RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780141|ref|YP_003064554.1| putative ABC transporter
protein [Candidatus Liberibacter asiaticus str. psy62]
         (208 letters)



>2iqi_A Hypothetical protein XCC0632; structural genomics, PSI-2,
           protein structure initiative; 2.70A {Xanthomonas
           campestris PV} (A:)
          Length = 192

 Score =  135 bits (340), Expect = 6e-33
 Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 6/184 (3%)

Query: 25  SLSSCFFHNNPVNIYDLT-ESTKYDESVQRHIQLIITEPITEKILNSEDIIVRSSPIEIQ 83
           SLS       P  IY  T   T      Q   QL++ +P   +I++S  I VR +P E+Q
Sbjct: 1   SLSLG--DQKPATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQ 58

Query: 84  YLIGSQWSDKLPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDRH- 142
              G+ W+     M++  ++  FE++GKI+ V +   GI +DY++   +R FE +     
Sbjct: 59  VYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQS 118

Query: 143 --CAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEIIDWTL 200
              A I ++ K++++ D  +V  + F V       +      +  +A +++++E++ WTL
Sbjct: 119 LPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTL 178

Query: 201 SSLP 204
            +  
Sbjct: 179 ITGQ 182


>1nkz_A Light-harvesting protein B-800/850, alpha chain; light
           harvesting complex II, trans-membrane helices, rhodopin
           glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus
           acidophilus} (A:)
          Length = 53

 Score = 29.0 bits (65), Expect = 0.53
 Identities = 10/15 (66%), Positives = 10/15 (66%)

Query: 108 NNGKISTVVKPNQGI 122
           N GKI TVV P  GI
Sbjct: 2   NQGKIWTVVNPAIGI 16


>1ijd_A Light-harvesting protein B-800/820, alpha chain;
           pigment-protein complex, alpha-helix apoproteins,
           intergral membrane protein; HET: FME RPA BCL; 3.00A
           {Rhodoblastus acidophilus} (A:)
          Length = 53

 Score = 29.0 bits (65), Expect = 0.53
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 108 NNGKISTVVKPNQGI 122
           N GKI TVV P  G+
Sbjct: 2   NQGKIWTVVPPAFGL 16


>3k0y_A Putative toxin related protein; structural genomics, joint
           center for structural genomics, JCSG; HET: 2PE; 2.16A
           {Parabacteroides distasonis atcc 8503} (A:)
          Length = 229

 Score = 26.7 bits (59), Expect = 2.3
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 34  NPVNIYDLTESTKYDESVQ-RHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQW 90
             +     +    +   ++   I  I+T+ I +    + D I  + P+ I     + W
Sbjct: 59  TILADSTQSNLGGFSHYIKVNAIHNILTKSIAKNEGAANDSIYGTDPVSIYN--NNXW 114


>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid,
           reactive cysteine, cytosolic protein; 1.85A {Escherichia
           coli} (A:1-160)
          Length = 160

 Score = 26.5 bits (58), Expect = 2.6
 Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 15/76 (19%)

Query: 122 IYADYQIISAIRSFEINIDRHCAIITMSLKIINAHDNSL---------------VGQKVF 166
              + ++++   +F+        I+ + L     + +S                    V 
Sbjct: 64  RVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVS 123

Query: 167 HVEEKLEKDNKLHFIQ 182
           + E  L KD  L  +Q
Sbjct: 124 YSEHNLSKDKPLTRMQ 139


>1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A
           {Rice dwarf virus}
           (A:1-141,A:230-245,A:658-772,A:963-971)
          Length = 281

 Score = 25.4 bits (55), Expect = 6.4
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 22/126 (17%)

Query: 19  AVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITEPITEKILNSEDIIVRSS 78
           +VL+    S    H  PV +Y++ +  K             T  IT  I  +E  +V  +
Sbjct: 16  SVLVTEGTS----HYTPVEVYNILDELK-------------TIKITSTI--AEQSVVSRT 56

Query: 79  PIEIQYLIGSQWSDKLPRMIQLKLIANFE--NNGKISTVVKPNQGIYADYQIISAIRSFE 136
           PI +   IG Q   KL  +  +K  ++    +  +++ +V   + IY  +  I    ++E
Sbjct: 57  PIPLSK-IGLQDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIEHDSAYE 115

Query: 137 INIDRH 142
            ++  H
Sbjct: 116 PSLTMH 121


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,453,897
Number of extensions: 60207
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 14
Length of query: 208
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 123
Effective length of database: 2,082,624
Effective search space: 256162752
Effective search space used: 256162752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)