PSIBLAST alignment of GI: 254780142 and protein with PDB id: 3h0g

gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1752
>gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1752
 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1531 (18%), Positives = 536/1531 (35%), Gaps = 239/1531 (15%)

Query: 4    EVMRFFNPWTDDRGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIF 63
              ++F       R  + V+  I SP +I S+S  +I+ PET++    +P   GL   R+ 
Sbjct: 2    SGIQFSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLG 61

Query: 64   GPIKDYECICGKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFL---KS 120
               + ++               C+ CG  +           HI+LA PV H  FL   K 
Sbjct: 62   TIDRQFK---------------CQTCGETMADCP---GHFGHIELAKPVFHIGFLSKIKK 103

Query: 121  LPSRISTLLGMSLRDVERVLYFESYVVVDPG-----LSSLEKYQILTEEEYVEAVSQFGQ 175
            +   +    G    D     + ++    DP      + ++ K +++ +         F  
Sbjct: 104  ILECVCWNCGKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDL 163

Query: 176  DQFIAMMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSF------ 229
                A MG          +    L L    +  K  S    K+++  L++   F      
Sbjct: 164  SNPSANMGHGGCGAAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSPLEVHTIFTHISSE 223

Query: 230  -------ITSGNNPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLM 282
                         P WMII  LPV PP +RP +++D       DL      +I  N  + 
Sbjct: 224  DLAHLGLNEQYARPDWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVR 283

Query: 283  RLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRVVT-GANRRPLKSLSDMLKGKQGRFR 341
            R +   AP  I+   +++LQ  V    DN    +      + RPLKS+   LKGK+GR R
Sbjct: 284  RCEQEGAPAHIVSEYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLR 343

Query: 342  TNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKK----------- 390
             NL+GKRVD+S R+VI   P L L + G+P+ +A  L  P                    
Sbjct: 344  GNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPD 403

Query: 391  ------------GYVSTVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQA 438
                        G    ++  K+  +      W V   +    VV+ NR PSLH++SM  
Sbjct: 404  EHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMG 463

Query: 439  FEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASG 498
               +++     +L+  V + YNADFDGD+M ++   S E + E + + +    ++ P S 
Sbjct: 464  HRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSN 523

Query: 499  APVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHAL-----ENKIVTLHSKIRGR 553
             PV    QD + G+   S            F     V + +      + I+     ++ +
Sbjct: 524  KPVMGIVQDTLAGVRKFSLRDN--------FLTRNAVMNIMLWVPDWDGILPPPVILKPK 575

Query: 554  YKSVDKDGNSISKIYDTTPGRMIIGE------------ILPRHHEISFDICNQEMIKKNI 601
                   G  I  +       +I  +            +L  + EI + + +++ +  + 
Sbjct: 576  VLWT---GKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQ 632

Query: 602  SAMVDTIYRHCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMV 661
              +V TI++  G +    F + + R+   +   +G S G  D I      K +    K  
Sbjct: 633  GGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEA 692

Query: 662  KEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDP----ETGRQKKMN 717
            +            +  ++N++    G T  +  E  ++RI     D          K  N
Sbjct: 693  RR-----QVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSN 747

Query: 718  SIFMMSHSGARGSIHQMRQ---LGGMRGLIAKPSGEIIESP-----------------IR 757
            ++  M  +G++GS   + Q     G + +  K      +                   I 
Sbjct: 748  NVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIE 807

Query: 758  SHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGL 817
            + +  GL   EFF   + GR+GL+D  ++TA +GY+ RRLV   ++ +V   D   +  +
Sbjct: 808  NSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVR-YDGTVRNAM 866

Query: 818  ---------------------------TITHIVDSGQVVYSLGSR---------VLGRTA 841
                                         T   +    +  +  R         +   ++
Sbjct: 867  GDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIENDSS 926

Query: 842  LDDIINPLTNECIVKA---GQLILES--------------HVNEIEKCGIRSVRIRSALT 884
            + D+++    + +       + I                   N ++   + + +    L 
Sbjct: 927  VQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLP 986

Query: 885  CESSRGVCVL------CYGRDLARGSLVNVGEAVGVIAAQS---IGEPGTQLTMRTF--- 932
             +   G+  L        G D     + N    +  I  +S   +     +  +      
Sbjct: 987  SDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFE 1046

Query: 933  HLGGAVTVMDRSFIESPCDGIVKIKNRNVCRNSTN------DLISMGRNTTLQILDMSGQ 986
             + G V    +  + SP + +  +  +++   +T           +        +    +
Sbjct: 1047 WIMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKE 1106

Query: 987  EQYSHRIMYGAKLFVDDGGVIECGQRIS---EWDPHTFPIITEVSGTVGFEDLVDGISVI 1043
                 + +    L +     I     ++   +       + T  S T    D     +VI
Sbjct: 1107 ILNVAKNIKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVI 1166

Query: 1044 ESIGESTGIAKRKVIDWRFASRSQNLKP---AIVVTDENGVVLKSARGTDARWFLPVDAL 1100
            E   +    A   + D           P    + +     +  K +    A         
Sbjct: 1167 EE-DKDFVEAFFAIPDEEVEENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFER 1225

Query: 1101 LSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFEARRPKNHAILA-EISGTIRI 1159
               +   + +   ++ R  I     +        + E    +  + H + +  + G   I
Sbjct: 1226 DLFTIWSEDNADKLIIRCRIIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNI 1285

Query: 1160 KRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYILDGNPVPQDILRIK 1219
             R Y  + ++V +  +   E A+ ++ +     L +   VE  D     +    +IL+I 
Sbjct: 1286 TRVYMMEHKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQIL 1345

Query: 1220 GVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPADTEYILGDNVDRIE 1279
            G+EA  S L+ E++ V   +G  +N++H+ ++   M  +  +        I    ++R E
Sbjct: 1346 GIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLM------AITRHGINRAE 1399

Query: 1280 VEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKVLTEAAIAGKVDTL 1339
               L R                                 SF+ET ++L +AA +G+ D  
Sbjct: 1400 TGALMR--------------------------------CSFEETVEILMDAAASGEKDDC 1427

Query: 1340 DGFKENVIVGRSIPAGTGAI-LHEKRRVAMN 1369
             G  EN+++G+  P GTGA  ++  + + MN
Sbjct: 1428 KGISENIMLGQLAPMGTGAFDIYLDQDMLMN 1458