RPSBLAST alignment for GI: 254780142 and conserved domain: CHL00018

>gnl|CDD|176961 CHL00018, rpoC1, RNA polymerase beta' subunit. Length = 663
 Score =  704 bits (1820), Expect = 0.0
 Identities = 264/648 (40%), Positives = 374/648 (57%), Gaps = 63/648 (9%)

Query: 14  DDRGFDSVRISIASPAKIASLSY---------GEIKKPETINYRTFKPERDGLFCARIFG 64
           D      +RI +ASP +I + +          GE+ KP TI+Y+T KPE+DGLFC RIFG
Sbjct: 3   DRYKHQQLRIGLASPQQIRAWAERILPNGEIVGEVTKPYTIHYKTNKPEKDGLFCERIFG 62

Query: 65  PIKDYECICGKYKRM---KYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSL 121
           PIK   C CG Y+ +   K     CE+CGVE T S VRR RM +I LA PV H W+LK L
Sbjct: 63  PIKSGICACGNYRVIGDEKEDPKFCEQCGVEFTDSRVRRYRMGYIKLACPVTHVWYLKRL 122

Query: 122 PSRISTLLGMSLRDVERVLYFE-SYVVVDPGLSSLEKYQILTEEE---YVEAVSQF---- 173
           PS I+ LL   L+++E ++Y + S+        +  + + L E E   +  ++  F    
Sbjct: 123 PSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFSTQ 182

Query: 174 GQDQF----IAMMGADAIYELLIALDLQNLALTLRDQ---LSKSSSIF----------RR 216
           G D F    I+  GA AI E L  LDL+ +      +   L +  S            R+
Sbjct: 183 GFDTFRNREIST-GAGAIREQLADLDLRIIIDNSLVEWKELGEEGSTGNEWEDRKIGRRK 241

Query: 217 KKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIG 276
             +++R+K+   FI +   P WM++  LPVLPP+LRP++ LD G+  +SDLN+LYRRVI 
Sbjct: 242 DFLVRRIKLAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQLDGGKLMSSDLNELYRRVIY 301

Query: 277 RNNRLMRLKSLH--APEIIIRNEKRMLQESVDALFDNGRHKRVVTGANRRPLKSLSDMLK 334
           RNN L  L +     P  ++  +K++LQE+VDAL DNG   + +   + +P KS SD+++
Sbjct: 302 RNNTLTDLLTTSRSTPGELVMCQKKLLQEAVDALLDNGIRGQPMRDGHNKPYKSFSDVIE 361

Query: 335 GKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKKGYVS 394
           GK+GRFR NLLGKRVDYSGRSVIV GP L LHQCGLP+ +A+ELF+PF+   L ++   S
Sbjct: 362 GKEGRFRENLLGKRVDYSGRSVIVVGPSLSLHQCGLPREIAIELFQPFVIRGLIRQHLAS 421

Query: 395 TVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPL 454
            ++ AK  + ++ P VW++L EV+  H VLLNRAP+LHRL +QAF+P ++ G+AI LHPL
Sbjct: 422 NIRAAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPL 481

Query: 455 VCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCY 514
           VC G+NADFDGDQMAV+  +S EAQ EAR+LM S  NLL PA G P++VPSQDM+LGL  
Sbjct: 482 VCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPSQDMLLGLYV 541

Query: 515 L-------------STVHEGDPGEGMLFADMGEVYHALENKIVTLHSKIRGRYKSVDKDG 561
           L             +  +  +  +   F++  +   A   K + L S +  R++   +  
Sbjct: 542 LTIGNRRGIYANRYNPCNRKNSTKEPYFSNSYDALGAYRQKRINLDSPLWLRWRLDQRII 601

Query: 562 NSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIY 609
            S          R +  E+         +I    +I K+    + +IY
Sbjct: 602 AS----------REVPIEVQYESLGTYHEIYEHYLIVKSRKKEILSIY 639