Query gi|254780141|ref|YP_003064554.1| putative ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 208
No_of_seqs 115 out of 533
Neff 8.8
Searched_HMMs 13730
Date Mon May 23 06:18:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780141.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iqia1 c.51.6.2 (A:32-209) Hy 100.0 2.1E-34 1.5E-38 210.7 22.4 167 37-203 2-172 (178)
2 d1uuza_ d.233.1.1 (A:) Inhibit 21.3 15 0.0011 13.9 1.0 27 83-109 99-125 (130)
3 d1utya_ b.147.1.1 (A:) Nonstru 13.5 30 0.0022 12.1 2.8 55 37-92 26-86 (153)
4 d2hqsa2 c.51.2.1 (A:29-162) To 13.4 30 0.0022 12.1 10.1 69 95-169 24-110 (134)
5 d2d69a1 c.1.14.1 (A:134-424) R 4.8 75 0.0055 9.9 4.0 16 174-189 246-261 (291)
6 d1n8pa_ c.67.1.3 (A:) Cystathi 4.5 80 0.0058 9.7 0.3 25 168-192 368-392 (393)
7 d1geha1 c.1.14.1 (A:137-443) R 4.0 93 0.0068 9.3 3.1 18 174-191 262-279 (307)
8 d5ruba1 c.1.14.1 (A:138-457) R 3.8 1E+02 0.0073 9.2 3.3 17 174-190 263-279 (320)
9 d1ibja_ c.67.1.3 (A:) Cystathi 2.9 1.4E+02 0.0099 8.4 1.1 23 168-190 355-377 (380)
10 d1gpqa_ d.233.1.1 (A:) Inhibit 2.8 1.5E+02 0.011 8.2 0.9 25 85-109 90-121 (127)
No 1
>d2iqia1 c.51.6.2 (A:32-209) Hypothetical protein XCC0632 {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=100.00 E-value=2.1e-34 Score=210.70 Aligned_cols=167 Identities=26% Similarity=0.500 Sum_probs=154.2
Q ss_pred EEEECCCCCCCCCCC-CCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 079707888766666-6662089815301200068637899469769981466012568999999999999731694065
Q gi|254780141|r 37 NIYDLTESTKYDESV-QRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPRMIQLKLIANFENNGKISTV 115 (208)
Q Consensus 37 ~~Y~L~~~~~~~~~~-~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~~~p~~~l~~~L~~~L~~~~~~~~v 115 (208)
++|.+.+.....+.. +...+|.|.+|.++++||+++|+|+.+++++.+|.++||+++|++||++.|.++|++++.+..|
T Consensus 2 ~~~~p~~~~~~~p~~p~~~~~l~V~~~~~~~~ld~~~Iv~~~~~~~l~~~~~~rWa~~~~~~l~~~L~~~L~~~~~~~~V 81 (178)
T d2iqia1 2 TIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAV 81 (178)
T ss_dssp EEECCCCCCCCCTTSCCCCSEEEECCCBCCTTTSSSSCEEESSTTCCEECTTEEESSCHHHHHHHHHHHHHHTTSSCSEE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 63357988888998997616999877346111077756999589778451378222687899999999999960997458
Q ss_pred ECCCCCCCCCEEEEEEEEEEEEECCCC---EEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 037677788359999999999635874---79999999999457882778999999995277998899999999999999
Q gi|254780141|r 116 VKPNQGIYADYQIISAIRSFEINIDRH---CAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRIS 192 (208)
Q Consensus 116 ~~~~~~~~~~~~L~~~I~~f~~~~~~~---~a~i~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~Al~~Al~~l~ 192 (208)
.+++++..+||+|+++|++|+++++++ .+++.++|.+++.++++++++++|..++|+.+++++++|+||++|+++++
T Consensus 82 ~~~~~~~~~d~~L~~~i~~F~~~~~~~~~~~a~~~~~~~l~~~~~~~v~~~~~f~~~~p~~~~~~~~lV~A~~~Al~~l~ 161 (178)
T d2iqia1 82 ARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVT 161 (178)
T ss_dssp ECC-----CCEEEEEEEEEEEEECTTSSSCEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSSSHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 66888888776999999998888458886289999999982178981788999999974788998999999999999999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999739
Q gi|254780141|r 193 SEIIDWTLSSL 203 (208)
Q Consensus 193 ~~ia~w~~~~~ 203 (208)
++|++|+++..
T Consensus 162 ~~ia~W~~~~~ 172 (178)
T d2iqia1 162 TELVGWTLITG 172 (178)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999975
No 2
>d1uuza_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.32 E-value=15 Score=13.86 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=22.9
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 981466012568999999999999731
Q gi|254780141|r 83 QYLIGSQWSDKLPRMIQLKLIANFENN 109 (208)
Q Consensus 83 ~~~~~~rW~~~p~~~l~~~L~~~L~~~ 109 (208)
..+...||...|++.++..|.+.|.+.
T Consensus 99 s~~a~y~wLG~Pd~~mqalL~~ql~~d 125 (130)
T d1uuza_ 99 SKYATYRWYGEPSRQVRELLMKQLESD 125 (130)
T ss_dssp GGTCEEEEESCCCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 500267742799989999999999758
No 3
>d1utya_ b.147.1.1 (A:) Nonstructural protein NS2 {Bluetongue virus [TaxId: 40051]}
Probab=13.50 E-value=30 Score=12.12 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=35.3
Q ss_pred EEEECCCC-----CCCCCCCCCCCCEEEECCCCCCCCCCCEEEEE-ECCCEEEEECCCCCCC
Q ss_conf 07970788-----87666666662089815301200068637899-4697699814660125
Q gi|254780141|r 37 NIYDLTES-----TKYDESVQRHIQLIITEPITEKILNSEDIIVR-SSPIEIQYLIGSQWSD 92 (208)
Q Consensus 37 ~~Y~L~~~-----~~~~~~~~~~~~i~v~~~~~~~~l~~~~Iv~~-~~~~~~~~~~~~rW~~ 92 (208)
.||..-.. .....+.++...|.|..+-+-...|++++..- -+..- -....+||.+
T Consensus 26 ~Y~~vKiGr~~~~~~v~~P~Pk~yVleI~~~gA~riqDg~d~~slmIs~~G-vE~t~eRWee 86 (153)
T d1utya_ 26 PYCQIKIGRVVAFKPVKNPEPKGYVLNVPGPGAYRIQDGQDIISLMLTPHG-VEATTERWEE 86 (153)
T ss_dssp SEEEEEESSSCEEEEESSCCTTCEEEECSSSEEEEEEETTEEEEEEECSSC-EEEESSCCTT
T ss_pred CEEEEEECCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCC-EEEECCCHHC
T ss_conf 639999645898636189999859999368856998738816999980654-2212030010
No 4
>d2hqsa2 c.51.2.1 (A:29-162) TolB, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.39 E-value=30 Score=12.10 Aligned_cols=69 Identities=16% Similarity=0.342 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHCCCEEEECCCC----------------CCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEC--C
Q ss_conf 99999999999973169406503767----------------77883599999999996358747999999999945--7
Q gi|254780141|r 95 PRMIQLKLIANFENNGKISTVVKPNQ----------------GIYADYQIISAIRSFEINIDRHCAIITMSLKIINA--H 156 (208)
Q Consensus 95 ~~~l~~~L~~~L~~~~~~~~v~~~~~----------------~~~~~~~L~~~I~~f~~~~~~~~a~i~~~~~l~~~--~ 156 (208)
++.+.+.+..+|.++|-|..+.+... ....++.+.+.|+. ..++ . +.++++|.+- .
T Consensus 24 ~~~i~~iI~~DL~~SG~F~~i~~~~~~~~p~~~~~i~~~~W~~lga~~lv~G~v~~---~~~g-~--~~v~~~L~DV~~~ 97 (134)
T d2hqsa2 24 PEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTP---NPDG-S--YNVAYQLVDTGGA 97 (134)
T ss_dssp SSCHHHHHHHHHHHTTSEEECCGGGCSCCCSSGGGCCHHHHHTTTCCEEEEEEEEE---CTTS-C--EEEEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHCCCEECCCHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEE---CCCC-E--EEEEEEEEEECCC
T ss_conf 68999999998985887131484442237764356676888634875799987775---2673-6--9999999974044
Q ss_pred CCCEEEEEEEEEE
Q ss_conf 8827789999999
Q gi|254780141|r 157 DNSLVGQKVFHVE 169 (208)
Q Consensus 157 ~~~~~~~~~f~~~ 169 (208)
.++++..+.|...
T Consensus 98 ~~~~l~~~~~~~~ 110 (134)
T d2hqsa2 98 PGTVLAQNSYKVN 110 (134)
T ss_dssp TTCEEEEEEEEEC
T ss_pred CCCEEEEEEEECC
T ss_conf 4416511255078
No 5
>d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.75 E-value=75 Score=9.88 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 7998899999999999
Q gi|254780141|r 174 KDNKLHFIQSLNRAFS 189 (208)
Q Consensus 174 ~~~~~~~v~Al~~Al~ 189 (208)
.+++.+.++|+.+|++
T Consensus 246 P~G~~aGa~A~RqA~e 261 (291)
T d2d69a1 246 PDGPRAGAKALRDAID 261 (291)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 9742878999999999
No 6
>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.52 E-value=80 Score=9.73 Aligned_cols=25 Identities=8% Similarity=0.272 Sum_probs=18.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9995277998899999999999999
Q gi|254780141|r 168 VEEKLEKDNKLHFIQSLNRAFSRIS 192 (208)
Q Consensus 168 ~~~~~~~~~~~~~v~Al~~Al~~l~ 192 (208)
++..+.=.+.+.+.+-+.+||++.+
T Consensus 368 iRlSvGlE~~~DLi~Dl~~AL~~a~ 392 (393)
T d1n8pa_ 368 VRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 9998652899999999999999964
No 7
>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}
Probab=3.99 E-value=93 Score=9.35 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 799889999999999999
Q gi|254780141|r 174 KDNKLHFIQSLNRAFSRI 191 (208)
Q Consensus 174 ~~~~~~~v~Al~~Al~~l 191 (208)
.+++++.++|+.||++..
T Consensus 262 P~G~aaGa~A~RqA~ea~ 279 (307)
T d1geha1 262 PDGPAAGARAVRQAIDAI 279 (307)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 987088899999999999
No 8
>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}
Probab=3.76 E-value=1e+02 Score=9.17 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 79988999999999999
Q gi|254780141|r 174 KDNKLHFIQSLNRAFSR 190 (208)
Q Consensus 174 ~~~~~~~v~Al~~Al~~ 190 (208)
..++.+.++|+.||++.
T Consensus 263 P~G~~AGa~A~rqA~eA 279 (320)
T d5ruba1 263 IDGPVAGARSLRQAWQA 279 (320)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 98627769999999999
No 9
>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=2.94 E-value=1.4e+02 Score=8.43 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=13.1
Q ss_pred EEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99952779988999999999999
Q gi|254780141|r 168 VEEKLEKDNKLHFIQSLNRAFSR 190 (208)
Q Consensus 168 ~~~~~~~~~~~~~v~Al~~Al~~ 190 (208)
++..+.=.+++.+++-+.+||+.
T Consensus 355 vRlSvGlE~~eDLi~Dl~qAl~~ 377 (380)
T d1ibja_ 355 VRISAGIEDVDDLISDLDIAFKT 377 (380)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHS
T ss_pred EEEEECCCCHHHHHHHHHHHHHH
T ss_conf 99983409999999999999976
No 10
>d1gpqa_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy {Escherichia coli [TaxId: 562]}
Probab=2.76 E-value=1.5e+02 Score=8.24 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.4
Q ss_pred ECCCCCCCCHH-------HHHHHHHHHHHHHH
Q ss_conf 14660125689-------99999999999731
Q gi|254780141|r 85 LIGSQWSDKLP-------RMIQLKLIANFENN 109 (208)
Q Consensus 85 ~~~~rW~~~p~-------~~l~~~L~~~L~~~ 109 (208)
+..-+|..-|+ +.++..|.+.|.+.
T Consensus 90 ~a~y~WLG~pD~~~idg~~~m~a~L~~qL~~d 121 (127)
T d1gpqa_ 90 QEKLTWLNVNDALSIDGKTVLFAALTGSLENH 121 (127)
T ss_dssp EEEEEEESCCGGGTTHHHHHHHHHHHSHHHHC
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 00468707997100021799999999999859
Done!