HHsearch alignment for GI: 254780142 and conserved domain: PRK05258
>PRK05258 DNA-directed RNA polymerase subunit beta'; Provisional.
Probab=96.26 E-value=4.7e-05 Score=55.96 Aligned_cols=30 Identities=10% Similarity=-0.015 Sum_probs=25.6
Q ss_pred EECHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH
Q ss_conf 006125601247628614894188645456641069
Q gi|254780142|r 1242 AINHKHIEVVVRHMLQKVEITDPADTEYILGDNVDR 1277 (1398)
Q Consensus 1242 ~IN~RHIeLIaD~MT~kg~I~~~Gdt~~i~g~~Inr 1277 (1398)
T Consensus 1102 ~~n~~~~~~g~~~a~~~~~llG------ITr~~l~t 1131 (1204)
T PRK05258 1102 DANKKVLISGGIPATARPVLLG------ITKASLET 1131 (1204)
T ss_pred HHHHHHHHCCCCCCEEEEEEEE------EECCCCCC
T ss_conf 9999999759976445458877------63165233