HHsearch alignment for GI: 254780142 and conserved domain: PRK02625
>PRK02625 DNA-directed RNA polymerase subunit gamma; Provisional.
Probab=100.00 E-value=0 Score=1478.32 Aligned_cols=571 Identities=56% Similarity=0.966 Sum_probs=537.7
Q ss_pred CCCCCEEEEEEECCCHHHHHHCC---------EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78640536898458867885014---------489717554254568756887336213685667721566415634488
Q gi|254780142|r 13 TDDRGFDSVRISIASPAKIASLS---------YGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGKYKRMKYKG 83 (1398)
Q Consensus 13 ~~~~~i~~i~f~l~spe~I~~~S---------~~ev~~~et~n~~~~kP~~~Gl~d~ri~g~~~d~~c~Cg~~~~~~~~g 83 (1398)
T Consensus 4 ~~~~~f~~i~I~LASPe~Ir~WS~r~lpngeivGEVtkpeTINYrT~KPE~dGLFCErIFGP~Kd~eC~CGKyk~~k~kg 83 (627)
T PRK02625 4 RTENHFDYVKIGLASPERIMQWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCEKIFGPSKDWECHCGKYKRVRHRG 83 (627)
T ss_pred CCCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEHHHCCCCCCCEEECCCCCCCCCCC
T ss_conf 31057672799836989999987530677865688889742125779988888830444087758377188721303287
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEECCCCCC-HHHHCCCC
Q ss_conf 35675788530477578767720027762201301225789999809996563013321112321788651-04322369
Q gi|254780142|r 84 IICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRDVERVLYFESYVVVDPGLSS-LEKYQILT 162 (1398)
Q Consensus 84 ~~C~~Cg~~~~~~~~r~ghfGhIeLa~PV~Hi~f~k~~~~~i~~~l~~~~~~~~~v~y~~~~~~~~~~~~~-~~~~~~~~ 162 (1398)
T Consensus 84 ~vCe~CGVEvt~S~VRR~RMGHIeLA~PV~HIWYLK~~PS~Is~LLd~~~KeLE~ViYf~~yiV~dpg~~~~l~~k~ll~ 163 (627)
T PRK02625 84 IVCERCGVEVTESRVRRHRMGYIKLAAPVSHVWYLKGIPSYVAILLDMPLRDVEQIVYFNCYVVLDPGNHKNLKYKQLLT 163 (627)
T ss_pred EECCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHHCC
T ss_conf 16687685734352110135644465870443340688269999808868888875612306875677686346664315
Q ss_pred HHHHHHHHHHCCC-C-----CEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999886763585-5-----506115526778887726748899999987310322034788644778886666348985
Q gi|254780142|r 163 EEEYVEAVSQFGQ-D-----QFIAMMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNP 236 (1398)
Q Consensus 163 ~~~~~~~~~~~~~-~-----~~~~~~g~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~P 236 (1398)
T Consensus 164 e~~~~e~~~~i~~~~~~~~~~~~~~~GaeAI~~lL~~lDL~~~~~~Lr~ei~~~k-~qkr~KliKRLkli~~Fi~S~~rP 242 (627)
T PRK02625 164 EDQWLEIEDEIYAEDSELENEEVVGIGAEALKQLLEDLNLEEEAEQLREEIANSK-GQKRAKLIKRLRVIDNFIATGARP 242 (627)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8999998988640221004764015449999999886798999999999976474-256899999999999998669883
Q ss_pred CEEEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 11286304507622351388469731310037899999998699999987398356777699999998888742776787
Q gi|254780142|r 237 GWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKR 316 (1398)
Q Consensus 237 ewmil~~lpV~P~~~RP~v~~~~g~~~~dDlt~~~~~Ii~~N~~Lk~~~~~~ap~~i~~~~~~lLQ~~v~~~~dn~~~~~ 316 (1398)
T Consensus 243 EWMIL~vLPVlPP~LRP~v~Ldggr~a~sDlN~lYrriI~rNnrLk~~~~~~ap~~ii~~ekrlLQeaVd~L~DN~~~g~ 322 (627)
T PRK02625 243 EWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGRRGR 322 (627)
T ss_pred HHEEEECCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 50787323558987774278668865666658999999999999999886599578888899999999888544655688
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 72478765067899861023782000346510045774034125543546200348987761289999999987986663
Q gi|254780142|r 317 VVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTV 396 (1398)
Q Consensus 317 ~~~~~~~rp~ks~~~rlkgK~GrfR~nl~GKRVdfs~RsVI~pdP~l~~~evgvP~~~A~~L~~P~~~~~L~~~g~~~~i 396 (1398)
T Consensus 323 ~~~~~~~RplKSlsd~lkGK~GRfRqnLlGKRVDySgRsVIvvgP~L~l~qcGlP~~mA~elf~Pfvi~~l~~~~~~~~i 402 (627)
T PRK02625 323 TVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIVNNI 402 (627)
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCH
T ss_conf 64279997021357662687880212146551056787068249865214308848999984418999999970664545
Q ss_pred CCCCCEEECCCCCEEHHHHHHHCCCEEEECCCCCCEECCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCEEEEECCCCH
Q ss_conf 00010012248825013266656978997576310111401235899449547973122545467877545699746899
Q gi|254780142|r 397 KQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISP 476 (1398)
Q Consensus 397 ~~~k~~i~~~~~~v~~v~rhl~~gd~Vl~NRqPsLHr~Simah~~~v~~~~t~rln~~vc~pyNADFDGDEMnlHvPqs~ 476 (1398)
T Consensus 403 ~~ak~~i~~~~~~v~~~l~~v~~~~pVllNRaPTLHRlgiqaf~p~l~~g~ai~lhplvc~~fNADFDGDqMavhvPls~ 482 (627)
T PRK02625 403 KAAKKLIQRADDEVWQVLQEVIEGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSL 482 (627)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEECEEEEEECCEEEEECCCCCCCCCCCCCCCCEEECCCCCH
T ss_conf 77999988668389999999973995787588521004111104688778048865545776689988721441378998
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCC-CCCCCCEECCHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 999999998767505423788782044025899999987336788-7446814179999999998889867852365204
Q gi|254780142|r 477 EAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCYLSTVHEG-DPGEGMLFADMGEVYHALENKIVTLHSKIRGRYK 555 (1398)
Q Consensus 477 eAraEa~~Lm~~~~niisP~~g~Pi~~~~QD~i~G~y~lT~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~a~i~~~~~ 555 (1398)
T Consensus 483 ea~~Ea~~lmls~~nilsPa~g~pi~~psQDmvlG~yylT~~~~~~~~~~~~~f~~~~~~~~a~~~~~i~lh~~i~~r~~ 562 (627)
T PRK02625 483 EAQTEARMLMLASNNILSPATGEPIVTPSQDMVLGCYYLTAENPGAQKDAGRYFASLEDVIHAFEDGRIDLHAWVWVRFN 562 (627)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 99999999853115777788899722355121103236503567764788865789999999997696024665899965
Q ss_pred CCC--------------------------------CCCCCCCEEECCCCCCCCCCEEEECC
Q ss_conf 645--------------------------------66761424521797751122055458
Q gi|254780142|r 556 SVD--------------------------------KDGNSISKIYDTTPGRMIIGEILPRH 584 (1398)
Q Consensus 556 ~~~--------------------------------~~~~~~~~~~~tt~Gr~~~~~ilp~~ 584 (1398)
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TT~Gri~fn~~i~~~ 623 (627)
T PRK02625 563 GEVEDDDEDDEPLKTETLEDGTRIEQWNYRRDRFDEDGNLISQYILTTVGRVIMNKTIQDA 623 (627)
T ss_pred CCCCCCCCCCCCCEEEECCCCCEEEEECCEEEEECCCCCEEEEEEEECCCEEEHHHHHHHH
T ss_conf 7402465445650368627884377501204553367876568999477444446665887