RPSBLAST alignment for GI: 254780142 and conserved domain: pfam00623
>gnl|CDD|144278 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2. RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site. The invariant motif -NADFDGD- binds the active site magnesium ion. Length = 165
Score = 210 bits (538), Expect = 2e-54
Identities = 73/165 (44%), Positives = 100/165 (60%), Gaps = 22/165 (13%)
Query: 346 GKRVDYSGRSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKKG-------------- 391
GKRVD+SGRSVI P L+L + G+P MALEL KP + +L K
Sbjct: 1 GKRVDFSGRSVITPDPNLKLDEVGVPIEMALELTKPEIVTKLNIKKLRKLVSNGPNVPPG 60
Query: 392 --YVSTVKQAKKFVEKER---PEVW---DVLAEVVHQHVVLLNRAPSLHRLSMQAFEPKI 443
Y+ +K AK+ +E ++ E+W VL V+ VVLLNR P+LHR+S+ A P++
Sbjct: 61 AKYIKRIKGAKRDLEYKKRIAIELWYGDIVLRHVIDGDVVLLNRQPTLHRMSIMAHRPRV 120
Query: 444 ISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLS 488
+ GK I+L+P VC+ YNADFDGD+M ++ S EA+ EAR LML
Sbjct: 121 LEGKTIRLNPSVCSPYNADFDGDEMNLHVPQSEEARAEARELMLV 165