PSIBLAST alignment of GI: 254780142 and protein with PDB id: 2pmz
gi|167744881|pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 880
>gi|167744892|pdb|2PMZ|Q Chain Q, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 880
>gi|239782143|pdb|3HKZ|A Chain A, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 880
>gi|239782156|pdb|3HKZ|I Chain I, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 880
Score = 533 bits (1372), Expect = e-148, Method: Composition-based stats.
Identities = 201/926 (21%), Positives = 355/926 (38%), Gaps = 149/926 (16%)
Query: 14 DDRGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECIC 73
++ ++ I SP +I +S I P+ + P + R+
Sbjct: 2 SEKNIKGIKFGILSPDEIRKMSVTAIITPDVYDED-GTPIEGSVMDPRLGVI-------- 52
Query: 74 GKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPW-------FLKSLPSRIS 126
G C CG + HI+L PV H FLK+ R
Sbjct: 53 -------EPGQKCPTCGNTLGNCP---GHFGHIELVRPVIHVGLVKHIYEFLKATCRRCG 102
Query: 127 TLLGMSLRDVERVLYFESYVVVDPGLSSLEKYQILTEEEYVEA-------VSQFGQDQFI 179
+ +S ++E+ Y Y + ++ EYV+ + Q+
Sbjct: 103 RV-KISEDEIEK--YSRIYNAIK-KRWPSAARRL---TEYVKKTAMKAQVCPHCNEKQYK 155
Query: 180 AMMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWM 239
L + +L+ S R +KI + + + + P WM
Sbjct: 156 IK--------LEKPYNFYEERKEGVAKLTPSDIRERLEKIPDSDVEILGYDPTTSRPEWM 207
Query: 240 IIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKR 299
I+ LPV P +RP + ++ G A DL ++ N RL AP++II +
Sbjct: 208 ILTVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDLWD 267
Query: 300 MLQESVDALFDNGRHKRVV-TGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIV 358
+LQ V FDN + RPL++L+ LKGK+GRFR NL GKRVD+S R+VI
Sbjct: 268 LLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVIS 327
Query: 359 AGPELQLHQCGLPKLMALELF-----KPFLYAQLEK---------KGYVSTVKQAKKFVE 404
P + + + G+P+++A L P+ +L + G ++ + ++
Sbjct: 328 PDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDGRRID 387
Query: 405 ----KERPE-------VWDVLAEVVHQHVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHP 453
K+R E + + ++ +VL NR PSLHR+SM A +++ G +L+
Sbjct: 388 LRYVKDRKELASTLAPGYIIERHLIDGDIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNL 447
Query: 454 LVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGLC 513
LVC YNADFDGD+M ++ S EA EA+ +ML N++ P G P+ +QD + G
Sbjct: 448 LVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAY 507
Query: 514 YLSTVHEGDPGE--------GMLFADMGE-VYHA---LENKIVTLHSKIRGRYKSVDKDG 561
L+ E + D+GE A + KD
Sbjct: 508 LLTVKTTLLTKEEAQQILGVADVKIDLGEPAILAPREYYTGKQ-------VISAFLPKDF 560
Query: 562 NSISKIYDTTPGRMIIGEILPR-------HHEISFDICNQEMIKKNISAMV-DTIYRHCG 613
N + ++ R+ E P + + + +++ I + + +
Sbjct: 561 NFHGQANVSSGPRLCKNEDCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYS 620
Query: 614 QKSTVAFCDDLMRLGFRYACSSGISFGKDDI----IVPESKEKIIAEADKMVKEYENQYN 669
+ D+L R+ R+ G + +D+ V + I A V +Y
Sbjct: 621 DEYGKWLMDNLFRVFIRFVELQGFTMRLEDVSLGDDVKKEIYNEIDRAKVEVDNLIQKYK 680
Query: 670 DGLITRGEKYNKVVDLWGKTTDKVTE----EMMARIKRVEFDPETGRQKKMNSIFMMSHS 725
+G ++ + G+T ++ E + + +++ D + N ++M+ +
Sbjct: 681 NG---------ELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMART 731
Query: 726 GARGSIHQMRQLG---GMRGLIAKPSGEIIESP-----------------IRSHFKGGLC 765
GARGS+ + Q+ G + + + + I S F+ GL
Sbjct: 732 GARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLK 791
Query: 766 GFEFFQSCVGGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKK-GLTITHIVD 824
E F GGR+GL+D +RT+ SGY+ RRL++ + + D + + +
Sbjct: 792 PTELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLR-AEYDGTVRSLYGEVVQVAY 850
Query: 825 SGQVVYSLG---------SRVLGRTA 841
V+ + +R+ R
Sbjct: 851 GDDGVFPMYSAHGKTVDVNRIFERVV 876