>gnl|CDD|162830 TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, beta' subunit, predominant form. Bacteria have a single DNA-directed RNA polymerase, with required subunits that include alpha, beta, and beta-prime. This model describes the predominant architecture of the beta-prime subunit in most bacteria. This model excludes from among the bacterial mostly sequences from the cyanobacteria, where RpoC is replaced by two tandem genes homologous to it but also encoding an additional domain. Length = 1140

Score = 321 bits (824), Expect = 1e-87 Identities = 134/244 (54%), Positives = 170/244 (69%), Gaps = 3/244 (1%) Query: 1121 SSAKTKDITSGLPRVAELFEARRPKNHAILAEISGTIRIKRN-YKNKSRVVIEPFEDGVE 1179 + + DIT GLPRV ELFEAR PK+ A++AE+ GT+ I + KNK VVI+ D E Sbjct: 899 VAGASGDITQGLPRVKELFEARTPKDKAVIAEVDGTVEIIEDIVKNKRVVVIKDEND--E 956 Query: 1180 PAEYFIPKNKHFYLQDGDHVEKGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLE 1239 +Y IP ++DGD V GD + +G+ P D+LRIKG++A+ YL+ EVQ+VYRL+ Sbjct: 957 EKKYTIPFGAQLRVKDGDSVSAGDKLTEGSIDPHDLLRIKGIQAVQEYLVKEVQKVYRLQ 1016 Query: 1240 GVAINHKHIEVVVRHMLQKVEITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSP 1299 GV IN KHIEV+VR ML+KV ITD D+ + G+ +D E E NR L +QGKK S P Sbjct: 1017 GVEINDKHIEVIVRQMLRKVRITDSGDSNLLPGELIDIHEFNEENRKLLEQGKKPASAIP 1076 Query: 1300 ILQGITKASLQTKSFISAASFQETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAI 1359 L GITKASL T+SF+SAASFQETTKVLT+AAI GKVD L G KENVI+G IPAGTG Sbjct: 1077 QLLGITKASLNTESFLSAASFQETTKVLTDAAIKGKVDYLLGLKENVIIGNLIPAGTGLK 1136 Query: 1360 LHEK 1363 +++ Sbjct: 1137 TYKE 1140

RPSBLAST alignment for GI: 254780142 and conserved domain: TIGR02386