HHsearch alignment for GI: 254780143 and conserved domain: PRK07225

>PRK07225 DNA-directed RNA polymerase subunit B'; Validated.
Probab=100.00  E-value=0  Score=1234.53  Aligned_cols=505  Identities=32%  Similarity=0.507  Sum_probs=433.6

Q ss_pred             CCCCCCCEEEEEECCCC----------------------CCCEEECCHHHHCCEEEECCCCEECCCCCCCCCCEEECCCC
Q ss_conf             68764410698622553----------------------48166429677376379616534114684022200000023
Q gi|254780143|r  594 AYGFIETPYRKVCDGKV----------------------TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG  651 (1386)
Q Consensus       594 ~~g~ie~py~~v~~~~~----------------------~~~i~~l~~~~e~~~~Ia~~~~~l~~~~~~~~~~~~~r~~~  651 (1386)
T Consensus        56 D~GR~~RPl~iv~n~k~~~~~~~~~~l~~~~~~~~dl~~~g~IEyiD~~Ee~~~~Ia~~~~~l~----------------  119 (605)
T PRK07225         56 DAGRARRPLIVVENGVPKLTEEHIEKLKNGELTFDDLVKQGVIEYLDAEEEENAYIALYEEDLT----------------  119 (605)
T ss_pred             CCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHCCCEEEECHHHHCCEEEECCHHHCC----------------
T ss_conf             8982256699998994747799999987389898999755988997644500818971789958----------------


Q ss_pred             CCCCCCHHHEEECCCCCCCEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHCCCEEECCC
Q ss_conf             33322578722023672110231123332011010022112223444321013665411126620111010653010212
Q gi|254780143|r  652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKR  731 (1386)
Q Consensus       652 ~~~~~~~~~v~~~~i~p~~i~sv~aslIPflehdda~R~l~g~nm~rQav~l~~~~~~~v~tg~E~~~~~~s~~~i~a~~  731 (1386)
T Consensus       120 -------~~~TH~EI~P~~ilgv~AslIPF~~hNqsPRn~yqc~M~KQA~G~~~~N~~----------------------  170 (605)
T PRK07225        120 -------PEHTHLEIDPSLILGIGAGMIPYPEHNASPRNTMGAGMIKQALGLPAANYK----------------------  170 (605)
T ss_pred             -------CCCEEEEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC----------------------
T ss_conf             -------774588636888655643156674678760667766533300276434565----------------------


Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCCCCCCCCC
Q ss_conf             44343356553025215665564446630111465554454732244530447977207852035522357860222375
Q gi|254780143|r  732 AGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNM  811 (1386)
Q Consensus       732 ~g~v~~vd~~~i~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~q~p~V~~g~~~~~~~~l~~~~~~~~~el~~G~N~  811 (1386)
T Consensus       171 -------------------~R~Dt~~~--------------~L~YPQkPLV~T~~~----------~~~~~d~~P~G~Na  207 (605)
T PRK07225        171 -------------------LRPDTRGH--------------LLHYPQVPLVRTQTQ----------EIIGFDDRPAGQNF  207 (605)
T ss_pred             -------------------EEECCCEE--------------EEECCCCCEEEEEEC----------HHCCCCCCCCCEEE
T ss_conf             -------------------66224015--------------996177766887400----------10254447897127


Q ss_pred             EEEEEECCCCCCCCCEECCHHHHHCCCCCEEEEEEEEHHHHHCCCCCCCCCCCCCCC------CHHHHHHCCCCCCCCCC
Q ss_conf             155531355444442000013442587310346665311211478840024666546------86784102413741377
Q gi|254780143|r  812 LVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNV------SEEGLKNIDECGIICVG  885 (1386)
Q Consensus       812 ~VA~m~~~GYN~EDaiiin~~~v~rg~~~s~h~~~y~~~~~~~~~g~~~~~~~~~~~------~~~~~~~ld~~Giv~~G  885 (1386)
T Consensus       208 iVAVmsYtGYNqEDAIIiNKsSidRGlfrs~~ykty~~eek~~~~g~~e~~-~~P~~~~~~~~~~~~y~~LD~dGii~~g  286 (605)
T PRK07225        208 VVAVMSYEGYNIEDALIMNKASIERGLGRSHFFRTYEGEERRYPGGQEDKF-EIPEKEVRGYRGEEAYRHLDDDGLVNPE  286 (605)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCEEEE-ECCCCCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf             999978778688888887666675187179999999999750689850486-1798311367766678537878873899


Q ss_pred             CEECCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             33136761110124677776770346654303555544323320227885322001210145654202667888899999
Q gi|254780143|r  886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE  965 (1386)
Q Consensus       886 ~~V~~gDilvgk~tp~~~~~~~pe~~~l~~i~~~~~~~~~d~~~~~~~g~~g~v~~~~~~~r~~~~~~~~~~~~~~~~~~  965 (1386)
T Consensus       287 ~~v~~gDVliGK~~P~~~~~~~-------~~~~~~~~~~~d~S~~~k~~e~g~VD~V~~~~-------------------  340 (605)
T PRK07225        287 TEVKSGDVLIGKTSPPRFLEEP-------EDFGISVEQRRETSVTMRSGEEGIVDTVILTE-------------------  340 (605)
T ss_pred             CEECCCCEEEEECCCCCCCCCC-------CCCCCCCCEEEEEEEECCCCCCCEEEEEEEEE-------------------
T ss_conf             8978998899951587544454-------33255453576621871589853465999984-------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             99872888999887888988888625853456655555432113576401485431001415867899999999989999
Q gi|254780143|r  966 LLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETS 1045 (1386)
Q Consensus       966 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1386)
                                                                                                      
T Consensus       341 --------------------------------------------------------------------------------  340 (605)
T PRK07225        341 --------------------------------------------------------------------------------  340 (605)
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCC
Q ss_conf             99999998988763125886774727699999987558855231433667873588863000078793587156986689
Q gi|254780143|r 1046 KSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPL 1125 (1386)
Q Consensus      1046 ~~~~~~~~~~k~~ki~~~~~~~~gv~~~vKV~ir~~R~p~iGDKfasRHGqKGVis~i~p~eDMPf~~dG~~pDIIlNPh 1125 (1386)
T Consensus       341 ---------------------~~~g~~~vKVriR~~R~P~iGDKFsSRHGQKGvig~i~~~eDMPFt~dGi~PDiIiNPH  399 (605)
T PRK07225        341 ---------------------TEEGSRLAKVRVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPFTESGVVPDLIINPH  399 (605)
T ss_pred             ---------------------CCCCCEEEEEEECHHCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCC
T ss_conf             ---------------------47787899999802117543002200246763121102540399388999871888988


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf             86750708999999999999871962243334322221024677787763154322100001352567776653026840
Q gi|254780143|r 1126 GVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 (1386)
Q Consensus      1126 gvPSRMtIGqllE~~lGka~~~~G~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 1205 (1386)
T Consensus       400 ~~PSRMTIGqllE~l~gK~~~~~G~~~d----------------------------------------------------  427 (605)
T PRK07225        400 AIPSRMTIGHVLEMIGGKVGSLEGRRVD----------------------------------------------------  427 (605)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCEEE----------------------------------------------------
T ss_conf             6876560899999987788874496353----------------------------------------------------


Q ss_pred             ECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEEECCCHHHHHCCCCCCCCCCCEEECCCCC
Q ss_conf             02565578899999999998686899869998689884026850488464541011021100002368731103079986
Q gi|254780143|r 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 (1386)
Q Consensus      1206 ~aTP~F~g~~~~~i~~~L~~aG~~~~Gke~lydG~TGe~~~~~IfvG~~YyqkL~HMV~DKiHARstGP~sllTrQP~eG 1285 (1386)
T Consensus       428 -~tp-F~~~~~~~~~~~L~~~g~~~~G~e~ly~G~tG~~~~~~If~G~~yYqRLkHmV~DK~~~R~~Gp~~~lTrQP~~G  505 (605)
T PRK07225        428 -GTA-FSGEPEEDLRESLKKLGFEHTGKEVMYDGITGEKIEADIFVGVIYYQKLHHMVASKMHARSRGPVQVLTRQPTEG  505 (605)
T ss_pred             -ECC-CCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCEECCEEEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf             -078-899888999999998389989988866587897702248998578663442220042675007874530388986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-------HHHHHH-------HHHHHHCCC--CCCCCCCCHHHHH
Q ss_conf             233178432078999999986989999861110011-------015999-------988763878--7899786677899
Q gi|254780143|r 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD-------VVGRTR-------VYESIVAGN--DTFETGTPESFNV 1349 (1386)
Q Consensus      1286 Rsr~GGlRfGEMErwaL~AyGAa~~LqE~Lt~kSDd-------v~gr~~-------~~~~iv~g~--~~~~~~~pesf~v 1349 (1386)
T Consensus       506 R~r~GGlR~GEMErd~liahGas~~l~erl~~~SD~~~~~vC~~CG~i~~~~~~~~~~~C~~C~~~~~i~~v~iPYa~Kl  585 (605)
T PRK07225        506 RAREGGLRFGEMERDVLIGHGAAMLLKERLLDESDKVEIYVCAKCGMIAIYDKKRNMKYCPICGEETDIYPVEMSYAFKL  585 (605)
T ss_pred             CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEECCCCCEECCCCCCCCCEEEEECCHHHHH
T ss_conf             45689801420578999987699999998742588846873105797024303579748989899883568537899999


Q ss_pred             HHHHHHHCCCCEEEEECCC
Q ss_conf             9999985420027640665
Q gi|254780143|r 1350 LVKEMQALGLSIDLENSRT 1368 (1386)
Q Consensus      1350 l~~El~~l~l~~~~~~~~~ 1368 (1386)
T Consensus       586 l~qEL~sm~I~~rl~~~d~  604 (605)
T PRK07225        586 LLDELKSLGIAPRLELEDK  604 (605)
T ss_pred             HHHHHHHCCCEEEEEECCC
T ss_conf             9999987898048984268