RPSBLAST alignment for GI: 254780142 and conserved domain: TIGR02386
>gnl|CDD|162830 TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, beta' subunit, predominant form. Bacteria have a single DNA-directed RNA polymerase, with required subunits that include alpha, beta, and beta-prime. This model describes the predominant architecture of the beta-prime subunit in most bacteria. This model excludes from among the bacterial mostly sequences from the cyanobacteria, where RpoC is replaced by two tandem genes homologous to it but also encoding an additional domain. Length = 1140
Score = 1335 bits (3458), Expect = 0.0
Identities = 551/1023 (53%), Positives = 707/1023 (69%), Gaps = 56/1023 (5%)
Query: 20 SVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGKYKRM 79
+++ISIASP I + SYGE+KKPETINYRT KPE+DGLFC +IFGP KD+EC CGKYK++
Sbjct: 1 AIKISIASPDTIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECYCGKYKKI 60
Query: 80 KYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRDVERV 139
+YKG++CE+CGVEVT S VRR+RM HI+LA+PVAH W+ K LPSRI LL ++ +++E V
Sbjct: 61 RYKGVVCERCGVEVTESKVRRERMGHIELAAPVAHIWYFKGLPSRIGLLLDITAKELESV 120
Query: 140 LYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELLIALDLQNL 199
LYFE+YVV+DPG + L+K ++L E EY E + ++G D F A MGA+AI ELL +DL
Sbjct: 121 LYFENYVVLDPGDTKLDKKEVLDETEYREVLKRYG-DGFRAGMGAEAIKELLEKIDLDKE 179
Query: 200 ALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLVALDF 259
L+ QL +S S +RKK++KRL+IV++F SGN P WM++ +PV+PP+LRP+V LD
Sbjct: 180 IEELKIQLRESKSDQKRKKLLKRLEIVEAFKDSGNRPEWMVLDVIPVIPPELRPMVQLDG 239
Query: 260 GRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRVVT 319
GRFA SDLNDLYRRVI RNNRL RL L APEII+RNEKRMLQE+VDALFDNGR + V
Sbjct: 240 GRFATSDLNDLYRRVINRNNRLKRLLELGAPEIIVRNEKRMLQEAVDALFDNGRRGKPVV 299
Query: 320 GANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELF 379
G N RPLKSLSDMLKGKQGRFR NLLGKRVDYSGRSVIV GPEL+++QCGLPK MALELF
Sbjct: 300 GKNNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKKMALELF 359
Query: 380 KPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQAF 439
KPF+ +L + + +K AKK +E+E PEVWDVL +V+ +H VLLNRAP+LHRL +QAF
Sbjct: 360 KPFIIKRLIDRELAANIKSAKKMIEQEDPEVWDVLEDVIKEHPVLLNRAPTLHRLGIQAF 419
Query: 440 EPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGA 499
EP ++ GKAI+LHPLVC +NADFDGDQMAV+ +SPEAQ EAR LML++NN+L+P G
Sbjct: 420 EPVLVEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSPEAQAEARALMLASNNILNPKDGK 479
Query: 500 PVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALENKIVTLHSKIRGRYKSVDK 559
P+ PSQDMVLGL YL+T G GEG +F+++ E A +N V LH+ I R
Sbjct: 480 PIVTPSQDMVLGLYYLTTEKPGAKGEGKIFSNVDEAIRAYDNGKVHLHALIGVRTS---- 535
Query: 560 DGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYRHCGQKSTVA 619
+I +TT GR+I EILP D N+ + KK IS+++D +Y G + T
Sbjct: 536 -----GEILETTVGRVIFNEILPEGFPYIND--NEPLSKKEISSLIDLLYEVHGIEETAE 588
Query: 620 FCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQYNDGLITRGEKY 679
D + LGF+YA SG + DI+VP+ K +I+ EADK V + + YN GLIT E+Y
Sbjct: 589 MLDKIKALGFKYATKSGTTISASDIVVPDEKYEILKEADKEVAKIQKFYNKGLITDEERY 648
Query: 680 NKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIFMMSHSGARGSIHQMRQLGG 739
KVV +W +T DKVT+ MM +K+ K N IFMM+ SGARG+I Q RQL G
Sbjct: 649 RKVVSIWSETKDKVTDAMMKLLKK--------DTYKFNPIFMMADSGARGNISQFRQLAG 700
Query: 740 MRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASSGYLSRRLVD 799
MRGL+AKPSG+IIE PI+S F+ GL E+F S G RKGL D ++TA SGYL+RRLVD
Sbjct: 701 MRGLMAKPSGDIIELPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVD 760
Query: 800 VAQNCVVNQVDCNTKKGLTITHIVD-SGQVVYSLGSRVLGRTALDDIINPLTNECIVKAG 858
VAQ+ VV + DC T++G+ + IV+ +++ SL R++GR + +D+ +P T + I +A
Sbjct: 761 VAQDVVVREEDCGTEEGIEVEAIVEGKDEIIESLKDRIVGRYSAEDVYDPDTGKLIAEAN 820
Query: 859 QLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLARGSLVNVGEAVGVIAAQ 918
LI E +IE GI V++RS LTCES GVC CYGRDLA G LV +GEAVGVIAAQ
Sbjct: 821 TLITEEIAEKIENSGIEKVKVRSVLTCESEHGVCQKCYGRDLATGKLVEIGEAVGVIAAQ 880
Query: 919 SIGEPGTQLTMRTFHLGG--------------------AVTVMDRSFIESPCDGIVKIKN 958
SIGEPGTQLTMRTFH GG A T D++ I + DG V+I
Sbjct: 881 SIGEPGTQLTMRTFHTGGVAGASGDITQGLPRVKELFEARTPKDKAVI-AEVDGTVEIIE 939
Query: 959 RNVCRNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISE--W 1016
V +N + I D + E+ + I +GA+L V DG + G +++E
Sbjct: 940 DIV-KNKRV----------VVIKDEND-EEKKYTIPFGAQLRVKDGDSVSAGDKLTEGSI 987
Query: 1017 DPH 1019
DPH
Sbjct: 988 DPH 990