RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780141|ref|YP_003064554.1| putative ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] (208 letters) >d2iqia1 c.51.6.2 (A:32-209) Hypothetical protein XCC0632 {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 178 Score = 131 bits (331), Expect = 4e-32 Identities = 42/169 (24%), Positives = 87/169 (51%), Gaps = 4/169 (2%) Query: 38 IYDLTESTKYDESVQR-HIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPR 96 IY T + + + QL++ +P +I++S I VR +P E+Q G+ W+ Sbjct: 3 IYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATD 62 Query: 97 MIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDRH---CAIITMSLKII 153 M++ ++ FE++GKI+ V + GI +DY++ +R FE + A I ++ K++ Sbjct: 63 MLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLL 122 Query: 154 NAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEIIDWTLSS 202 ++ D +V + F V + + +A +++++E++ WTL + Sbjct: 123 HSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLIT 171 >d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]} Length = 53 Score = 29.0 bits (65), Expect = 0.35 Identities = 10/15 (66%), Positives = 10/15 (66%) Query: 108 NNGKISTVVKPNQGI 122 N GKI TVV P GI Sbjct: 2 NQGKIWTVVNPAIGI 16 >d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]} Length = 46 Score = 28.2 bits (63), Expect = 0.47 Identities = 9/15 (60%), Positives = 10/15 (66%) Query: 108 NNGKISTVVKPNQGI 122 N GKI TVV P G+ Sbjct: 2 NQGKIWTVVPPAFGL 16 >d7reqb1 c.1.19.1 (B:16-475) Methylmalonyl-CoA mutase beta subunit, domain 1 {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 460 Score = 27.4 bits (60), Expect = 0.86 Identities = 6/49 (12%), Positives = 16/49 (32%) Query: 13 IISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITE 61 I+ S+A + + P + + R+ +++ E Sbjct: 325 ILRGSIATFSASVGGAESITTLPFTQALGLPEDDFPLRIARNTGIVLAE 373 >d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia coli [TaxId: 562]} Length = 100 Score = 24.7 bits (54), Expect = 5.3 Identities = 6/35 (17%), Positives = 16/35 (45%) Query: 31 FHNNPVNIYDLTESTKYDESVQRHIQLIITEPITE 65 I +L + +++++V R + + +TE Sbjct: 64 VEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTE 98 >d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16, RGS16 {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Score = 24.2 bits (52), Expect = 8.5 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 4/64 (6%) Query: 120 QGIYADYQIISAIRSFEINIDRHCAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLH 179 I+ ++ A + E+NID +T + + +EKD+ Sbjct: 51 HQIFEEFICSEAPK--EVNIDHETRELTR--MNLQTATATCFDAAQGKTRTLMEKDSYPR 106 Query: 180 FIQS 183 F++S Sbjct: 107 FLKS 110 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.135 0.379 Gapped Lambda K H 0.267 0.0506 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 752,947 Number of extensions: 33470 Number of successful extensions: 80 Number of sequences better than 10.0: 1 Number of HSP's gapped: 79 Number of HSP's successfully gapped: 10 Length of query: 208 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 127 Effective length of database: 1,295,466 Effective search space: 164524182 Effective search space used: 164524182 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.0 bits)