RPSBLAST alignment for GI: 254780142 and conserved domain: CHL00117

>gnl|CDD|177040 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed. Length = 1364
 Score =  334 bits (858), Expect = 1e-91
 Identities = 145/379 (38%), Positives = 212/379 (55%), Gaps = 18/379 (4%)

Query: 592 CNQEMIKKNISAMVDTIYR---HCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPE 648
            N+ + K    A+   I     H G   T    D L  LGF+ A ++GIS G DD++ P 
Sbjct: 10  HNKVIDKT---ALKRLISWLIDHFGMAYTSHILDQLKTLGFQQATAAGISLGIDDLLTPP 66

Query: 649 SKEKIIAEADKMVKEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDP 708
           SK  ++ +A++     E  Y+ G +   EK  + +++W  T++ + +EM    +    DP
Sbjct: 67  SKGWLVQDAEQQSLILEKHYHYGNVHAVEKLRQSIEIWYATSEYLKQEMNPNFR--MTDP 124

Query: 709 ETGRQKKMNSIFMMSHSGARGSIHQMRQLGGMRGLIAKPSGEIIESPIRSHFKGGLCGFE 768
                  +N ++MMS SGARG+  Q+ QL GMRGL++ P G+II+ PI+S+F+ GL   E
Sbjct: 125 -------LNPVYMMSFSGARGNASQVHQLVGMRGLMSDPQGQIIDLPIQSNFREGLSLTE 177

Query: 769 FFQSCVGGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQV 828
           +  SC G RKG++D  +RTA +GYL+RRLV+V Q+ VV + DC T +G++++   +   +
Sbjct: 178 YIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIVVRETDCGTTRGISVS-PRNGMMI 236

Query: 829 VYSLGSRVLGRTALDDIINPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESS 888
              L   ++GR   DDI   + + CI    Q I     N       + + IRS LTC S+
Sbjct: 237 ERILIQTLIGRVLADDIY--IGSRCIATRNQDIGIGLANRFITFRAQPISIRSPLTCRST 294

Query: 889 RGVCVLCYGRDLARGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIES 948
             +C LCYG  LA G LV +GEAVG+IA QSIGEPGTQLT+RTFH GG  T      + +
Sbjct: 295 SWICQLCYGWSLAHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEQVRA 354

Query: 949 PCDGIVKIKNRNVCRNSTN 967
           P +G +K     V    T 
Sbjct: 355 PFNGKIKFNEDLVHPTRTR 373