ-KVNQILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEV 277
           T+ D++ SL      I LQ K +    N++ +++N ++  D   NT+ +    T   +E+
Sbjct: 417 TLNDVLQSL-----RISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLEN--RITAFLKEI 469

Query: 278 GQKIDHLLSDFSSKMKSKETSAFLENIADSTSNMRSSISAIREITDQRQKIISTI--NTI 335
            +  ++ ++DFSS  K        +N+++  SN++ +I  ++         +  +  + I
Sbjct: 470 VETFNNSITDFSSFYK--------DNLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNI 521

Query: 336 ENITSNLNDSSQKFAELMSKI-NNISAL 362
           + I SNL+  +  F +++SK  NNIS +
Sbjct: 522 QTIGSNLDKKTLLFEDILSKKQNNISQI 549


>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1246

 Score = 26.6 bits (57), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 102 RTQGLAGITYIELSTLR 118
           RT+GL G+TY ++  LR
Sbjct: 330 RTEGLGGVTYDQIKQLR 346


>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 26.6 bits (57), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 27  WLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRFN 61
           ++S  +++  P+ +  IRI GS D +S D ++R+N
Sbjct: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266


>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 480

 Score = 25.0 bits (53), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 148 ISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANI 183
           I NAE   +  + S+R +QKI  + +K +   I+N+
Sbjct: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163


>gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 673

 Score = 24.3 bits (51), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 128 ATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETIS 187
           A E+N++   + T   +  F  + E+   ++ D    I   +   +KP    +  IE I 
Sbjct: 295 AVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQD----IHSDVREQQKPAKPRLDLIEKIG 350

Query: 188 TVLANNISHIDKMMHTTQVTPHSSDS-------KNTFNTITDLIT 225
             L N  SH+  +M   +   ++S+        +N    I DL+T
Sbjct: 351 ERLGNLESHVANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVT 395


>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 798

 Score = 23.5 bits (49), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 423 DDCLNNFERNPQDIVWGREKGSVKI 447
           D  L+N E+N   +V+G+E+   K+
Sbjct: 465 DSVLSNLEKNLGTVVYGQEEAIKKL 489


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.129    0.350 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 266,727
Number of Sequences: 1233
Number of extensions: 10565
Number of successful extensions: 70
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 34
length of query: 452
length of database: 328,796
effective HSP length: 77
effective length of query: 375
effective length of database: 233,855
effective search space: 87695625
effective search space used: 87695625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 40 (20.0 bits)