RPSBLAST alignment for GI: 254780142 and conserved domain: TIGR02386

>gnl|CDD|162830 TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, beta' subunit, predominant form. Bacteria have a single DNA-directed RNA polymerase, with required subunits that include alpha, beta, and beta-prime. This model describes the predominant architecture of the beta-prime subunit in most bacteria. This model excludes from among the bacterial mostly sequences from the cyanobacteria, where RpoC is replaced by two tandem genes homologous to it but also encoding an additional domain. Length = 1140
 Score = 1335 bits (3458), Expect = 0.0
 Identities = 551/1023 (53%), Positives = 707/1023 (69%), Gaps = 56/1023 (5%)

Query: 20   SVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGKYKRM 79
            +++ISIASP  I + SYGE+KKPETINYRT KPE+DGLFC +IFGP KD+EC CGKYK++
Sbjct: 1    AIKISIASPDTIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECYCGKYKKI 60

Query: 80   KYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRDVERV 139
            +YKG++CE+CGVEVT S VRR+RM HI+LA+PVAH W+ K LPSRI  LL ++ +++E V
Sbjct: 61   RYKGVVCERCGVEVTESKVRRERMGHIELAAPVAHIWYFKGLPSRIGLLLDITAKELESV 120

Query: 140  LYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELLIALDLQNL 199
            LYFE+YVV+DPG + L+K ++L E EY E + ++G D F A MGA+AI ELL  +DL   
Sbjct: 121  LYFENYVVLDPGDTKLDKKEVLDETEYREVLKRYG-DGFRAGMGAEAIKELLEKIDLDKE 179

Query: 200  ALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLVALDF 259
               L+ QL +S S  +RKK++KRL+IV++F  SGN P WM++  +PV+PP+LRP+V LD 
Sbjct: 180  IEELKIQLRESKSDQKRKKLLKRLEIVEAFKDSGNRPEWMVLDVIPVIPPELRPMVQLDG 239

Query: 260  GRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRVVT 319
            GRFA SDLNDLYRRVI RNNRL RL  L APEII+RNEKRMLQE+VDALFDNGR  + V 
Sbjct: 240  GRFATSDLNDLYRRVINRNNRLKRLLELGAPEIIVRNEKRMLQEAVDALFDNGRRGKPVV 299

Query: 320  GANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELF 379
            G N RPLKSLSDMLKGKQGRFR NLLGKRVDYSGRSVIV GPEL+++QCGLPK MALELF
Sbjct: 300  GKNNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKKMALELF 359

Query: 380  KPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQAF 439
            KPF+  +L  +   + +K AKK +E+E PEVWDVL +V+ +H VLLNRAP+LHRL +QAF
Sbjct: 360  KPFIIKRLIDRELAANIKSAKKMIEQEDPEVWDVLEDVIKEHPVLLNRAPTLHRLGIQAF 419

Query: 440  EPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGA 499
            EP ++ GKAI+LHPLVC  +NADFDGDQMAV+  +SPEAQ EAR LML++NN+L+P  G 
Sbjct: 420  EPVLVEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSPEAQAEARALMLASNNILNPKDGK 479

Query: 500  PVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALENKIVTLHSKIRGRYKSVDK 559
            P+  PSQDMVLGL YL+T   G  GEG +F+++ E   A +N  V LH+ I  R      
Sbjct: 480  PIVTPSQDMVLGLYYLTTEKPGAKGEGKIFSNVDEAIRAYDNGKVHLHALIGVRTS---- 535

Query: 560  DGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYRHCGQKSTVA 619
                  +I +TT GR+I  EILP       D  N+ + KK IS+++D +Y   G + T  
Sbjct: 536  -----GEILETTVGRVIFNEILPEGFPYIND--NEPLSKKEISSLIDLLYEVHGIEETAE 588

Query: 620  FCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQYNDGLITRGEKY 679
              D +  LGF+YA  SG +    DI+VP+ K +I+ EADK V + +  YN GLIT  E+Y
Sbjct: 589  MLDKIKALGFKYATKSGTTISASDIVVPDEKYEILKEADKEVAKIQKFYNKGLITDEERY 648

Query: 680  NKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIFMMSHSGARGSIHQMRQLGG 739
             KVV +W +T DKVT+ MM  +K+           K N IFMM+ SGARG+I Q RQL G
Sbjct: 649  RKVVSIWSETKDKVTDAMMKLLKK--------DTYKFNPIFMMADSGARGNISQFRQLAG 700

Query: 740  MRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASSGYLSRRLVD 799
            MRGL+AKPSG+IIE PI+S F+ GL   E+F S  G RKGL D  ++TA SGYL+RRLVD
Sbjct: 701  MRGLMAKPSGDIIELPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVD 760

Query: 800  VAQNCVVNQVDCNTKKGLTITHIVD-SGQVVYSLGSRVLGRTALDDIINPLTNECIVKAG 858
            VAQ+ VV + DC T++G+ +  IV+   +++ SL  R++GR + +D+ +P T + I +A 
Sbjct: 761  VAQDVVVREEDCGTEEGIEVEAIVEGKDEIIESLKDRIVGRYSAEDVYDPDTGKLIAEAN 820

Query: 859  QLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLARGSLVNVGEAVGVIAAQ 918
             LI E    +IE  GI  V++RS LTCES  GVC  CYGRDLA G LV +GEAVGVIAAQ
Sbjct: 821  TLITEEIAEKIENSGIEKVKVRSVLTCESEHGVCQKCYGRDLATGKLVEIGEAVGVIAAQ 880

Query: 919  SIGEPGTQLTMRTFHLGG--------------------AVTVMDRSFIESPCDGIVKIKN 958
            SIGEPGTQLTMRTFH GG                    A T  D++ I +  DG V+I  
Sbjct: 881  SIGEPGTQLTMRTFHTGGVAGASGDITQGLPRVKELFEARTPKDKAVI-AEVDGTVEIIE 939

Query: 959  RNVCRNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISE--W 1016
              V +N             + I D +  E+  + I +GA+L V DG  +  G +++E   
Sbjct: 940  DIV-KNKRV----------VVIKDEND-EEKKYTIPFGAQLRVKDGDSVSAGDKLTEGSI 987

Query: 1017 DPH 1019
            DPH
Sbjct: 988  DPH 990