PSIBLAST alignment of GI: 254780142 and protein with PDB id: 1i6v
>gi|14278484|pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex Length = 1264
Score = 358 bits (920), Expect = 3e-96, Method: Composition-based stats.
Identities = 122/265 (46%), Positives = 170/265 (64%), Gaps = 4/265 (1%)
Query: 1127 DITSGLPRVAELFEARRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIP 1186
DIT GLPRV ELFEARRPK A+++EI G +RI+ + R+ + +G EY +P
Sbjct: 991 DITQGLPRVIELFEARRPKAKAVISEIDGVVRIEE---GEDRLSVFVESEGF-SKEYKLP 1046
Query: 1187 KNKHFYLQDGDHVEKGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHK 1246
K+ ++DGD+VE G + G P +L KG EA+ YL++E+Q+VYR +GV ++ K
Sbjct: 1047 KDARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVKLHDK 1106
Query: 1247 HIEVVVRHMLQKVEITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITK 1306
HIE+VVR ML+ VE+TDP D+ + G +++ +VE LN L +GK V++ P+L G+TK
Sbjct: 1107 HIEIVVRQMLKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKVPVAWKPLLMGVTK 1166
Query: 1307 ASLQTKSFISAASFQETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRV 1366
++L TKS++SAASFQ TT VLTEAAIAGK D L G KENVI+GR IPAGTG+ +V
Sbjct: 1167 SALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQV 1226
Query: 1367 AMNRDQMILKERSNFSQNEDLKNTA 1391
R ++E + K
Sbjct: 1227 VDQRTLKAIEEARKEAVEAKEKEAP 1251