RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780141|ref|YP_003064554.1| putative ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] (208 letters) >gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region. Length = 715 Score = 28.0 bits (62), Expect = 1.9 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 89 QWSDKLPRMIQLKLIANFENNGKISTVVKPN---QGIYADYQIISAIRSFEINID 140 Q ++ + ++++ ++ N +ST P QGI+ D ++A+ + E+ D Sbjct: 129 QLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQGIFWDNDSLAALLALELKAD 183 >gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional. Length = 400 Score = 27.1 bits (60), Expect = 3.4 Identities = 7/31 (22%), Positives = 17/31 (54%) Query: 126 YQIISAIRSFEINIDRHCAIITMSLKIINAH 156 + II +++ +I +++HC K + +H Sbjct: 254 FLIIRGMKTLQIRMEKHCKNAMKVAKFLESH 284 >gnl|CDD|147913 pfam06012, DUF908, Domain of Unknown Function (DUF908). Length = 313 Score = 26.9 bits (60), Expect = 3.7 Identities = 14/49 (28%), Positives = 23/49 (46%) Query: 13 IISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITE 61 IS + + + + SS F ++P Y+L E + V R I+ I E Sbjct: 226 AISNLVYLYIEPAFSSKFLESDPEFFYELVELLSPSDKVPREIRTIALE 274 >gnl|CDD|180516 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated. Length = 460 Score = 26.3 bits (59), Expect = 5.5 Identities = 11/41 (26%), Positives = 16/41 (39%) Query: 142 HCAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQ 182 H + K + A + V V E LEK K+ I+ Sbjct: 71 HADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIK 111 >gnl|CDD|177658 PLN00020, PLN00020, ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional. Length = 413 Score = 26.2 bits (58), Expect = 5.8 Identities = 10/42 (23%), Positives = 23/42 (54%) Query: 31 FHNNPVNIYDLTESTKYDESVQRHIQLIITEPITEKILNSED 72 F P++ + + YD+ V++ I + E + +K++NS+ Sbjct: 328 FPGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVNSKK 369 >gnl|CDD|179407 PRK02290, PRK02290, 3-dehydroquinate synthase; Provisional. Length = 344 Score = 26.4 bits (59), Expect = 6.0 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%) Query: 34 NPVNIYDLTESTK---YDESVQRHIQLIITEPITEK 66 PV++ DL + Y E RH + I E I EK Sbjct: 309 KPVSVVDLKPGDEVLGYLEEAARHFGMAIEETIIEK 344 >gnl|CDD|179679 PRK03934, PRK03934, phosphatidylserine decarboxylase; Provisional. Length = 265 Score = 26.1 bits (58), Expect = 6.6 Identities = 8/22 (36%), Positives = 15/22 (68%) Query: 161 VGQKVFHVEEKLEKDNKLHFIQ 182 VG+ F+ +E+++ + K FIQ Sbjct: 192 VGKMRFNFDERIQTNAKARFIQ 213 >gnl|CDD|171815 PRK12911, PRK12911, bifunctional preprotein translocase subunit SecD/SecF; Reviewed. Length = 1403 Score = 26.0 bits (57), Expect = 7.3 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 10/68 (14%) Query: 13 IISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITEPITEKILNSED 72 II C A+ L L +C +++ P+N K D R I T+ +++ D Sbjct: 11 IIICVFALALYYVLPTCLYYSRPLN-------KKIDGREARKIIERFTKQVSDA---RND 60 Query: 73 IIVRSSPI 80 +I R S I Sbjct: 61 LIPRVSKI 68 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.135 0.379 Gapped Lambda K H 0.267 0.0596 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,182,691 Number of extensions: 189815 Number of successful extensions: 392 Number of sequences better than 10.0: 1 Number of HSP's gapped: 392 Number of HSP's successfully gapped: 19 Length of query: 208 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 119 Effective length of database: 4,071,361 Effective search space: 484491959 Effective search space used: 484491959 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.3 bits)