RPSBLAST alignment for GI: 254780142 and conserved domain: cd02736
>gnl|CDD|132723 cd02736, RNAP_III_Rpc1_C, Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain. Eukaryotic RNA polymerase III (RNAP III) is a large multi-subunit complex responsible for the synthesis of tRNAs, 5SrRNA, Alu-RNA, U6 snRNA, among others. Rpc1 is also known as C160 in yeast. Structure studies suggest that different RNA polymerase complexes share a similar crab-claw-shape structure. The C-terminal domain of Rpb1, the largest subunit of RNAP II, makes up part of the foot and jaw structures of RNAP II. The similarity between this domain and the C-terminal domain of Rpb1, its counterpart in RNAP II, suggests a similar functional and structural role. Length = 300
Score = 58.8 bits (143), Expect = 1e-08
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 38/146 (26%)
Query: 1214 DILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPADTEYILGD 1273
++ ++ G+EA S +INE+Q + G++I+ +HI ++ M K E+ LG
Sbjct: 193 EVEKVLGIEAARSTIINEIQYTMKSHGMSIDPRHIMLLADLMTFKGEV---------LG- 242
Query: 1274 NVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKVLTEAAIA 1333
+ R GI K +S + ASF++TT L AA+
Sbjct: 243 ---------ITR----------------FGIAKMK---ESVLMLASFEKTTDHLFNAALH 274
Query: 1334 GKVDTLDGFKENVIVGRSIPAGTGAI 1359
G+ D+++G E +I+G+ +P GTG
Sbjct: 275 GRKDSIEGVSECIIMGKPMPIGTGLF 300