HHsearch alignment for GI: 254780143 and conserved domain: PRK07225
>PRK07225 DNA-directed RNA polymerase subunit B'; Validated.
Probab=100.00 E-value=0 Score=1234.53 Aligned_cols=505 Identities=32% Similarity=0.507 Sum_probs=433.6
Q ss_pred CCCCCCCEEEEEECCCC----------------------CCCEEECCHHHHCCEEEECCCCEECCCCCCCCCCEEECCCC
Q ss_conf 68764410698622553----------------------48166429677376379616534114684022200000023
Q gi|254780143|r 594 AYGFIETPYRKVCDGKV----------------------TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 (1386)
Q Consensus 594 ~~g~ie~py~~v~~~~~----------------------~~~i~~l~~~~e~~~~Ia~~~~~l~~~~~~~~~~~~~r~~~ 651 (1386)
T Consensus 56 D~GR~~RPl~iv~n~k~~~~~~~~~~l~~~~~~~~dl~~~g~IEyiD~~Ee~~~~Ia~~~~~l~---------------- 119 (605)
T PRK07225 56 DAGRARRPLIVVENGVPKLTEEHIEKLKNGELTFDDLVKQGVIEYLDAEEEENAYIALYEEDLT---------------- 119 (605)
T ss_pred CCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHCCCEEEECHHHHCCEEEECCHHHCC----------------
T ss_conf 8982256699998994747799999987389898999755988997644500818971789958----------------
Q ss_pred CCCCCCHHHEEECCCCCCCEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHCCCEEECCC
Q ss_conf 33322578722023672110231123332011010022112223444321013665411126620111010653010212
Q gi|254780143|r 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKR 731 (1386)
Q Consensus 652 ~~~~~~~~~v~~~~i~p~~i~sv~aslIPflehdda~R~l~g~nm~rQav~l~~~~~~~v~tg~E~~~~~~s~~~i~a~~ 731 (1386)
T Consensus 120 -------~~~TH~EI~P~~ilgv~AslIPF~~hNqsPRn~yqc~M~KQA~G~~~~N~~---------------------- 170 (605)
T PRK07225 120 -------PEHTHLEIDPSLILGIGAGMIPYPEHNASPRNTMGAGMIKQALGLPAANYK---------------------- 170 (605)
T ss_pred -------CCCEEEEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC----------------------
T ss_conf -------774588636888655643156674678760667766533300276434565----------------------
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCCCCCCCCC
Q ss_conf 44343356553025215665564446630111465554454732244530447977207852035522357860222375
Q gi|254780143|r 732 AGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNM 811 (1386)
Q Consensus 732 ~g~v~~vd~~~i~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~q~p~V~~g~~~~~~~~l~~~~~~~~~el~~G~N~ 811 (1386)
T Consensus 171 -------------------~R~Dt~~~--------------~L~YPQkPLV~T~~~----------~~~~~d~~P~G~Na 207 (605)
T PRK07225 171 -------------------LRPDTRGH--------------LLHYPQVPLVRTQTQ----------EIIGFDDRPAGQNF 207 (605)
T ss_pred -------------------EEECCCEE--------------EEECCCCCEEEEEEC----------HHCCCCCCCCCEEE
T ss_conf -------------------66224015--------------996177766887400----------10254447897127
Q ss_pred EEEEEECCCCCCCCCEECCHHHHHCCCCCEEEEEEEEHHHHHCCCCCCCCCCCCCCC------CHHHHHHCCCCCCCCCC
Q ss_conf 155531355444442000013442587310346665311211478840024666546------86784102413741377
Q gi|254780143|r 812 LVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNV------SEEGLKNIDECGIICVG 885 (1386)
Q Consensus 812 ~VA~m~~~GYN~EDaiiin~~~v~rg~~~s~h~~~y~~~~~~~~~g~~~~~~~~~~~------~~~~~~~ld~~Giv~~G 885 (1386)
T Consensus 208 iVAVmsYtGYNqEDAIIiNKsSidRGlfrs~~ykty~~eek~~~~g~~e~~-~~P~~~~~~~~~~~~y~~LD~dGii~~g 286 (605)
T PRK07225 208 VVAVMSYEGYNIEDALIMNKASIERGLGRSHFFRTYEGEERRYPGGQEDKF-EIPEKEVRGYRGEEAYRHLDDDGLVNPE 286 (605)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCEEEE-ECCCCCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf 999978778688888887666675187179999999999750689850486-1798311367766678537878873899
Q ss_pred CEECCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 33136761110124677776770346654303555544323320227885322001210145654202667888899999
Q gi|254780143|r 886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 (1386)
Q Consensus 886 ~~V~~gDilvgk~tp~~~~~~~pe~~~l~~i~~~~~~~~~d~~~~~~~g~~g~v~~~~~~~r~~~~~~~~~~~~~~~~~~ 965 (1386)
T Consensus 287 ~~v~~gDVliGK~~P~~~~~~~-------~~~~~~~~~~~d~S~~~k~~e~g~VD~V~~~~------------------- 340 (605)
T PRK07225 287 TEVKSGDVLIGKTSPPRFLEEP-------EDFGISVEQRRETSVTMRSGEEGIVDTVILTE------------------- 340 (605)
T ss_pred CEECCCCEEEEECCCCCCCCCC-------CCCCCCCCEEEEEEEECCCCCCCEEEEEEEEE-------------------
T ss_conf 8978998899951587544454-------33255453576621871589853465999984-------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 99872888999887888988888625853456655555432113576401485431001415867899999999989999
Q gi|254780143|r 966 LLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETS 1045 (1386)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1386)
T Consensus 341 -------------------------------------------------------------------------------- 340 (605)
T PRK07225 341 -------------------------------------------------------------------------------- 340 (605)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCC
Q ss_conf 99999998988763125886774727699999987558855231433667873588863000078793587156986689
Q gi|254780143|r 1046 KSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPL 1125 (1386)
Q Consensus 1046 ~~~~~~~~~~k~~ki~~~~~~~~gv~~~vKV~ir~~R~p~iGDKfasRHGqKGVis~i~p~eDMPf~~dG~~pDIIlNPh 1125 (1386)
T Consensus 341 ---------------------~~~g~~~vKVriR~~R~P~iGDKFsSRHGQKGvig~i~~~eDMPFt~dGi~PDiIiNPH 399 (605)
T PRK07225 341 ---------------------TEEGSRLAKVRVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPFTESGVVPDLIINPH 399 (605)
T ss_pred ---------------------CCCCCEEEEEEECHHCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCC
T ss_conf ---------------------47787899999802117543002200246763121102540399388999871888988
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 86750708999999999999871962243334322221024677787763154322100001352567776653026840
Q gi|254780143|r 1126 GVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 (1386)
Q Consensus 1126 gvPSRMtIGqllE~~lGka~~~~G~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 1205 (1386)
T Consensus 400 ~~PSRMTIGqllE~l~gK~~~~~G~~~d---------------------------------------------------- 427 (605)
T PRK07225 400 AIPSRMTIGHVLEMIGGKVGSLEGRRVD---------------------------------------------------- 427 (605)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEE----------------------------------------------------
T ss_conf 6876560899999987788874496353----------------------------------------------------
Q ss_pred ECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEEECCCHHHHHCCCCCCCCCCCEEECCCCC
Q ss_conf 02565578899999999998686899869998689884026850488464541011021100002368731103079986
Q gi|254780143|r 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 (1386)
Q Consensus 1206 ~aTP~F~g~~~~~i~~~L~~aG~~~~Gke~lydG~TGe~~~~~IfvG~~YyqkL~HMV~DKiHARstGP~sllTrQP~eG 1285 (1386)
T Consensus 428 -~tp-F~~~~~~~~~~~L~~~g~~~~G~e~ly~G~tG~~~~~~If~G~~yYqRLkHmV~DK~~~R~~Gp~~~lTrQP~~G 505 (605)
T PRK07225 428 -GTA-FSGEPEEDLRESLKKLGFEHTGKEVMYDGITGEKIEADIFVGVIYYQKLHHMVASKMHARSRGPVQVLTRQPTEG 505 (605)
T ss_pred -ECC-CCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCEECCEEEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf -078-899888999999998389989988866587897702248998578663442220042675007874530388986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-------HHHHHH-------HHHHHHCCC--CCCCCCCCHHHHH
Q ss_conf 233178432078999999986989999861110011-------015999-------988763878--7899786677899
Q gi|254780143|r 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD-------VVGRTR-------VYESIVAGN--DTFETGTPESFNV 1349 (1386)
Q Consensus 1286 Rsr~GGlRfGEMErwaL~AyGAa~~LqE~Lt~kSDd-------v~gr~~-------~~~~iv~g~--~~~~~~~pesf~v 1349 (1386)
T Consensus 506 R~r~GGlR~GEMErd~liahGas~~l~erl~~~SD~~~~~vC~~CG~i~~~~~~~~~~~C~~C~~~~~i~~v~iPYa~Kl 585 (605)
T PRK07225 506 RAREGGLRFGEMERDVLIGHGAAMLLKERLLDESDKVEIYVCAKCGMIAIYDKKRNMKYCPICGEETDIYPVEMSYAFKL 585 (605)
T ss_pred CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEECCCCCEECCCCCCCCCEEEEECCHHHHH
T ss_conf 45689801420578999987699999998742588846873105797024303579748989899883568537899999
Q ss_pred HHHHHHHCCCCEEEEECCC
Q ss_conf 9999985420027640665
Q gi|254780143|r 1350 LVKEMQALGLSIDLENSRT 1368 (1386)
Q Consensus 1350 l~~El~~l~l~~~~~~~~~ 1368 (1386)
T Consensus 586 l~qEL~sm~I~~rl~~~d~ 604 (605)
T PRK07225 586 LLDELKSLGIAPRLELEDK 604 (605)
T ss_pred HHHHHHHCCCEEEEEECCC
T ss_conf 9999987898048984268