RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780141|ref|YP_003064554.1| putative ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] (208 letters) >2iqi_A Hypothetical protein XCC0632; structural genomics, PSI-2, protein structure initiative; 2.70A {Xanthomonas campestris PV} SCOP: c.51.6.2 Length = 192 Score = 139 bits (352), Expect = 3e-34 Identities = 43/172 (25%), Positives = 88/172 (51%), Gaps = 4/172 (2%) Query: 35 PVNIYDLTESTKYDESVQR-HIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDK 93 P IY T + + + QL++ +P +I++S I VR +P E+Q G+ W+ Sbjct: 9 PATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQP 68 Query: 94 LPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDRH---CAIITMSL 150 M++ ++ FE++GKI+ V + GI +DY++ +R FE + A I ++ Sbjct: 69 ATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNA 128 Query: 151 KIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEIIDWTLSS 202 K++++ D +V + F V + + +A +++++E++ WTL + Sbjct: 129 KLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLIT 180 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 29.5 bits (66), Expect = 0.52 Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 23/64 (35%) Query: 12 KIISCSLAVLLCTSLSSCFFHNNPVNIYDLTES----TKYDES-VQRHIQLIITEPIT-E 65 + + + PV YD T S +R + II P+ E Sbjct: 449 SFNAKDIQI--------------PV--YD-TFDGSDLRVLSGSISERIVDCIIRLPVKWE 491 Query: 66 KILN 69 Sbjct: 492 TTTQ 495 Score = 28.8 bits (64), Expect = 0.91 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 28/123 (22%) Query: 33 NNPVNIYDLT-----ESTKYDESVQRHIQLIITEPI------TEKIL-----NSEDIIVR 76 NNPVN LT E K ++ + +I E I TEKI +S R Sbjct: 1667 NNPVN---LTIHFGGEKGK---RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720 Query: 77 SSPIEIQYLIGSQWSDKLPRMIQLKLIANFENNGKI---STVVKPNQGIYADYQIISAIR 133 S E L +Q++ +++ + ++ G I +T + G YA ++ + Sbjct: 1721 S---EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777 Query: 134 SFE 136 S E Sbjct: 1778 SIE 1780 Score = 26.1 bits (57), Expect = 6.7 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 9/46 (19%) Query: 154 NAHDN------SLVGQKVFHVEEKLEKDNKLHFIQSLN---RAFSR 190 A D+ LVG+ + +V +E F Q LN F Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93 >1nkz_A Light-harvesting protein B-800/850, alpha chain; light harvesting complex II, trans-membrane helices, rhodopin glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_A* 2fkw_A* Length = 53 Score = 28.6 bits (64), Expect = 1.1 Identities = 10/15 (66%), Positives = 10/15 (66%) Query: 108 NNGKISTVVKPNQGI 122 N GKI TVV P GI Sbjct: 2 NQGKIWTVVNPAIGI 16 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 28.2 bits (62), Expect = 1.3 Identities = 21/120 (17%), Positives = 53/120 (44%), Gaps = 30/120 (25%) Query: 32 HNNPVNIYDLTESTKYDESVQRHIQLIITEPIT-EKILN--------------SEDIIVR 76 H + V+I+++ E+ +Y + + L I + + ++++ S+DII + Sbjct: 949 HGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQ 1008 Query: 77 SSPIE-------IQYLIGSQWSD--KLPRMIQLKLIANFENNGK--ISTVVKPNQGIYAD 125 PI ++ I S +D ++ + + + + N +G +S + +G++ D Sbjct: 1009 VDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSAL----RGMFKD 1064 >1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A {Rice dwarf virus} SCOP: e.28.1.2 Length = 1019 Score = 25.7 bits (56), Expect = 8.7 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 22/126 (17%) Query: 19 AVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITEPITEKILNSEDIIVRSS 78 +VL+ S H PV +Y++ + K T IT I +E +V + Sbjct: 16 SVLVTEGTS----HYTPVEVYNILDELK-------------TIKITSTI--AEQSVVSRT 56 Query: 79 PIEIQYLIGSQWSDKLPRMIQLKLIANFE--NNGKISTVVKPNQGIYADYQIISAIRSFE 136 PI + IG Q KL + +K ++ + +++ +V + IY + I ++E Sbjct: 57 PIPLSK-IGLQDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIEHDSAYE 115 Query: 137 INIDRH 142 ++ H Sbjct: 116 PSLTMH 121 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.135 0.379 Gapped Lambda K H 0.267 0.0690 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,716,205 Number of extensions: 74698 Number of successful extensions: 199 Number of sequences better than 10.0: 1 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 11 Length of query: 208 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 120 Effective length of database: 3,559,758 Effective search space: 427170960 Effective search space used: 427170960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.7 bits)