PSIBLAST alignment of GI: 254780142 and protein with PDB id: 2gho
>gi|109157857|pdb|2GHO|D Chain D, Recombinant Thermus Aquaticus Rna Polymerase For Structural Studies Length = 1233
Score = 358 bits (918), Expect = 4e-96, Method: Composition-based stats.
Identities = 122/265 (46%), Positives = 170/265 (64%), Gaps = 4/265 (1%)
Query: 1127 DITSGLPRVAELFEARRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIP 1186
DIT GLPRV ELFEARRPK A+++EI G +RI+ + R+ + +G EY +P
Sbjct: 960 DITQGLPRVIELFEARRPKAKAVISEIDGVVRIEE---GEDRLSVFVESEGF-SKEYKLP 1015
Query: 1187 KNKHFYLQDGDHVEKGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHK 1246
K+ ++DGD+VE G + G P +L KG EA+ YL++E+Q+VYR +GV ++ K
Sbjct: 1016 KDARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVKLHDK 1075
Query: 1247 HIEVVVRHMLQKVEITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITK 1306
HIE+VVR ML+ VE+TDP D+ + G +++ +VE LN L +GK V++ P+L G+TK
Sbjct: 1076 HIEIVVRQMLKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKVPVAWKPLLMGVTK 1135
Query: 1307 ASLQTKSFISAASFQETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRV 1366
++L TKS++SAASFQ TT VLTEAAIAGK D L G KENVI+GR IPAGTG+ +V
Sbjct: 1136 SALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQV 1195
Query: 1367 AMNRDQMILKERSNFSQNEDLKNTA 1391
R ++E + K
Sbjct: 1196 VDQRTLKAIEEARKEAVEAKEKEAP 1220