PSIBLAST alignment of GI: 254780142 and protein with PDB id: 1i6v

>gi|14278484|pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex Length = 1264
 Score =  358 bits (920), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 122/265 (46%), Positives = 170/265 (64%), Gaps = 4/265 (1%)

Query: 1127 DITSGLPRVAELFEARRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIP 1186
            DIT GLPRV ELFEARRPK  A+++EI G +RI+     + R+ +    +G    EY +P
Sbjct: 991  DITQGLPRVIELFEARRPKAKAVISEIDGVVRIEE---GEDRLSVFVESEGF-SKEYKLP 1046

Query: 1187 KNKHFYLQDGDHVEKGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHK 1246
            K+    ++DGD+VE G  +  G   P  +L  KG EA+  YL++E+Q+VYR +GV ++ K
Sbjct: 1047 KDARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVKLHDK 1106

Query: 1247 HIEVVVRHMLQKVEITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITK 1306
            HIE+VVR ML+ VE+TDP D+  + G  +++ +VE LN  L  +GK  V++ P+L G+TK
Sbjct: 1107 HIEIVVRQMLKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKVPVAWKPLLMGVTK 1166

Query: 1307 ASLQTKSFISAASFQETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRV 1366
            ++L TKS++SAASFQ TT VLTEAAIAGK D L G KENVI+GR IPAGTG+      +V
Sbjct: 1167 SALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQV 1226

Query: 1367 AMNRDQMILKERSNFSQNEDLKNTA 1391
               R    ++E    +     K   
Sbjct: 1227 VDQRTLKAIEEARKEAVEAKEKEAP 1251