RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780141|ref|YP_003064554.1| putative ABC transporter
protein [Candidatus Liberibacter asiaticus str. psy62]
         (208 letters)



>gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase.  This
           protein contains a glutamate 5-kinase (ProB, EC
           2.7.2.11) region followed by a gamma-glutamyl phosphate
           reductase (ProA, EC 1.2.1.41) region.
          Length = 715

 Score = 28.0 bits (62), Expect = 1.9
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 89  QWSDKLPRMIQLKLIANFENNGKISTVVKPN---QGIYADYQIISAIRSFEINID 140
           Q ++ +  ++++ ++     N  +ST   P    QGI+ D   ++A+ + E+  D
Sbjct: 129 QLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQGIFWDNDSLAALLALELKAD 183


>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional.
          Length = 400

 Score = 27.1 bits (60), Expect = 3.4
 Identities = 7/31 (22%), Positives = 17/31 (54%)

Query: 126 YQIISAIRSFEINIDRHCAIITMSLKIINAH 156
           + II  +++ +I +++HC       K + +H
Sbjct: 254 FLIIRGMKTLQIRMEKHCKNAMKVAKFLESH 284


>gnl|CDD|147913 pfam06012, DUF908, Domain of Unknown Function (DUF908). 
          Length = 313

 Score = 26.9 bits (60), Expect = 3.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 13  IISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITE 61
            IS  + + +  + SS F  ++P   Y+L E     + V R I+ I  E
Sbjct: 226 AISNLVYLYIEPAFSSKFLESDPEFFYELVELLSPSDKVPREIRTIALE 274


>gnl|CDD|180516 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
          Length = 460

 Score = 26.3 bits (59), Expect = 5.5
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 142 HCAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQ 182
           H     +  K + A       + V  V E LEK  K+  I+
Sbjct: 71  HADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIK 111


>gnl|CDD|177658 PLN00020, PLN00020, ribulose bisphosphate carboxylase/oxygenase
           activase -RuBisCO activase (RCA); Provisional.
          Length = 413

 Score = 26.2 bits (58), Expect = 5.8
 Identities = 10/42 (23%), Positives = 23/42 (54%)

Query: 31  FHNNPVNIYDLTESTKYDESVQRHIQLIITEPITEKILNSED 72
           F   P++ +    +  YD+ V++ I  +  E + +K++NS+ 
Sbjct: 328 FPGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVNSKK 369


>gnl|CDD|179407 PRK02290, PRK02290, 3-dehydroquinate synthase; Provisional.
          Length = 344

 Score = 26.4 bits (59), Expect = 6.0
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 34  NPVNIYDLTESTK---YDESVQRHIQLIITEPITEK 66
            PV++ DL    +   Y E   RH  + I E I EK
Sbjct: 309 KPVSVVDLKPGDEVLGYLEEAARHFGMAIEETIIEK 344


>gnl|CDD|179679 PRK03934, PRK03934, phosphatidylserine decarboxylase; Provisional.
          Length = 265

 Score = 26.1 bits (58), Expect = 6.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 161 VGQKVFHVEEKLEKDNKLHFIQ 182
           VG+  F+ +E+++ + K  FIQ
Sbjct: 192 VGKMRFNFDERIQTNAKARFIQ 213


>gnl|CDD|171815 PRK12911, PRK12911, bifunctional preprotein translocase subunit
          SecD/SecF; Reviewed.
          Length = 1403

 Score = 26.0 bits (57), Expect = 7.3
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 13 IISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITEPITEKILNSED 72
          II C  A+ L   L +C +++ P+N        K D    R I    T+ +++      D
Sbjct: 11 IIICVFALALYYVLPTCLYYSRPLN-------KKIDGREARKIIERFTKQVSDA---RND 60

Query: 73 IIVRSSPI 80
          +I R S I
Sbjct: 61 LIPRVSKI 68


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,182,691
Number of extensions: 189815
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 19
Length of query: 208
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,071,361
Effective search space: 484491959
Effective search space used: 484491959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)