PSIBLAST alignment of GI: 254780142 and protein with PDB id: 2pmz

gi|167744881|pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 880
>gi|167744892|pdb|2PMZ|Q Chain Q, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 880
>gi|239782143|pdb|3HKZ|A Chain A, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 880
>gi|239782156|pdb|3HKZ|I Chain I, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 880
 Score =  533 bits (1372), Expect = e-148,   Method: Composition-based stats.
 Identities = 201/926 (21%), Positives = 355/926 (38%), Gaps = 149/926 (16%)

Query: 14  DDRGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECIC 73
            ++    ++  I SP +I  +S   I  P+  +     P    +   R+           
Sbjct: 2   SEKNIKGIKFGILSPDEIRKMSVTAIITPDVYDED-GTPIEGSVMDPRLGVI-------- 52

Query: 74  GKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPW-------FLKSLPSRIS 126
                    G  C  CG  +           HI+L  PV H         FLK+   R  
Sbjct: 53  -------EPGQKCPTCGNTLGNCP---GHFGHIELVRPVIHVGLVKHIYEFLKATCRRCG 102

Query: 127 TLLGMSLRDVERVLYFESYVVVDPGLSSLEKYQILTEEEYVEA-------VSQFGQDQFI 179
            +  +S  ++E+  Y   Y  +          ++    EYV+             + Q+ 
Sbjct: 103 RV-KISEDEIEK--YSRIYNAIK-KRWPSAARRL---TEYVKKTAMKAQVCPHCNEKQYK 155

Query: 180 AMMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWM 239
                     L    +          +L+ S    R +KI      +  +  + + P WM
Sbjct: 156 IK--------LEKPYNFYEERKEGVAKLTPSDIRERLEKIPDSDVEILGYDPTTSRPEWM 207

Query: 240 IIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKR 299
           I+  LPV P  +RP + ++ G  A  DL      ++  N RL       AP++II +   
Sbjct: 208 ILTVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDLWD 267

Query: 300 MLQESVDALFDNGRHKRVV-TGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIV 358
           +LQ  V   FDN           + RPL++L+  LKGK+GRFR NL GKRVD+S R+VI 
Sbjct: 268 LLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVIS 327

Query: 359 AGPELQLHQCGLPKLMALELF-----KPFLYAQLEK---------KGYVSTVKQAKKFVE 404
             P + + + G+P+++A  L       P+   +L +          G    ++   + ++
Sbjct: 328 PDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDGRRID 387

Query: 405 ----KERPE-------VWDVLAEVVHQHVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHP 453
               K+R E        + +   ++   +VL NR PSLHR+SM A   +++ G   +L+ 
Sbjct: 388 LRYVKDRKELASTLAPGYIIERHLIDGDIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNL 447

Query: 454 LVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGLC 513
           LVC  YNADFDGD+M ++   S EA  EA+ +ML   N++ P  G P+   +QD + G  
Sbjct: 448 LVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAY 507

Query: 514 YLSTVHEGDPGE--------GMLFADMGE-VYHA---LENKIVTLHSKIRGRYKSVDKDG 561
            L+        E          +  D+GE    A                     + KD 
Sbjct: 508 LLTVKTTLLTKEEAQQILGVADVKIDLGEPAILAPREYYTGKQ-------VISAFLPKDF 560

Query: 562 NSISKIYDTTPGRMIIGEILPR-------HHEISFDICNQEMIKKNISAMV-DTIYRHCG 613
           N   +   ++  R+   E  P        +  +   + +++ I       +   + +   
Sbjct: 561 NFHGQANVSSGPRLCKNEDCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYS 620

Query: 614 QKSTVAFCDDLMRLGFRYACSSGISFGKDDI----IVPESKEKIIAEADKMVKEYENQYN 669
            +      D+L R+  R+    G +   +D+     V +     I  A   V     +Y 
Sbjct: 621 DEYGKWLMDNLFRVFIRFVELQGFTMRLEDVSLGDDVKKEIYNEIDRAKVEVDNLIQKYK 680

Query: 670 DGLITRGEKYNKVVDLWGKTTDKVTE----EMMARIKRVEFDPETGRQKKMNSIFMMSHS 725
           +G         ++  + G+T ++  E    + + +++    D  +      N  ++M+ +
Sbjct: 681 NG---------ELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMART 731

Query: 726 GARGSIHQMRQLG---GMRGLIAKPSGEIIESP-----------------IRSHFKGGLC 765
           GARGS+  + Q+    G + +  +       +                  I S F+ GL 
Sbjct: 732 GARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLK 791

Query: 766 GFEFFQSCVGGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKK-GLTITHIVD 824
             E F    GGR+GL+D  +RT+ SGY+ RRL++   +    + D   +     +  +  
Sbjct: 792 PTELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLR-AEYDGTVRSLYGEVVQVAY 850

Query: 825 SGQVVYSLG---------SRVLGRTA 841
               V+ +          +R+  R  
Sbjct: 851 GDDGVFPMYSAHGKTVDVNRIFERVV 876