BLAST/PSIBLAST alignment of GI: 254780142 and GI: 159184989 at iteration 1
>gi|159184989|ref|NP_354930.2| DNA-directed RNA polymerase subunit beta' [Agrobacterium tumefaciens str. C58] Length = 1402
>gi|41018088|sp|Q8UE09|RPOC_AGRT5 RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' Length = 1402
>gi|159140263|gb|AAK87715.2| DNA-directed RNA polymerase beta' chain [Agrobacterium tumefaciens str. C58] Length = 1402
Score = 2093 bits (5423), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 993/1402 (70%), Positives = 1183/1402 (84%), Gaps = 4/1402 (0%)
Query: 1 MQQEVMRFFNPWTDDRGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCA 60
M QEVM FNP + FDS+RISIASP KI S SYGEIKKPETINYRTFKPERDGLFCA
Sbjct: 1 MNQEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA 60
Query: 61 RIFGPIKDYECICGKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKS 120
RIFGPIKDYEC+CGKYKRMKYKGIICEKCGVEVTLS VRR+RM HI+LA+PVAH WFLKS
Sbjct: 61 RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS 120
Query: 121 LPSRISTLLGMSLRDVERVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIA 180
LPSRISTLL M+L+DVERVLYFE+Y+V +PGL+SL++ Q+L+EEEY+ AV +FG+DQF A
Sbjct: 121 LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTA 180
Query: 181 MMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMI 240
M+GA+AIYE+L +++L+ +A LR +L++++S ++KK +KRLKIV++F+ SGN P WMI
Sbjct: 181 MIGAEAIYEMLASMNLEKIAGDLRAELAETTSDLKQKKFMKRLKIVENFMESGNRPEWMI 240
Query: 241 IRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRM 300
++ +PV+PPDLRPLV LD GRFA SDLNDLYRRVI RNNRL RL L AP IIIRNEKRM
Sbjct: 241 MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM 300
Query: 301 LQESVDALFDNGRHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAG 360
LQESVDALFDNGR RV+TGAN+RPLKSLSDMLKGKQGRFR NLLGKRVDYSGRSVIV G
Sbjct: 301 LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG 360
Query: 361 PELQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQ 420
PEL+LHQCGLPK MALELFKPF+YA+L+ KGY STVKQAKK VEKE+PEVWD+L EV+ +
Sbjct: 361 PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE 420
Query: 421 HVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQL 480
H VLLNRAP+LHRL +QAFEP ++ GKAIQLHPLVC +NADFDGDQMAV+ +S EAQL
Sbjct: 421 HPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL 480
Query: 481 EARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALE 540
EARVLM+STNN+LHPA+G P+ VPSQDMVLGL YLS +++ +PGEGM F+D+GE++HALE
Sbjct: 481 EARVLMMSTNNILHPANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELHHALE 540
Query: 541 NKIVTLHSKIRGRYKSVDKDGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKN 600
NK+VTLH+KIRGR+K+VD DG +SKI++TTPGRM+IGE+LP++ + FD CNQEM KKN
Sbjct: 541 NKVVTLHAKIRGRFKTVDADGKPVSKIHETTPGRMLIGELLPKNVNVPFDTCNQEMTKKN 600
Query: 601 ISAMVDTIYRHCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKM 660
IS M+DT+YRHCGQK TV FCD +M+LGF +AC +GISFGKDD+++P+SK KI+ + + +
Sbjct: 601 ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSKVKIVGDTEAL 660
Query: 661 VKEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIF 720
VKEYE QYNDGLIT+GEKYNKVVD WGK T+KV EEMMARIK VEFDPETGRQK MNSI+
Sbjct: 661 VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDPETGRQKPMNSIY 720
Query: 721 MMSHSGARGSIHQMRQLGGMRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGL 780
MMSHSGARGS +QMRQLGGMRGL+AKPSGEIIE+PI S+FK GL E+F S G RKGL
Sbjct: 721 MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL 780
Query: 781 LDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRT 840
D ++TA+SGYL+RRLVDVAQ+C+VN VDC T KGLT+T IVD+GQ+V S+G+R+LGRT
Sbjct: 781 ADTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMTAIVDAGQIVASIGARILGRT 840
Query: 841 ALDDIINPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDL 900
ALDDI NP+T E IVKAG LI E+ V IEK GI+SVRIRSALTCE GVC +CYGRDL
Sbjct: 841 ALDDIDNPVTGENIVKAGTLIDEADVAIIEKAGIQSVRIRSALTCEVQIGVCGVCYGRDL 900
Query: 901 ARGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIESPCDGIVKIKNRN 960
ARG+ VN+GEAVGVIAAQSIGEPGTQLTMRTFHLGG V+D+SF+E+ +G ++IKNRN
Sbjct: 901 ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVDQSFLEASYEGTIQIKNRN 960
Query: 961 VCRNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHT 1020
+ RNS LI+MGRN ++ ILD G E+ S R+ YG+K+FVDDG ++ GQR++EWDP+T
Sbjct: 961 ILRNSEGVLIAMGRNMSVTILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLAEWDPYT 1020
Query: 1021 FPIITEVSGTVGFEDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENG 1080
P++TEV GTV FEDLVDG+SV+E+ ESTGI KR+VIDWR R +LKPAI++ D +G
Sbjct: 1021 RPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIIIKDASG 1080
Query: 1081 VVLKSARGTDARWFLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFE 1140
V K +RG +AR+ L VDA+LSV PG KVS GDVLAR P+ SAKTKDIT GLPRVAELFE
Sbjct: 1081 AVAKLSRGGEARFHLSVDAILSVEPGSKVSQGDVLARSPLESAKTKDITGGLPRVAELFE 1140
Query: 1141 ARRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVE 1200
ARRPK+HAI+AEI GTIR+ R+YKNK RV+IEP EDGVEP EY IPK K F+LQ+GD++E
Sbjct: 1141 ARRPKDHAIIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE 1200
Query: 1201 KGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVE 1260
KG+YILDGNP P DIL IKGVEALASYL+NE+QEVYRL+GV IN KHIEV+VR MLQKVE
Sbjct: 1201 KGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE 1260
Query: 1261 ITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASF 1320
ITD D++YI+GDNVDRIE+E++N L ++GKK P+L GITKASLQT SFISAASF
Sbjct: 1261 ITDAGDSQYIVGDNVDRIEMEDMNDRLIEEGKKPAYGEPVLLGITKASLQTPSFISAASF 1320
Query: 1321 QETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRVAMNRDQMILKERSN 1380
QETTKVLTEAAIAGK DTL G KENVIVGR IPAGTG + + RR+A +RD +IL+ER
Sbjct: 1321 QETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILEERRK 1380
Query: 1381 ----FSQNEDLKNTAIQGSIAE 1398
S N+ L++ Q AE
Sbjct: 1381 GTGAGSANQMLQDMTDQVPAAE 1402