RPSBLAST alignment for GI: 254780142 and conserved domain: PRK02597

>gnl|CDD|179447 PRK02597, rpoC2, DNA-directed RNA polymerase subunit beta'; Provisional. Length = 1331

 Score =  377 bits (971), Expect = e-105
 Identities = 199/562 (35%), Positives = 300/562 (53%), Gaps = 62/562 (11%)

Query: 592  CNQEMIKKNISAMVDTIYRHCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKE 651
             N+ + KK +  ++   +++ G   T    D+L  LGFRYA  +G+S   DD+ VP +K 
Sbjct: 4    RNRVVDKKALKNLIAWAFKNYGTARTAQMADNLKDLGFRYATQAGVSISVDDLKVPPAKR 63

Query: 652  KIIAEADKMVKEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETG 711
             ++ +A++ +   E +Y  G IT  E++ KV+D W +T +++ +E++   +  + DP   
Sbjct: 64   DLLEQAEEEITATEERYRRGEITEVERFQKVIDTWNETNERLKDEVVKNFR--QNDP--- 118

Query: 712  RQKKMNSIFMMSHSGARGSIHQMRQLGGMRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQ 771
                +NS++MM+ SGARG++ Q+RQL GMRGL+A P GEII+ PI+++F+ GL   E+  
Sbjct: 119  ----LNSVYMMAFSGARGNMSQVRQLVGMRGLMANPQGEIIDLPIKTNFREGLTVTEYVI 174

Query: 772  SCVGGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYS 831
            S  G RKGL+D  +RTA SGYL+RRLVDV+Q+ +V + DC T +G+ +  + D  +V+  
Sbjct: 175  SSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVREEDCGTTRGIVVEAMDDGDRVLIP 234

Query: 832  LGSRVLGRTALDDIINPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGV 891
            LG R+LGR   +D+++P   E I +    I      +IEK G+  V +RS LTCE++R V
Sbjct: 235  LGDRLLGRVLAEDVVDP-EGEVIAERNTAIDPDLAKKIEKAGVEEVMVRSPLTCEAARSV 293

Query: 892  CVLCYGRDLARGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIESPCD 951
            C  CYG  LA   LV++GEAVG+IAAQSIGEPGTQLTMRTFH GG  T      + SP  
Sbjct: 294  CRKCYGWSLAHNHLVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVARQVRSPFA 353

Query: 952  GIV----KIKNRNVCRNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVI 1007
            G V    K++ R        + +    +  L +      +     I  G+ LFVDDG  +
Sbjct: 354  GTVEFGKKLRTRPYRTRHGVEALQAEVDFDLVLKPSGKGKPQKIEITQGSLLFVDDGQTV 413

Query: 1008 ECGQRISE---------WDPHTFPIITEVSGTVGFEDLVDGISVIESIGESTGIAKRKVI 1058
            E  Q ++E          +  T  +I +++G V F DL+      +  G +T  A+R  +
Sbjct: 414  EADQLLAEVAAGAVKKSTEKATKDVICDLAGEVRFADLIPE-EKTDRQGNTTRKAQRGGL 472

Query: 1059 DWRFASRSQNLKPAIVVTDENGVVLKSARGTDARWFLPVDALLSVSPGQKVSTGDVLA-- 1116
             W  +    NL P                           A   VS G +V  GDVLA  
Sbjct: 473  LWVLSGDVYNLPP--------------------------GAEPVVSNGDRVEEGDVLAET 506

Query: 1117 ----------RLPISSAKTKDI 1128
                      RL  SS  ++++
Sbjct: 507  KLVSEHGGVVRLRESSGDSREV 528