RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780141|ref|YP_003064554.1| putative ABC transporter
protein [Candidatus Liberibacter asiaticus str. psy62]
         (208 letters)



>2iqi_A Hypothetical protein XCC0632; structural genomics, PSI-2, protein
           structure initiative; 2.70A {Xanthomonas campestris PV}
           SCOP: c.51.6.2
          Length = 192

 Score =  139 bits (352), Expect = 3e-34
 Identities = 43/172 (25%), Positives = 88/172 (51%), Gaps = 4/172 (2%)

Query: 35  PVNIYDLTESTKYDESVQR-HIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDK 93
           P  IY  T     + +  +   QL++ +P   +I++S  I VR +P E+Q   G+ W+  
Sbjct: 9   PATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQP 68

Query: 94  LPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDRH---CAIITMSL 150
              M++  ++  FE++GKI+ V +   GI +DY++   +R FE +        A I ++ 
Sbjct: 69  ATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNA 128

Query: 151 KIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEIIDWTLSS 202
           K++++ D  +V  + F V       +      +  +A +++++E++ WTL +
Sbjct: 129 KLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLIT 180


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.5 bits (66), Expect = 0.52
 Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 23/64 (35%)

Query: 12  KIISCSLAVLLCTSLSSCFFHNNPVNIYDLTES----TKYDES-VQRHIQLIITEPIT-E 65
              +  + +              PV  YD T           S  +R +  II  P+  E
Sbjct: 449 SFNAKDIQI--------------PV--YD-TFDGSDLRVLSGSISERIVDCIIRLPVKWE 491

Query: 66  KILN 69
               
Sbjct: 492 TTTQ 495



 Score = 28.8 bits (64), Expect = 0.91
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 28/123 (22%)

Query: 33   NNPVNIYDLT-----ESTKYDESVQRHIQLIITEPI------TEKIL-----NSEDIIVR 76
            NNPVN   LT     E  K    ++ +   +I E I      TEKI      +S     R
Sbjct: 1667 NNPVN---LTIHFGGEKGK---RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720

Query: 77   SSPIEIQYLIGSQWSDKLPRMIQLKLIANFENNGKI---STVVKPNQGIYADYQIISAIR 133
            S   E   L  +Q++     +++     + ++ G I   +T    + G YA    ++ + 
Sbjct: 1721 S---EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777

Query: 134  SFE 136
            S E
Sbjct: 1778 SIE 1780



 Score = 26.1 bits (57), Expect = 6.7
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 9/46 (19%)

Query: 154 NAHDN------SLVGQKVFHVEEKLEKDNKLHFIQSLN---RAFSR 190
            A D+       LVG+ + +V   +E      F Q LN     F  
Sbjct: 48  FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93


>1nkz_A Light-harvesting protein B-800/850, alpha chain; light harvesting
           complex II, trans-membrane helices, rhodopin glucoside;
           HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus}
           SCOP: f.3.1.1 PDB: 1kzu_A* 2fkw_A*
          Length = 53

 Score = 28.6 bits (64), Expect = 1.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)

Query: 108 NNGKISTVVKPNQGI 122
           N GKI TVV P  GI
Sbjct: 2   NQGKIWTVVNPAIGI 16


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 28.2 bits (62), Expect = 1.3
 Identities = 21/120 (17%), Positives = 53/120 (44%), Gaps = 30/120 (25%)

Query: 32   HNNPVNIYDLTESTKYDESVQRHIQLIITEPIT-EKILN--------------SEDIIVR 76
            H + V+I+++ E+ +Y   + +   L I + +  ++++               S+DII +
Sbjct: 949  HGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQ 1008

Query: 77   SSPIE-------IQYLIGSQWSD--KLPRMIQLKLIANFENNGK--ISTVVKPNQGIYAD 125
              PI        ++  I S  +D  ++ + + +  + N   +G   +S +    +G++ D
Sbjct: 1009 VDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSAL----RGMFKD 1064


>1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A {Rice
           dwarf virus} SCOP: e.28.1.2
          Length = 1019

 Score = 25.7 bits (56), Expect = 8.7
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 22/126 (17%)

Query: 19  AVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITEPITEKILNSEDIIVRSS 78
           +VL+    S    H  PV +Y++ +  K             T  IT  I  +E  +V  +
Sbjct: 16  SVLVTEGTS----HYTPVEVYNILDELK-------------TIKITSTI--AEQSVVSRT 56

Query: 79  PIEIQYLIGSQWSDKLPRMIQLKLIANFE--NNGKISTVVKPNQGIYADYQIISAIRSFE 136
           PI +   IG Q   KL  +  +K  ++    +  +++ +V   + IY  +  I    ++E
Sbjct: 57  PIPLSK-IGLQDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIEHDSAYE 115

Query: 137 INIDRH 142
            ++  H
Sbjct: 116 PSLTMH 121


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,716,205
Number of extensions: 74698
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 11
Length of query: 208
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 120
Effective length of database: 3,559,758
Effective search space: 427170960
Effective search space used: 427170960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)