RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780141|ref|YP_003064554.1| putative ABC transporter
protein [Candidatus Liberibacter asiaticus str. psy62]
         (208 letters)



>d2iqia1 c.51.6.2 (A:32-209) Hypothetical protein XCC0632
           {Xanthomonas campestris pv. campestris [TaxId: 340]}
          Length = 178

 Score =  131 bits (331), Expect = 4e-32
 Identities = 42/169 (24%), Positives = 87/169 (51%), Gaps = 4/169 (2%)

Query: 38  IYDLTESTKYDESVQR-HIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPR 96
           IY  T     + +  +   QL++ +P   +I++S  I VR +P E+Q   G+ W+     
Sbjct: 3   IYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATD 62

Query: 97  MIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDRH---CAIITMSLKII 153
           M++  ++  FE++GKI+ V +   GI +DY++   +R FE +        A I ++ K++
Sbjct: 63  MLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLL 122

Query: 154 NAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEIIDWTLSS 202
           ++ D  +V  + F V       +      +  +A +++++E++ WTL +
Sbjct: 123 HSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLIT 171


>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple
           bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
          Length = 53

 Score = 29.0 bits (65), Expect = 0.35
 Identities = 10/15 (66%), Positives = 10/15 (66%)

Query: 108 NNGKISTVVKPNQGI 122
           N GKI TVV P  GI
Sbjct: 2   NQGKIWTVVNPAIGI 16


>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits
           {Rhodoblastus acidophilus [TaxId: 1074]}
          Length = 46

 Score = 28.2 bits (63), Expect = 0.47
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 108 NNGKISTVVKPNQGI 122
           N GKI TVV P  G+
Sbjct: 2   NQGKIWTVVPPAFGL 16


>d7reqb1 c.1.19.1 (B:16-475) Methylmalonyl-CoA mutase beta subunit,
           domain 1 {Propionibacterium freudenreichii, subsp.
           shermanii [TaxId: 1744]}
          Length = 460

 Score = 27.4 bits (60), Expect = 0.86
 Identities = 6/49 (12%), Positives = 16/49 (32%)

Query: 13  IISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITE 61
           I+  S+A    +   +      P           +   + R+  +++ E
Sbjct: 325 ILRGSIATFSASVGGAESITTLPFTQALGLPEDDFPLRIARNTGIVLAE 373


>d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia
          coli [TaxId: 562]}
          Length = 100

 Score = 24.7 bits (54), Expect = 5.3
 Identities = 6/35 (17%), Positives = 16/35 (45%)

Query: 31 FHNNPVNIYDLTESTKYDESVQRHIQLIITEPITE 65
                 I +L  + +++++V R + +     +TE
Sbjct: 64 VEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTE 98


>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16,
           RGS16 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 116

 Score = 24.2 bits (52), Expect = 8.5
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 120 QGIYADYQIISAIRSFEINIDRHCAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLH 179
             I+ ++    A +  E+NID     +T     +     +            +EKD+   
Sbjct: 51  HQIFEEFICSEAPK--EVNIDHETRELTR--MNLQTATATCFDAAQGKTRTLMEKDSYPR 106

Query: 180 FIQS 183
           F++S
Sbjct: 107 FLKS 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 752,947
Number of extensions: 33470
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 10
Length of query: 208
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,295,466
Effective search space: 164524182
Effective search space used: 164524182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)