PSIBLAST alignment of GI: 254780142 and protein with PDB id: 3h0g
gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1752
>gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1752
Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats.
Identities = 284/1531 (18%), Positives = 536/1531 (35%), Gaps = 239/1531 (15%)
Query: 4 EVMRFFNPWTDDRGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIF 63
++F R + V+ I SP +I S+S +I+ PET++ +P GL R+
Sbjct: 2 SGIQFSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLG 61
Query: 64 GPIKDYECICGKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFL---KS 120
+ ++ C+ CG + HI+LA PV H FL K
Sbjct: 62 TIDRQFK---------------CQTCGETMADCP---GHFGHIELAKPVFHIGFLSKIKK 103
Query: 121 LPSRISTLLGMSLRDVERVLYFESYVVVDPG-----LSSLEKYQILTEEEYVEAVSQFGQ 175
+ + G D + ++ DP + ++ K +++ + F
Sbjct: 104 ILECVCWNCGKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDL 163
Query: 176 DQFIAMMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSF------ 229
A MG + L L + K S K+++ L++ F
Sbjct: 164 SNPSANMGHGGCGAAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSPLEVHTIFTHISSE 223
Query: 230 -------ITSGNNPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLM 282
P WMII LPV PP +RP +++D DL +I N +
Sbjct: 224 DLAHLGLNEQYARPDWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVR 283
Query: 283 RLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRVVT-GANRRPLKSLSDMLKGKQGRFR 341
R + AP I+ +++LQ V DN + + RPLKS+ LKGK+GR R
Sbjct: 284 RCEQEGAPAHIVSEYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLR 343
Query: 342 TNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKK----------- 390
NL+GKRVD+S R+VI P L L + G+P+ +A L P
Sbjct: 344 GNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPD 403
Query: 391 ------------GYVSTVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQA 438
G ++ K+ + W V + VV+ NR PSLH++SM
Sbjct: 404 EHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMG 463
Query: 439 FEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASG 498
+++ +L+ V + YNADFDGD+M ++ S E + E + + + ++ P S
Sbjct: 464 HRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSN 523
Query: 499 APVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHAL-----ENKIVTLHSKIRGR 553
PV QD + G+ S F V + + + I+ ++ +
Sbjct: 524 KPVMGIVQDTLAGVRKFSLRDN--------FLTRNAVMNIMLWVPDWDGILPPPVILKPK 575
Query: 554 YKSVDKDGNSISKIYDTTPGRMIIGE------------ILPRHHEISFDICNQEMIKKNI 601
G I + +I + +L + EI + + +++ + +
Sbjct: 576 VLWT---GKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQ 632
Query: 602 SAMVDTIYRHCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMV 661
+V TI++ G + F + + R+ + +G S G D I K + K
Sbjct: 633 GGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEA 692
Query: 662 KEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDP----ETGRQKKMN 717
+ + ++N++ G T + E ++RI D K N
Sbjct: 693 RR-----QVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSN 747
Query: 718 SIFMMSHSGARGSIHQMRQ---LGGMRGLIAKPSGEIIESP-----------------IR 757
++ M +G++GS + Q G + + K + I
Sbjct: 748 NVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIE 807
Query: 758 SHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGL 817
+ + GL EFF + GR+GL+D ++TA +GY+ RRLV ++ +V D + +
Sbjct: 808 NSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVR-YDGTVRNAM 866
Query: 818 ---------------------------TITHIVDSGQVVYSLGSR---------VLGRTA 841
T + + + R + ++
Sbjct: 867 GDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIENDSS 926
Query: 842 LDDIINPLTNECIVKA---GQLILES--------------HVNEIEKCGIRSVRIRSALT 884
+ D+++ + + + I N ++ + + + L
Sbjct: 927 VQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLP 986
Query: 885 CESSRGVCVL------CYGRDLARGSLVNVGEAVGVIAAQS---IGEPGTQLTMRTF--- 932
+ G+ L G D + N + I +S + + +
Sbjct: 987 SDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFE 1046
Query: 933 HLGGAVTVMDRSFIESPCDGIVKIKNRNVCRNSTN------DLISMGRNTTLQILDMSGQ 986
+ G V + + SP + + + +++ +T + + +
Sbjct: 1047 WIMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKE 1106
Query: 987 EQYSHRIMYGAKLFVDDGGVIECGQRIS---EWDPHTFPIITEVSGTVGFEDLVDGISVI 1043
+ + L + I ++ + + T S T D +VI
Sbjct: 1107 ILNVAKNIKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVI 1166
Query: 1044 ESIGESTGIAKRKVIDWRFASRSQNLKP---AIVVTDENGVVLKSARGTDARWFLPVDAL 1100
E + A + D P + + + K + A
Sbjct: 1167 EE-DKDFVEAFFAIPDEEVEENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFER 1225
Query: 1101 LSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFEARRPKNHAILA-EISGTIRI 1159
+ + + ++ R I + + E + + H + + + G I
Sbjct: 1226 DLFTIWSEDNADKLIIRCRIIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNI 1285
Query: 1160 KRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYILDGNPVPQDILRIK 1219
R Y + ++V + + E A+ ++ + L + VE D + +IL+I
Sbjct: 1286 TRVYMMEHKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQIL 1345
Query: 1220 GVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPADTEYILGDNVDRIE 1279
G+EA S L+ E++ V +G +N++H+ ++ M + + I ++R E
Sbjct: 1346 GIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLM------AITRHGINRAE 1399
Query: 1280 VEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKVLTEAAIAGKVDTL 1339
L R SF+ET ++L +AA +G+ D
Sbjct: 1400 TGALMR--------------------------------CSFEETVEILMDAAASGEKDDC 1427
Query: 1340 DGFKENVIVGRSIPAGTGAI-LHEKRRVAMN 1369
G EN+++G+ P GTGA ++ + + MN
Sbjct: 1428 KGISENIMLGQLAPMGTGAFDIYLDQDMLMN 1458