RPSBLAST alignment for GI: 254780142 and conserved domain: PRK14844
>gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional. Length = 2836
Score = 1596 bits (4133), Expect = 0.0
Identities = 752/1356 (55%), Positives = 995/1356 (73%), Gaps = 10/1356 (0%)
Query: 16 RGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGK 75
+ F+ V ISIASP I +SYGEI+ T NYRTFK E+ GLFC +IFGP+ D EC+CGK
Sbjct: 1446 QSFNEVSISIASPESIKRMSYGEIEDVSTANYRTFKVEKGGLFCPKIFGPVNDDECLCGK 1505
Query: 76 YKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRD 135
YK+ +++G ICEKCGVEVT S VRR+RM HI+LASPVAH WFLKSLPSRI LL MSLRD
Sbjct: 1506 YKKRRHRGRICEKCGVEVTSSKVRRERMGHIELASPVAHIWFLKSLPSRIGALLDMSLRD 1565
Query: 136 VERVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELLIALD 195
+E +LY ++Y+V+DP +S EK +I++E+ Y EA +G D F+AM G +AI ELL LD
Sbjct: 1566 IENILYSDNYIVIDPLVSPFEKGEIISEKAYNEAKDSYGIDSFVAMQGVEAIRELLTRLD 1625
Query: 196 LQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLV 255
L + LR +L +S RRKKIIKRL+IV++FI SGN P WMI+ +P+LPPDLRPLV
Sbjct: 1626 LHEIRKDLRLELESVASEIRRKKIIKRLRIVENFIKSGNRPEWMILTTIPILPPDLRPLV 1685
Query: 256 ALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHK 315
+L+ GR A SDLN YR +I RNNRL +L SL+ PEI+IRNEKRMLQE+VD+LFDN R
Sbjct: 1686 SLESGRPAVSDLNHHYRTIINRNNRLRKLLSLNPPEIMIRNEKRMLQEAVDSLFDNSRRN 1745
Query: 316 RVVTGANRRPL-KSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLM 374
+V A KS+SDMLKGKQGRFR NLLGKRVDYSGRSVIV GP L+L+QCGLPK M
Sbjct: 1746 ALVNKAGAVGYKKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLKLNQCGLPKRM 1805
Query: 375 ALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRL 434
ALELFKPF+Y++L+ G T+K A K + E+PEVWD+L EV+ +H VLLNRAP+LHRL
Sbjct: 1806 ALELFKPFVYSKLKMYGMAPTIKFASKLIRAEKPEVWDMLEEVIKEHPVLLNRAPTLHRL 1865
Query: 435 SMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLH 494
+QAFEP +I GKAIQLHPLVC +NADFDGDQMAV+ IS EAQLEARVLM+STNN+L
Sbjct: 1866 GIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPISLEAQLEARVLMMSTNNVLS 1925
Query: 495 PASGAPVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALENKIVTLHSKIRGRY 554
P++G P+ VPS+D+VLG+ YL T+ E + F EV H+L + + +HS I+ R
Sbjct: 1926 PSNGRPIIVPSKDIVLGIYYL-TLQEPKEDDLPSFGAFCEVEHSLSDGTLHIHSSIKYRM 1984
Query: 555 KSVDKDGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYRHCGQ 614
+ ++ G + K TTPGR+I+ +I P+H + FD+ NQ + K I+++VD +YR+CGQ
Sbjct: 1985 EYINSSGETHYKTICTTPGRLILWQIFPKHENLGFDLINQVLTVKEITSIVDLVYRNCGQ 2044
Query: 615 KSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQYNDGLIT 674
+TVAF D LM LGF YA SG+SF + D+++PE+K + A +K++ QY DGLIT
Sbjct: 2045 SATVAFSDKLMVLGFEYATFSGVSFSRCDMVIPETKATHVDHARGEIKKFSMQYQDGLIT 2104
Query: 675 RGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIFMMSHSGARGSIHQM 734
R E+YNKV+D W K TD + +M+ I + K NS++MM +SGARGS QM
Sbjct: 2105 RSERYNKVIDEWSKCTDMIANDMLKAISIYD------GNSKYNSVYMMVNSGARGSTSQM 2158
Query: 735 RQLGGMRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASSGYLS 794
+QL GMRGL+ KPSGEIIE+PI S+F+ GL FE+F S G RKGL D ++TA+SGYL+
Sbjct: 2159 KQLAGMRGLMTKPSGEIIETPIISNFREGLNVFEYFNSTHGARKGLADTALKTANSGYLT 2218
Query: 795 RRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRTALDDIINPLTNECI 854
RRLVDV+QNC+V + DC TK GL + V+ +V SL S VLGRTA +DI NP+T E +
Sbjct: 2219 RRLVDVSQNCIVTKHDCKTKNGLVVRATVEGSTIVASLESVVLGRTAANDIYNPVTKELL 2278
Query: 855 VKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLARGSLVNVGEAVGV 914
VKAG+LI E V +I G+ V+IRS LTCE S GVC LCYGRDLA G +V++GEAVGV
Sbjct: 2279 VKAGELIDEDKVKQINIAGLDVVKIRSPLTCEISPGVCSLCYGRDLATGKIVSIGEAVGV 2338
Query: 915 IAAQSIGEPGTQLTMRTFHLGGAVTV-MDRSFIESPCDGIVKIKNRNVCRNSTNDLISMG 973
IAAQS+GEPGTQLTMRTFH+GG +T ++ S I + + +K+ N N+ + + I +
Sbjct: 2339 IAAQSVGEPGTQLTMRTFHIGGVMTRGVESSNIIASINAKIKLNNSNIIIDKNGNKIVIS 2398
Query: 974 RNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHTFPIITEVSGTVGF 1033
R+ + ++D G E+ H + YGAKL+VD+GG ++ G +++EWDP+T PIITE +GTV +
Sbjct: 2399 RSCEVVLIDSLGSEKLKHSVPYGAKLYVDEGGSVKIGDKVAEWDPYTLPIITEKTGTVSY 2458
Query: 1034 EDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENGVVLKSARGTDARW 1093
+DL DGIS+ E + ESTGI+ + V DW+ S NL+P IV+ D+NG V+ A G +A +
Sbjct: 2459 QDLKDGISITEVMDESTGISSKVVKDWKLYSGGANLRPRIVLLDDNGKVMTLASGVEACY 2518
Query: 1094 FLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFEARRPKNHAILAEI 1153
F+P+ A+L+V GQKV GDV+ R P S KT+DIT GLPRV ELFEARRPK HAI++EI
Sbjct: 2519 FIPIGAVLNVQDGQKVHAGDVITRTPRESVKTRDITGGLPRVIELFEARRPKEHAIVSEI 2578
Query: 1154 SGTIRI-KRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYILDGNPVP 1212
G + +++ + K ++I+P ++ + P EY + ++KH + +GD V KGD ++DG+P
Sbjct: 2579 DGYVAFSEKDRRGKRSILIKPVDEQISPVEYLVSRSKHVIVNEGDFVRKGDLLMDGDPDL 2638
Query: 1213 QDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPADTEYILG 1272
DILR+ G+EALA Y+I+E+Q+VYRL+GV I++KH+EV+++ MLQKVEITDP DT Y++G
Sbjct: 2639 HDILRVLGLEALAHYMISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPGDTMYLVG 2698
Query: 1273 DNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKVLTEAAI 1332
+++D++EV+ N +++ GK+ + PILQGIT+ASL+T SFISAASFQETTKVLTEAA
Sbjct: 2699 ESIDKLEVDRENDAMSNSGKRPAHYLPILQGITRASLETSSFISAASFQETTKVLTEAAF 2758
Query: 1333 AGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRVAM 1368
GK D L G KENVIVGR IPAGTG I+++ R +++
Sbjct: 2759 CGKSDPLSGLKENVIVGRLIPAGTGLIMNKVRALSL 2794