Query gi|254780141|ref|YP_003064554.1| putative ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 208 No_of_seqs 115 out of 533 Neff 8.8 Searched_HMMs 23785 Date Sun May 22 23:58:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780141.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2iqi_A Hypothetical protein XC 100.0 3.4E-36 1.4E-40 222.1 22.5 171 32-202 6-180 (192) 2 3omb_A Extracellular solute-bi 76.2 0.47 2E-05 23.7 0.2 28 5-32 2-29 (535) 3 2jxp_A Putative lipoprotein B; 18.9 38 0.0016 12.9 12.4 103 95-200 24-137 (155) 4 1uuz_A IVY, inhibitor of verte 17.6 35 0.0015 13.1 1.0 26 84-109 100-125 (137) 5 3c75_A Amicyanin; copper prote 15.9 45 0.0019 12.5 2.2 19 8-26 1-19 (132) 6 1z1n_X Sixteen heme cytochrome 15.0 47 0.002 12.4 1.1 26 50-75 38-63 (560) 7 1fft_B Ubiquinol oxidase; elec 12.8 35 0.0015 13.1 0.0 26 4-31 2-27 (315) 8 1w7f_A Beta-lactamase; hydrola 11.7 40 0.0017 12.8 0.0 29 1-31 1-29 (307) 9 2v25_A Major cell-binding fact 11.6 37 0.0016 12.9 -0.2 26 174-201 230-255 (259) 10 2jep_A Xyloglucanase; family 5 11.5 43 0.0018 12.6 0.1 33 5-37 2-34 (395) No 1 >2iqi_A Hypothetical protein XCC0632; structural genomics, PSI-2, protein structure initiative; 2.70A {Xanthomonas campestris PV} SCOP: c.51.6.2 Probab=100.00 E-value=3.4e-36 Score=222.12 Aligned_cols=171 Identities=26% Similarity=0.512 Sum_probs=157.3 Q ss_pred CCCCCEEEECCCCCCCCCC-CCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 9998607970788876666-666620898153012000686378994697699814660125689999999999997316 Q gi|254780141|r 32 HNNPVNIYDLTESTKYDES-VQRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPRMIQLKLIANFENNG 110 (208) Q Consensus 32 ~~~p~~~Y~L~~~~~~~~~-~~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~~~p~~~l~~~L~~~L~~~~ 110 (208) ..+|.++|.|+++....++ .+...+|.|.+|.++++||+++|+|+.++++++++.+|||+++|++||++.|.++|++.+ T Consensus 6 ~~~P~~~y~l~~~~~~~~~~p~~~~~l~V~~p~~p~~ld~~~Iv~~~~~~~l~~~~~~rWa~~~~~~l~~~L~~~L~~~~ 85 (192) T 2iqi_A 6 DQKPATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSG 85 (192) T ss_dssp ----CEEECCCCCCCCCTTSCCCCSEEEECCCBCCTTTSSSSCEEESSTTCCEECTTEEESSCHHHHHHHHHHHHHHTTS T ss_pred CCCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHC T ss_conf 99996524369877899988987436998773411232677779993898787735782103778999999999999609 Q ss_pred CCEEEECCCCCCCCCEEEEEEEEEEEEECCC---CEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 9406503767778835999999999963587---4799999999994578827789999999952779988999999999 Q gi|254780141|r 111 KISTVVKPNQGIYADYQIISAIRSFEINIDR---HCAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRA 187 (208) Q Consensus 111 ~~~~v~~~~~~~~~~~~L~~~I~~f~~~~~~---~~a~i~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~Al~~A 187 (208) .+..|.+++++.++||+|+++|++|++++++ ..+++.++|.+++.++++++++++|+.++|+.++++.++|+||++| T Consensus 86 ~~~~v~~~~~~~~~d~~L~~~I~~F~~~~~~~~~~~a~~~~~~~l~~~~~~~v~~~~~f~~~~p~~~~~~~~lV~A~~~A 165 (192) T 2iqi_A 86 KIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQA 165 (192) T ss_dssp SCSEEECC-----CCEEEEEEEEEEEEECTTSSSCEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSSSHHHHHHHHHHH T ss_pred CCCEEECCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHH T ss_conf 97357568888887769999999988760688752799999888512789817899999999767889989999999999 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999973 Q gi|254780141|r 188 FSRISSEIIDWTLSS 202 (208) Q Consensus 188 l~~l~~~ia~w~~~~ 202 (208) +++++++|++|+++. T Consensus 166 l~~l~~~ia~w~~~~ 180 (192) T 2iqi_A 166 LTQVTTELVGWTLIT 180 (192) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999987 No 2 >3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp} Probab=76.22 E-value=0.47 Score=23.67 Aligned_cols=28 Identities=29% Similarity=0.183 Sum_probs=15.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 2477789999999999999986304889 Q gi|254780141|r 5 LNKIIKKKIISCSLAVLLCTSLSSCFFH 32 (208) Q Consensus 5 ~~~~~r~~~~~~~l~~~~~~~l~~c~~~ 32 (208) |+|...+++.+++++++++++|+||++. T Consensus 2 Mkrr~~~~~~a~~~~~~~~~~LaaCg~~ 29 (535) T 3omb_A 2 MRRQTMVKAGAVACAVALLGSLSACGGS 29 (535) T ss_dssp ---------------------------- T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 7777999999999999999999700899 No 3 >2jxp_A Putative lipoprotein B; uncharacterized lipoprotein B, structure, northeast structural genomics consortium, NESG, PSI-2; NMR {Nitrosomonas europaea atcc 19718} Probab=18.87 E-value=38 Score=12.91 Aligned_cols=103 Identities=12% Similarity=0.113 Sum_probs=52.1 Q ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEEEEEEEC-----CCCE----EEEEEEEEEEECCCCCEEEEEE Q ss_conf 999999999999731694065037677788359999999999635-----8747----9999999999457882778999 Q gi|254780141|r 95 PRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINI-----DRHC----AIITMSLKIINAHDNSLVGQKV 165 (208) Q Consensus 95 ~~~l~~~L~~~L~~~~~~~~v~~~~~~~~~~~~L~~~I~~f~~~~-----~~~~----a~i~~~~~l~~~~~~~~~~~~~ 165 (208) ...+.+.|.+.|...+....+-. +..+++.|.+.-..++-.. .|.. -...+.+.+...++..++.... T Consensus 24 ~~~~~~~l~~~L~~~~~~~v~~~---~~~A~~~L~I~~~~~~rr~~Sv~s~g~~~EyeL~~~v~~~v~~~~g~~l~~~~~ 100 (155) T 2jxp_A 24 GLTIGSDLERVISTHTRAKVVNK---AEKSEAIIQIVHAIREKRILSLSESGRVREFELVYRVAARLLDAHNAELASLQE 100 (155) T ss_dssp CCHHHHHHHHHHHHHSSCEEESS---GGGCSEEEEEEEEEEEEEECCEETTTEECEEEEEEEEEEEEEETTSCEEECCCE T ss_pred CCHHHHHHHHHHHHCCCEEEECC---CCCCCEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEECCCCCEECCCEE T ss_conf 84899999999986598497437---666768999975142179997747884444899999999999599977427668 Q ss_pred EEEEEECCCCCHHHHHH--HHHHHHHHHHHHHHHHHH Q ss_conf 99999527799889999--999999999999999999 Q gi|254780141|r 166 FHVEEKLEKDNKLHFIQ--SLNRAFSRISSEIIDWTL 200 (208) Q Consensus 166 f~~~~~~~~~~~~~~v~--Al~~Al~~l~~~ia~w~~ 200 (208) +..+....-+....+.+ --+...+++-++++..++ T Consensus 101 i~~~R~y~~d~~~~la~~~Ee~~l~~eM~~~la~qIl 137 (155) T 2jxp_A 101 IRLTRILPFLDAQELAKAAEEEMLYKDMQKDAVQQIL 137 (155) T ss_dssp EEEEEEEECCSSCHHHHTTHHHHHHHHHHHHHHHHHH T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999997349678751599999999999999999999 No 4 >1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1 Probab=17.58 E-value=35 Score=13.11 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=22.1 Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 81466012568999999999999731 Q gi|254780141|r 84 YLIGSQWSDKLPRMIQLKLIANFENN 109 (208) Q Consensus 84 ~~~~~rW~~~p~~~l~~~L~~~L~~~ 109 (208) .+...||...|++.++..|.+.|++. T Consensus 100 ~~a~y~wLG~Pde~mqalL~~ql~~d 125 (137) T 1uuz_A 100 KYATYRWYGEPSRQVRELLMKQLESD 125 (137) T ss_dssp GTCEEEEESCCCHHHHHHHHHHHHTS T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHC T ss_conf 00377743799899999999998649 No 5 >3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Probab=15.89 E-value=45 Score=12.49 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 7789999999999999986 Q gi|254780141|r 8 IIKKKIISCSLAVLLCTSL 26 (208) Q Consensus 8 ~~r~~~~~~~l~~~~~~~l 26 (208) |++++.+..+++++.+..+ T Consensus 1 ~~~~~~~~~aia~~a~~a~ 19 (132) T 3c75_A 1 MISAKTLRPAIAAIALFAI 19 (132) T ss_dssp ------------------- T ss_pred CCCHHHHHHHHHHHHHHHH T ss_conf 9542359999999999985 No 6 >1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC; 2.10A {Desulfovibrio gigas} Probab=14.98 E-value=47 Score=12.39 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=11.8 Q ss_pred CCCCCCCEEEECCCCCCCCCCCEEEE Q ss_conf 66666208981530120006863789 Q gi|254780141|r 50 SVQRHIQLIITEPITEKILNSEDIIV 75 (208) Q Consensus 50 ~~~~~~~i~v~~~~~~~~l~~~~Iv~ 75 (208) ..+++-.|.++.....+.|+.+-+++ T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~v~f 63 (560) T 1z1n_X 38 AEPKVDAIVIDTAAVFGKLEQPGVVF 63 (560) T ss_dssp --CCTTEECCCGGGGGSSCSSCCBCE T ss_pred CCCCCCEEEEECCCCCCCCCCCCEEC T ss_conf 78887756620234567656795214 No 7 >1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1 Probab=12.80 E-value=35 Score=13.10 Aligned_cols=26 Identities=23% Similarity=0.117 Sum_probs=11.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 0247778999999999999998630488 Q gi|254780141|r 4 KLNKIIKKKIISCSLAVLLCTSLSSCFF 31 (208) Q Consensus 4 ~~~~~~r~~~~~~~l~~~~~~~l~~c~~ 31 (208) |+.|..| .+....+++..+.|+||.. T Consensus 2 ~~~~~~r--~l~~l~ll~~~~lLsGC~~ 27 (315) T 1fft_B 2 RLRKYNK--SLGWLSLFAGTVLLSGCNS 27 (315) T ss_dssp ---------------------------C T ss_pred CCCHHHH--HHHHHHHHHHHHHHHHCCC T ss_conf 8603678--9999999999999965765 No 8 >1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis} Probab=11.75 E-value=40 Score=12.80 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=12.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9740247778999999999999998630488 Q gi|254780141|r 1 MDKKLNKIIKKKIISCSLAVLLCTSLSSCFF 31 (208) Q Consensus 1 m~~~~~~~~r~~~~~~~l~~~~~~~l~~c~~ 31 (208) |++.-.+|.-++.+. ++++.+..+++|+. T Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 29 (307) T 1w7f_A 1 MKLWFSTLKLKKAAA--VLLFSCVALAGCAN 29 (307) T ss_dssp ------------------------------- T ss_pred CCHHHHHHHHHHHHH--HHHHHHHHHHHHCC T ss_conf 916999999999999--99999999997223 No 9 >2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Probab=11.65 E-value=37 Score=12.95 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=18.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7998899999999999999999999997 Q gi|254780141|r 174 KDNKLHFIQSLNRAFSRISSEIIDWTLS 201 (208) Q Consensus 174 ~~~~~~~v~Al~~Al~~l~~~ia~w~~~ 201 (208) .+++ .+.+.+|+++.++..++. ++.+ T Consensus 230 k~~~-~l~~~ln~~l~~~~g~~~-~I~~ 255 (259) T 2v25_A 230 KDDP-AFAKYVDDFVKEHKNEID-ALAK 255 (259) T ss_dssp TTCH-HHHHHHHHHHHHTHHHHH-HHHH T ss_pred CCCH-HHHHHHHHHHHHHHHHHH-HHHH T ss_conf 8999-999999999998247999-9998 No 10 >2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A* Probab=11.48 E-value=43 Score=12.57 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE Q ss_conf 247778999999999999998630488999860 Q gi|254780141|r 5 LNKIIKKKIISCSLAVLLCTSLSSCFFHNNPVN 37 (208) Q Consensus 5 ~~~~~r~~~~~~~l~~~~~~~l~~c~~~~~p~~ 37 (208) |++..+..+..++++++++.++++|+.+....+ T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (395) T 2jep_A 2 FKKWKKFGISSLALVLVAAVAFTGWSAKASAAD 34 (395) T ss_dssp -------------------------------CC T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 247899999999999999998426654455689 Done!