Query         gi|254780141|ref|YP_003064554.1| putative ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 208
No_of_seqs    115 out of 533
Neff          8.8 
Searched_HMMs 23785
Date          Sun May 22 23:58:57 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780141.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2iqi_A Hypothetical protein XC 100.0 3.4E-36 1.4E-40  222.1  22.5  171   32-202     6-180 (192)
  2 3omb_A Extracellular solute-bi  76.2    0.47   2E-05   23.7   0.2   28    5-32      2-29  (535)
  3 2jxp_A Putative lipoprotein B;  18.9      38  0.0016   12.9  12.4  103   95-200    24-137 (155)
  4 1uuz_A IVY, inhibitor of verte  17.6      35  0.0015   13.1   1.0   26   84-109   100-125 (137)
  5 3c75_A Amicyanin; copper prote  15.9      45  0.0019   12.5   2.2   19    8-26      1-19  (132)
  6 1z1n_X Sixteen heme cytochrome  15.0      47   0.002   12.4   1.1   26   50-75     38-63  (560)
  7 1fft_B Ubiquinol oxidase; elec  12.8      35  0.0015   13.1   0.0   26    4-31      2-27  (315)
  8 1w7f_A Beta-lactamase; hydrola  11.7      40  0.0017   12.8   0.0   29    1-31      1-29  (307)
  9 2v25_A Major cell-binding fact  11.6      37  0.0016   12.9  -0.2   26  174-201   230-255 (259)
 10 2jep_A Xyloglucanase; family 5  11.5      43  0.0018   12.6   0.1   33    5-37      2-34  (395)

No 1  
>2iqi_A Hypothetical protein XCC0632; structural genomics, PSI-2, protein structure initiative; 2.70A {Xanthomonas campestris PV} SCOP: c.51.6.2
Probab=100.00  E-value=3.4e-36  Score=222.12  Aligned_cols=171  Identities=26%  Similarity=0.512  Sum_probs=157.3

Q ss_pred             CCCCCEEEECCCCCCCCCC-CCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             9998607970788876666-666620898153012000686378994697699814660125689999999999997316
Q gi|254780141|r   32 HNNPVNIYDLTESTKYDES-VQRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPRMIQLKLIANFENNG  110 (208)
Q Consensus        32 ~~~p~~~Y~L~~~~~~~~~-~~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~~~p~~~l~~~L~~~L~~~~  110 (208)
                      ..+|.++|.|+++....++ .+...+|.|.+|.++++||+++|+|+.++++++++.+|||+++|++||++.|.++|++.+
T Consensus         6 ~~~P~~~y~l~~~~~~~~~~p~~~~~l~V~~p~~p~~ld~~~Iv~~~~~~~l~~~~~~rWa~~~~~~l~~~L~~~L~~~~   85 (192)
T 2iqi_A            6 DQKPATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSG   85 (192)
T ss_dssp             ----CEEECCCCCCCCCTTSCCCCSEEEECCCBCCTTTSSSSCEEESSTTCCEECTTEEESSCHHHHHHHHHHHHHHTTS
T ss_pred             CCCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             99996524369877899988987436998773411232677779993898787735782103778999999999999609


Q ss_pred             CCEEEECCCCCCCCCEEEEEEEEEEEEECCC---CEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             9406503767778835999999999963587---4799999999994578827789999999952779988999999999
Q gi|254780141|r  111 KISTVVKPNQGIYADYQIISAIRSFEINIDR---HCAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRA  187 (208)
Q Consensus       111 ~~~~v~~~~~~~~~~~~L~~~I~~f~~~~~~---~~a~i~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~Al~~A  187 (208)
                      .+..|.+++++.++||+|+++|++|++++++   ..+++.++|.+++.++++++++++|+.++|+.++++.++|+||++|
T Consensus        86 ~~~~v~~~~~~~~~d~~L~~~I~~F~~~~~~~~~~~a~~~~~~~l~~~~~~~v~~~~~f~~~~p~~~~~~~~lV~A~~~A  165 (192)
T 2iqi_A           86 KIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQA  165 (192)
T ss_dssp             SCSEEECC-----CCEEEEEEEEEEEEECTTSSSCEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHH
T ss_conf             97357568888887769999999988760688752799999888512789817899999999767889989999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999973
Q gi|254780141|r  188 FSRISSEIIDWTLSS  202 (208)
Q Consensus       188 l~~l~~~ia~w~~~~  202 (208)
                      +++++++|++|+++.
T Consensus       166 l~~l~~~ia~w~~~~  180 (192)
T 2iqi_A          166 LTQVTTELVGWTLIT  180 (192)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999987


No 2  
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=76.22  E-value=0.47  Score=23.67  Aligned_cols=28  Identities=29%  Similarity=0.183  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             2477789999999999999986304889
Q gi|254780141|r    5 LNKIIKKKIISCSLAVLLCTSLSSCFFH   32 (208)
Q Consensus         5 ~~~~~r~~~~~~~l~~~~~~~l~~c~~~   32 (208)
                      |+|...+++.+++++++++++|+||++.
T Consensus         2 Mkrr~~~~~~a~~~~~~~~~~LaaCg~~   29 (535)
T 3omb_A            2 MRRQTMVKAGAVACAVALLGSLSACGGS   29 (535)
T ss_dssp             ----------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             7777999999999999999999700899


No 3  
>2jxp_A Putative lipoprotein B; uncharacterized lipoprotein B, structure, northeast structural genomics consortium, NESG, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=18.87  E-value=38  Score=12.91  Aligned_cols=103  Identities=12%  Similarity=0.113  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEEEEEEEC-----CCCE----EEEEEEEEEEECCCCCEEEEEE
Q ss_conf             999999999999731694065037677788359999999999635-----8747----9999999999457882778999
Q gi|254780141|r   95 PRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINI-----DRHC----AIITMSLKIINAHDNSLVGQKV  165 (208)
Q Consensus        95 ~~~l~~~L~~~L~~~~~~~~v~~~~~~~~~~~~L~~~I~~f~~~~-----~~~~----a~i~~~~~l~~~~~~~~~~~~~  165 (208)
                      ...+.+.|.+.|...+....+-.   +..+++.|.+.-..++-..     .|..    -...+.+.+...++..++....
T Consensus        24 ~~~~~~~l~~~L~~~~~~~v~~~---~~~A~~~L~I~~~~~~rr~~Sv~s~g~~~EyeL~~~v~~~v~~~~g~~l~~~~~  100 (155)
T 2jxp_A           24 GLTIGSDLERVISTHTRAKVVNK---AEKSEAIIQIVHAIREKRILSLSESGRVREFELVYRVAARLLDAHNAELASLQE  100 (155)
T ss_dssp             CCHHHHHHHHHHHHHSSCEEESS---GGGCSEEEEEEEEEEEEEECCEETTTEECEEEEEEEEEEEEEETTSCEEECCCE
T ss_pred             CCHHHHHHHHHHHHCCCEEEECC---CCCCCEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEECCCCCEECCCEE
T ss_conf             84899999999986598497437---666768999975142179997747884444899999999999599977427668


Q ss_pred             EEEEEECCCCCHHHHHH--HHHHHHHHHHHHHHHHHH
Q ss_conf             99999527799889999--999999999999999999
Q gi|254780141|r  166 FHVEEKLEKDNKLHFIQ--SLNRAFSRISSEIIDWTL  200 (208)
Q Consensus       166 f~~~~~~~~~~~~~~v~--Al~~Al~~l~~~ia~w~~  200 (208)
                      +..+....-+....+.+  --+...+++-++++..++
T Consensus       101 i~~~R~y~~d~~~~la~~~Ee~~l~~eM~~~la~qIl  137 (155)
T 2jxp_A          101 IRLTRILPFLDAQELAKAAEEEMLYKDMQKDAVQQIL  137 (155)
T ss_dssp             EEEEEEEECCSSCHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999997349678751599999999999999999999


No 4  
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1
Probab=17.58  E-value=35  Score=13.11  Aligned_cols=26  Identities=15%  Similarity=0.337  Sum_probs=22.1

Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             81466012568999999999999731
Q gi|254780141|r   84 YLIGSQWSDKLPRMIQLKLIANFENN  109 (208)
Q Consensus        84 ~~~~~rW~~~p~~~l~~~L~~~L~~~  109 (208)
                      .+...||...|++.++..|.+.|++.
T Consensus       100 ~~a~y~wLG~Pde~mqalL~~ql~~d  125 (137)
T 1uuz_A          100 KYATYRWYGEPSRQVRELLMKQLESD  125 (137)
T ss_dssp             GTCEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf             00377743799899999999998649


No 5  
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=15.89  E-value=45  Score=12.49  Aligned_cols=19  Identities=16%  Similarity=0.291  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             7789999999999999986
Q gi|254780141|r    8 IIKKKIISCSLAVLLCTSL   26 (208)
Q Consensus         8 ~~r~~~~~~~l~~~~~~~l   26 (208)
                      |++++.+..+++++.+..+
T Consensus         1 ~~~~~~~~~aia~~a~~a~   19 (132)
T 3c75_A            1 MISAKTLRPAIAAIALFAI   19 (132)
T ss_dssp             -------------------
T ss_pred             CCCHHHHHHHHHHHHHHHH
T ss_conf             9542359999999999985


No 6  
>1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC; 2.10A {Desulfovibrio gigas}
Probab=14.98  E-value=47  Score=12.39  Aligned_cols=26  Identities=8%  Similarity=0.116  Sum_probs=11.8

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCEEEE
Q ss_conf             66666208981530120006863789
Q gi|254780141|r   50 SVQRHIQLIITEPITEKILNSEDIIV   75 (208)
Q Consensus        50 ~~~~~~~i~v~~~~~~~~l~~~~Iv~   75 (208)
                      ..+++-.|.++.....+.|+.+-+++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~v~f   63 (560)
T 1z1n_X           38 AEPKVDAIVIDTAAVFGKLEQPGVVF   63 (560)
T ss_dssp             --CCTTEECCCGGGGGSSCSSCCBCE
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCEEC
T ss_conf             78887756620234567656795214


No 7  
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=12.80  E-value=35  Score=13.10  Aligned_cols=26  Identities=23%  Similarity=0.117  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             0247778999999999999998630488
Q gi|254780141|r    4 KLNKIIKKKIISCSLAVLLCTSLSSCFF   31 (208)
Q Consensus         4 ~~~~~~r~~~~~~~l~~~~~~~l~~c~~   31 (208)
                      |+.|..|  .+....+++..+.|+||..
T Consensus         2 ~~~~~~r--~l~~l~ll~~~~lLsGC~~   27 (315)
T 1fft_B            2 RLRKYNK--SLGWLSLFAGTVLLSGCNS   27 (315)
T ss_dssp             ---------------------------C
T ss_pred             CCCHHHH--HHHHHHHHHHHHHHHHCCC
T ss_conf             8603678--9999999999999965765


No 8  
>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
Probab=11.75  E-value=40  Score=12.80  Aligned_cols=29  Identities=21%  Similarity=0.383  Sum_probs=12.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9740247778999999999999998630488
Q gi|254780141|r    1 MDKKLNKIIKKKIISCSLAVLLCTSLSSCFF   31 (208)
Q Consensus         1 m~~~~~~~~r~~~~~~~l~~~~~~~l~~c~~   31 (208)
                      |++.-.+|.-++.+.  ++++.+..+++|+.
T Consensus         1 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~   29 (307)
T 1w7f_A            1 MKLWFSTLKLKKAAA--VLLFSCVALAGCAN   29 (307)
T ss_dssp             -------------------------------
T ss_pred             CCHHHHHHHHHHHHH--HHHHHHHHHHHHCC
T ss_conf             916999999999999--99999999997223


No 9  
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=11.65  E-value=37  Score=12.95  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=18.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7998899999999999999999999997
Q gi|254780141|r  174 KDNKLHFIQSLNRAFSRISSEIIDWTLS  201 (208)
Q Consensus       174 ~~~~~~~v~Al~~Al~~l~~~ia~w~~~  201 (208)
                      .+++ .+.+.+|+++.++..++. ++.+
T Consensus       230 k~~~-~l~~~ln~~l~~~~g~~~-~I~~  255 (259)
T 2v25_A          230 KDDP-AFAKYVDDFVKEHKNEID-ALAK  255 (259)
T ss_dssp             TTCH-HHHHHHHHHHHHTHHHHH-HHHH
T ss_pred             CCCH-HHHHHHHHHHHHHHHHHH-HHHH
T ss_conf             8999-999999999998247999-9998


No 10 
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A*
Probab=11.48  E-value=43  Score=12.57  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             247778999999999999998630488999860
Q gi|254780141|r    5 LNKIIKKKIISCSLAVLLCTSLSSCFFHNNPVN   37 (208)
Q Consensus         5 ~~~~~r~~~~~~~l~~~~~~~l~~c~~~~~p~~   37 (208)
                      |++..+..+..++++++++.++++|+.+....+
T Consensus         2 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   34 (395)
T 2jep_A            2 FKKWKKFGISSLALVLVAAVAFTGWSAKASAAD   34 (395)
T ss_dssp             -------------------------------CC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             247899999999999999998426654455689


Done!