HHsearch alignment for GI: 254780142 and conserved domain: pfam05183
>pfam05183 RdRP RNA dependent RNA polymerase. This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates.
Probab=90.52 E-value=0.3 Score=27.34 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=31.7
Q ss_pred HHCCCEEEECCCCCCEECCEEEEEEEEECC------------CEEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf 656978997576310111401235899449------------5479731225454678775456997
Q gi|254780142|r 417 VVHQHVVLLNRAPSLHRLSMQAFEPKIISG------------KAIQLHPLVCAGYNADFDGDQMAVY 471 (1398)
Q Consensus 417 l~~gd~Vl~NRqPsLHr~Simah~~~v~~~------------~t~rln~~vc~pyNADFDGDEMnlH 471 (1398)
T Consensus 228 ~~~g~-VlV~RnP~lhPGDiq~~~AV~~p~L~hl~dvIVFp~kG~rpl~~~lS--GgDlDGD~y~V~ 291 (381)
T pfam05183 228 VIGGD-VLVTRNPCLHPGDIRVLKAVDVPELRHLKDVIVFPQKGDRPLPSELS--GGDLDGDLYFVI 291 (381)
T ss_pred EEEEE-EEEEECCCCCCCCEEEEECCCCHHHHCCCCEEEECCCCCCCCHHHHC--CCCCCCCEEEEE
T ss_conf 55003-99983676688854788626765564138789948989988557735--778788657997