PSIBLAST alignment of GI: 254780142 and protein with PDB id: 1l9u
gi|21466006|pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 1524
>gi|21466012|pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 1524
Score = 357 bits (917), Expect = 7e-96, Method: Composition-based stats.
Identities = 122/265 (46%), Positives = 170/265 (64%), Gaps = 4/265 (1%)
Query: 1127 DITSGLPRVAELFEARRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIP 1186
DIT GLPRV ELFEARRPK A+++EI G +RI+ + R+ + +G EY +P
Sbjct: 1251 DITQGLPRVIELFEARRPKAKAVISEIDGVVRIEE---GEDRLSVFVESEGF-SKEYKLP 1306
Query: 1187 KNKHFYLQDGDHVEKGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHK 1246
K+ ++DGD+VE G + G P +L KG EA+ YL++E+Q+VYR +GV ++ K
Sbjct: 1307 KDARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVKLHDK 1366
Query: 1247 HIEVVVRHMLQKVEITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITK 1306
HIE+VVR ML+ VE+TDP D+ + G +++ +VE LN L +GK V++ P+L G+TK
Sbjct: 1367 HIEIVVRQMLKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKVPVAWKPLLMGVTK 1426
Query: 1307 ASLQTKSFISAASFQETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRV 1366
++L TKS++SAASFQ TT VLTEAAIAGK D L G KENVI+GR IPAGTG+ +V
Sbjct: 1427 SALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQV 1486
Query: 1367 AMNRDQMILKERSNFSQNEDLKNTA 1391
R ++E + K
Sbjct: 1487 VDQRTLKAIEEARKEAVEAKEKEAP 1511