RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780141|ref|YP_003064554.1| putative ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] (208 letters) >2iqi_A Hypothetical protein XCC0632; structural genomics, PSI-2, protein structure initiative; 2.70A {Xanthomonas campestris PV} (A:) Length = 192 Score = 135 bits (340), Expect = 6e-33 Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 6/184 (3%) Query: 25 SLSSCFFHNNPVNIYDLT-ESTKYDESVQRHIQLIITEPITEKILNSEDIIVRSSPIEIQ 83 SLS P IY T T Q QL++ +P +I++S I VR +P E+Q Sbjct: 1 SLSLG--DQKPATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQ 58 Query: 84 YLIGSQWSDKLPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDRH- 142 G+ W+ M++ ++ FE++GKI+ V + GI +DY++ +R FE + Sbjct: 59 VYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQS 118 Query: 143 --CAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEIIDWTL 200 A I ++ K++++ D +V + F V + + +A +++++E++ WTL Sbjct: 119 LPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTL 178 Query: 201 SSLP 204 + Sbjct: 179 ITGQ 182 >1nkz_A Light-harvesting protein B-800/850, alpha chain; light harvesting complex II, trans-membrane helices, rhodopin glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} (A:) Length = 53 Score = 29.0 bits (65), Expect = 0.53 Identities = 10/15 (66%), Positives = 10/15 (66%) Query: 108 NNGKISTVVKPNQGI 122 N GKI TVV P GI Sbjct: 2 NQGKIWTVVNPAIGI 16 >1ijd_A Light-harvesting protein B-800/820, alpha chain; pigment-protein complex, alpha-helix apoproteins, intergral membrane protein; HET: FME RPA BCL; 3.00A {Rhodoblastus acidophilus} (A:) Length = 53 Score = 29.0 bits (65), Expect = 0.53 Identities = 9/15 (60%), Positives = 10/15 (66%) Query: 108 NNGKISTVVKPNQGI 122 N GKI TVV P G+ Sbjct: 2 NQGKIWTVVPPAFGL 16 >3k0y_A Putative toxin related protein; structural genomics, joint center for structural genomics, JCSG; HET: 2PE; 2.16A {Parabacteroides distasonis atcc 8503} (A:) Length = 229 Score = 26.7 bits (59), Expect = 2.3 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 3/58 (5%) Query: 34 NPVNIYDLTESTKYDESVQ-RHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQW 90 + + + ++ I I+T+ I + + D I + P+ I + W Sbjct: 59 TILADSTQSNLGGFSHYIKVNAIHNILTKSIAKNEGAANDSIYGTDPVSIYN--NNXW 114 >2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli} (A:1-160) Length = 160 Score = 26.5 bits (58), Expect = 2.6 Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 15/76 (19%) Query: 122 IYADYQIISAIRSFEINIDRHCAIITMSLKIINAHDNSL---------------VGQKVF 166 + ++++ +F+ I+ + L + +S V Sbjct: 64 RVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVS 123 Query: 167 HVEEKLEKDNKLHFIQ 182 + E L KD L +Q Sbjct: 124 YSEHNLSKDKPLTRMQ 139 >1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A {Rice dwarf virus} (A:1-141,A:230-245,A:658-772,A:963-971) Length = 281 Score = 25.4 bits (55), Expect = 6.4 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 22/126 (17%) Query: 19 AVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITEPITEKILNSEDIIVRSS 78 +VL+ S H PV +Y++ + K T IT I +E +V + Sbjct: 16 SVLVTEGTS----HYTPVEVYNILDELK-------------TIKITSTI--AEQSVVSRT 56 Query: 79 PIEIQYLIGSQWSDKLPRMIQLKLIANFE--NNGKISTVVKPNQGIYADYQIISAIRSFE 136 PI + IG Q KL + +K ++ + +++ +V + IY + I ++E Sbjct: 57 PIPLSK-IGLQDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIEHDSAYE 115 Query: 137 INIDRH 142 ++ H Sbjct: 116 PSLTMH 121 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.135 0.379 Gapped Lambda K H 0.267 0.0640 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,453,897 Number of extensions: 60207 Number of successful extensions: 146 Number of sequences better than 10.0: 1 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 14 Length of query: 208 Length of database: 4,956,049 Length adjustment: 85 Effective length of query: 123 Effective length of database: 2,082,624 Effective search space: 256162752 Effective search space used: 256162752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.0 bits)